Propagation of RbsR regulog to Lactobacillus fermentum IFO 3956
| Source regulog: | RbsR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Ribose utilization |
| Effector: | Ribose |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus fermentum IFO 3956 |
| Orthologous TF(s) | LAF_1343 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -44
Score: 6 Sequence: TTAGTAAACTGTTTTATTAA
Locus tag: LAF_1343
|
||||
| LAF_1343 | -44 | 6 | TTAGTAAACTGTTTTATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsR | ||||
| Ortholog function: Transcriptional repressor of ribose utilization, LacI family | ||||
| Lactobacillus casei ATCC 334 | LSEI_0306 | -45 | 6.7 | TAAGTAAAACGTTTTACCTA |
| Lactobacillus fermentum IFO 3956 | LAF_1343 | -44 | 6 | TTAGTAAACTGTTTTATTAA |
| Lactobacillus reuteri JCM 1112 | LAR_1219 | -35 | 4.7 | TAGATAAAACTGTTTACTAA |
| Lactobacillus rhamnosus GG | LGG_00372 | -46 | 6.7 | TAAGTAAAACGTTTTACCTA |
| Lactobacillus sakei subsp. sakei 23K | LSA0203 | -49 | 6.9 | TTAGTAAAACGTTTTACTAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0795 | -123 | 6.6 | TTAGTAAAACGTTTAACCAA |
| Oenococcus oeni PSU-1 | OEOE_0146 | -47 | 5.1 | TGTTGTAAACGTTTTAAGAA |
|
Position: -47
Score: 5 Sequence: AACGTAAAACGATTTACTGA
Locus tag: LAF_1689
|
||||
| LAF_1689 | -47 | 5 | AACGTAAAACGATTTACTGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_1738 | -59 | 6.2 | TACGTAAAAGGTTTTAACAA |
| Lactobacillus fermentum IFO 3956 | LAF_1689 | -47 | 5 | AACGTAAAACGATTTACTGA |
|
Position: -59
Score: 6.2 Sequence: TACGTAAAAGGTTTTAACAA
Locus tag: LAF_1738
|
||||
| LAF_1738 | -59 | 6.2 | TACGTAAAAGGTTTTAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus fermentum IFO 3956 | LAF_1738 | -59 | 6.2 | TACGTAAAAGGTTTTAACAA |
| Lactobacillus fermentum IFO 3956 | LAF_1689 | -47 | 5 | AACGTAAAACGATTTACTGA |