Propagation of PerR regulog to Lactobacillus rhamnosus HN001
| Source regulog: | PerR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Manganese homeostasis; Oxidative stress response; Iron homeostasis |
| Effector: | Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus rhamnosus HN001 |
| Orthologous TF(s) | LRH_04789, LRH_03397 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -80
Score: 5 Sequence: TTATATTCGTTCTAA
Position: -46
Score: 5.2 Sequence: TTGTAATGGTTATAA
Locus tag: LRH_11884
|
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| LRH_11884 | -80 | 5 | TTATATTCGTTCTAA | |
| -46 | 5.2 | TTGTAATGGTTATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadA | ||||
| Ortholog function: Predicted cation-transporting ATP-ase | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0392 | -52 | 4.6 | CAATAATTGTTATAA |
| Lactobacillus casei ATCC 334 | LSEI_2799 | -80 | 5 | TTATATTCGTTCTAA |
| -46 | 5.2 | TTGTAATGGTTATAA | ||
| Lactobacillus plantarum WCFS1 | lp_3327 | -93 | 5.4 | TTAGAATCATTCTTA |
| Lactobacillus rhamnosus GG | LGG_02803 | -80 | 5 | TTATATTCGTTCTAA |
| -46 | 5.2 | TTGTAATGGTTATAA | ||
| Lactobacillus sakei subsp. sakei 23K | LSA0969 | -65 | 5.3 | TGATAATAATTCTAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0169 | -93 | 5.5 | TTATAATTTTTCTAA |
|
Position: -35
Score: 5 Sequence: TTAGAATGGTTACAA
Locus tag: LRH_11422
|
||||
| LRH_11422 | -35 | 5 | TTAGAATGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybbL | ||||
| Ortholog function: Predicted ABC transporter, ATP-binding protein | ||||
| Lactobacillus plantarum WCFS1 | lp_3225 | -36 | 6 | TTATAATGATTCTAA |
| Lactobacillus rhamnosus GG | LGG_02565 | -35 | 5 | TTAGAATGGTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1684 | -38 | 5.5 | TTATAATTTTTCTAA |
|
Position: -75
Score: 5.5 Sequence: TTGTAATTATTCTAA
Locus tag: LRH_10917
|
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| LRH_10917 | -75 | 5.5 | TTGTAATTATTCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: npr | ||||
| Ortholog function: NADH peroxidase (EC 1.11.1.1) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_B09 | -90 | 5.9 | TTAGAATGATTCTAA |
| Lactobacillus casei ATCC 334 | LSEI_0397 | -74 | 4.7 | TTGGAACTATTCTAA |
| Lactobacillus plantarum WCFS1 | lp_2544 | -95 | 5.1 | TTAGAATAATTACAA |
| Lactobacillus rhamnosus GG | LGG_00491 | -75 | 5.5 | TTGTAATTATTCTAA |
| Lactobacillus sakei subsp. sakei 23K | LSA0575 | -61 | 5 | TTGTAATAATTATTA |
|
Position: -31
Score: 5.5 Sequence: TAATAATCATTCTAA
Locus tag: LRH_03120
|
||||
| LRH_03120 | -31 | 5.5 | TAATAATCATTCTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ahpC | ||||
| Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0086 | -82 | 4.9 | TTAGAATCATTCTTG |
| Lactobacillus casei ATCC 334 | LSEI_2506 | -31 | 5.5 | TAATAATCATTCTAA |
| Lactobacillus fermentum IFO 3956 | LAF_0409 | -32 | 5 | TGATAATCGTTCTAA |
| Lactobacillus reuteri JCM 1112 | LAR_1019 | -94 | 5.6 | TTAGAATTGTTCTAA |
| -33 | 5.7 | TAAGAATGATTCTAA | ||
|
Position: -72
Score: 4.8 Sequence: TTAGATTAATTCCAA
Locus tag: LRH_07908
|
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| LRH_07908 | -72 | 4.8 | TTAGATTAATTCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cueO | ||||
| Ortholog function: Predicted copper oxidase | ||||
| Lactobacillus casei ATCC 334 | LSEI_2417 | -192 | 5.3 | TTAGATTAATTCTAA |
| Lactobacillus plantarum WCFS1 | lp_0355 | -88 | 5.6 | TTAAAATAATTCTAA |
| Lactobacillus rhamnosus GG | LGG_02415 | -72 | 4.8 | TTAGATTAATTCCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0502 | -73 | 5.3 | TTAGATTAATTCTAA |