Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of PerR regulog to Lactobacillus rhamnosus HN001

Reference regulog properties
Source regulog: PerR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor
Biological process: Manganese homeostasis; Oxidative stress response; Iron homeostasis
Effector: Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus rhamnosus HN001
Orthologous TF(s) LRH_04789, LRH_03397
Regulated genes 5
Built upon 49 sites [see more]
Predicted regulatory interactions in Lactobacillus rhamnosus HN001
Locus tag Position Score Sequence
Position: -80
Score: 5
Sequence: TTATATTCGTTCTAA
Position: -46
Score: 5.2
Sequence: TTGTAATGGTTATAA
Locus tag: LRH_11884
LRH_11884 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cadA
Ortholog function: Predicted cation-transporting ATP-ase
Lactobacillus brevis ATCC 367 LVIS_0392 -52 4.6 CAATAATTGTTATAA
Lactobacillus casei ATCC 334 LSEI_2799 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus plantarum WCFS1 lp_3327 -93 5.4 TTAGAATCATTCTTA
Lactobacillus rhamnosus GG LGG_02803 -80 5 TTATATTCGTTCTAA
-46 5.2 TTGTAATGGTTATAA
Lactobacillus sakei subsp. sakei 23K LSA0969 -65 5.3 TGATAATAATTCTAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0169 -93 5.5 TTATAATTTTTCTAA
Position: -35
Score: 5
Sequence: TTAGAATGGTTACAA
Locus tag: LRH_11422
LRH_11422 -35 5 TTAGAATGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybbL
Ortholog function: Predicted ABC transporter, ATP-binding protein
Lactobacillus plantarum WCFS1 lp_3225 -36 6 TTATAATGATTCTAA
Lactobacillus rhamnosus GG LGG_02565 -35 5 TTAGAATGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1684 -38 5.5 TTATAATTTTTCTAA
Position: -75
Score: 5.5
Sequence: TTGTAATTATTCTAA
Locus tag: LRH_10917
LRH_10917 -75 5.5 TTGTAATTATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: npr
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus brevis ATCC 367 LVIS_B09 -90 5.9 TTAGAATGATTCTAA
Lactobacillus casei ATCC 334 LSEI_0397 -74 4.7 TTGGAACTATTCTAA
Lactobacillus plantarum WCFS1 lp_2544 -95 5.1 TTAGAATAATTACAA
Lactobacillus rhamnosus GG LGG_00491 -75 5.5 TTGTAATTATTCTAA
Lactobacillus sakei subsp. sakei 23K LSA0575 -61 5 TTGTAATAATTATTA
Position: -31
Score: 5.5
Sequence: TAATAATCATTCTAA
Locus tag: LRH_03120
LRH_03120 -31 5.5 TAATAATCATTCTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ahpC
Ortholog function: Alkyl hydroperoxide reductase protein C (EC 1.6.4.-)
Lactobacillus brevis ATCC 367 LVIS_0086 -82 4.9 TTAGAATCATTCTTG
Lactobacillus casei ATCC 334 LSEI_2506 -31 5.5 TAATAATCATTCTAA
Lactobacillus fermentum IFO 3956 LAF_0409 -32 5 TGATAATCGTTCTAA
Lactobacillus reuteri JCM 1112 LAR_1019 -94 5.6 TTAGAATTGTTCTAA
-33 5.7 TAAGAATGATTCTAA
Position: -72
Score: 4.8
Sequence: TTAGATTAATTCCAA
Locus tag: LRH_07908
LRH_07908 -72 4.8 TTAGATTAATTCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cueO
Ortholog function: Predicted copper oxidase
Lactobacillus casei ATCC 334 LSEI_2417 -192 5.3 TTAGATTAATTCTAA
Lactobacillus plantarum WCFS1 lp_0355 -88 5.6 TTAAAATAATTCTAA
Lactobacillus rhamnosus GG LGG_02415 -72 4.8 TTAGATTAATTCCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0502 -73 5.3 TTAGATTAATTCTAA
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