Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Lactobacillus crispatus ST1

Reference regulog properties
Source regulog: Rex - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus crispatus ST1
Orthologous TF(s) LCRIS_00397
Regulated genes 2
Built upon 68 sites [see more]
Predicted regulatory interactions in Lactobacillus crispatus ST1
Locus tag Position Score Sequence
Position: -40
Score: 5.4
Sequence: TTGTTAAAAATATCACTA
Locus tag: LCRIS_00274
LCRIS_00274 -40 5.4 TTGTTAAAAATATCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27)
Lactobacillus acidophilus NCFM LBA0271 -40 5.4 TTGTTAAAATTATCACTA
Lactobacillus helveticus DPC 4571 lhv_0289 -39 5.4 TTGTTAAAATTATCACTA
Lactobacillus johnsonii NCC 533 LJ0274 -40 5.4 TTGTTAAATAAATCACTA
Lactobacillus sakei subsp. sakei 23K LSA1606 -97 4.9 TTCTGAAAATTTAAACAA
Position: -48
Score: 5.5
Sequence: TTGTAAATTAGTTCACAA
Locus tag: LCRIS_00464
LCRIS_00464 -48 5.5 TTGTAAATTAGTTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -45 5.5 TTGTAAATTAGTTCACAA
Lactobacillus brevis ATCC 367 LVIS_0119 -105 5 TTGTGATTTTTTTAACAT
-47 4.8 TCGTGAAGAAGTTAACAA
Lactobacillus casei ATCC 334 LSEI_0775 -106 5 TCGTGAAAAAATTCACCA
-85 4.7 TTGTTTACAAAATCACAA
-49 5.4 TTGTGAAATGGTTAACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1581 -47 5.2 TTGAGAAATTGATCACAA
Lactobacillus fermentum IFO 3956 LAF_0277 -151 4.9 TTGAAATTTAATTCACAA
-85 4.5 TTGTTGACTAAATCACAA
Lactobacillus johnsonii NCC 533 LJ1766 -289 4.8 TTATTAAAATTTTAACAT
-191 5.3 TTGTGAAATATTTTTCAA
-104 5 TTGTAAAAAGATGCACAA
Lactobacillus plantarum WCFS1 lp_3662 -43 5.5 TTGTAAATTAATTCACAA
Lactobacillus reuteri JCM 1112 LAR_0310 -238 4.4 TTGTGAAATAGACTTCAA
-104 5.1 TTGTTTAAATGTTCACAA
Lactobacillus rhamnosus GG LGG_00757 -105 5.2 TCGTGAAAAAGTTCACTA
-84 4.7 TTGTTTACAAAATCACAA
-48 5.4 TTGTGAAATGGTTAACAA
Lactobacillus sakei subsp. sakei 23K LSA0379 -99 5.1 CTGTTAAAAAAATCACAA
-42 5.2 TTGTTAATTAAATCACAT
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