Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RbsR regulog to Lactobacillus fermentum IFO 3956

Reference regulog properties
Source regulog: RbsR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Ribose utilization
Effector: Ribose
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus fermentum IFO 3956
Orthologous TF(s) LAF_1343
Regulated genes 3
Built upon 18 sites [see more]
Predicted regulatory interactions in Lactobacillus fermentum IFO 3956
Locus tag Position Score Sequence
Position: -44
Score: 6
Sequence: TTAGTAAACTGTTTTATTAA
Locus tag: LAF_1343
LAF_1343 -44 6 TTAGTAAACTGTTTTATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Transcriptional repressor of ribose utilization, LacI family
Lactobacillus casei ATCC 334 LSEI_0306 -45 6.7 TAAGTAAAACGTTTTACCTA
Lactobacillus fermentum IFO 3956 LAF_1343 -44 6 TTAGTAAACTGTTTTATTAA
Lactobacillus reuteri JCM 1112 LAR_1219 -35 4.7 TAGATAAAACTGTTTACTAA
Lactobacillus rhamnosus GG LGG_00372 -46 6.7 TAAGTAAAACGTTTTACCTA
Lactobacillus sakei subsp. sakei 23K LSA0203 -49 6.9 TTAGTAAAACGTTTTACTAA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0795 -123 6.6 TTAGTAAAACGTTTAACCAA
Oenococcus oeni PSU-1 OEOE_0146 -47 5.1 TGTTGTAAACGTTTTAAGAA
Position: -47
Score: 5
Sequence: AACGTAAAACGATTTACTGA
Locus tag: LAF_1689
LAF_1689 -47 5 AACGTAAAACGATTTACTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus fermentum IFO 3956 LAF_1738 -59 6.2 TACGTAAAAGGTTTTAACAA
Lactobacillus fermentum IFO 3956 LAF_1689 -47 5 AACGTAAAACGATTTACTGA
Position: -59
Score: 6.2
Sequence: TACGTAAAAGGTTTTAACAA
Locus tag: LAF_1738
LAF_1738 -59 6.2 TACGTAAAAGGTTTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus fermentum IFO 3956 LAF_1738 -59 6.2 TACGTAAAAGGTTTTAACAA
Lactobacillus fermentum IFO 3956 LAF_1689 -47 5 AACGTAAAACGATTTACTGA
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