Propagation of CcpA regulog to Lactobacillus rhamnosus GG
| Source regulog: | CcpA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus rhamnosus GG |
| Orthologous TF(s) | LGG_00793 |
| Regulated genes | 38 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -89
Score: 4.5 Sequence: TTGACAGCGCTTCCAT
Locus tag: LGG_00372
|
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| LGG_00372 | -89 | 4.5 | TTGACAGCGCTTCCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsR | ||||
| Ortholog function: Ribose operon transcriptional regulator, LacI family | ||||
| Lactobacillus casei ATCC 334 | LSEI_0306 | -88 | 4.5 | TTGACAGCGCTTCCAA |
| Lactobacillus rhamnosus GG | LGG_00372 | -89 | 4.5 | TTGACAGCGCTTCCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0203 | -114 | 4.3 | TGTAAACCGTTTTCAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0795 | -76 | 5.1 | ATGGAAGCGTTTTCAA |
| Oenococcus oeni PSU-1 | OEOE_0146 | -45 | 4.6 | TTGTAAACGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1700 | -140 | 4.2 | ATATAAGCGTTTAATT |
|
Position: -27
Score: 4.3 Sequence: GTGAAAACGGTTACTG
Locus tag: LGG_00601
|
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| LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0759 | 4 | 4.4 | AAGTATCCGCTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_0262 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -145 | 4.2 | GTAAAAGCGCTTTCTG |
| -82 | 4.4 | TTTGAACCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -130 | 4.2 | ATGAAATTGTTTACAA |
| Oenococcus oeni PSU-1 | OEOE_1339 | -122 | 4.1 | TTGAAAACGAAAACTT |
| -66 | 4.5 | TGAAAAACGTTTTCAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
|
Position: -94
Score: 4.5 Sequence: ATGAAATCGGATACAT
Locus tag: LGG_00606
|
||||
| LGG_00606 | -94 | 4.5 | ATGAAATCGGATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0634 | -140 | 4.5 | ATGAAATCGGATACAT |
| Lactobacillus rhamnosus GG | LGG_00606 | -94 | 4.5 | ATGAAATCGGATACAT |
|
Position: -51
Score: 5.1 Sequence: TAGAAAACGTTTTCAT
Locus tag: LGG_00644
|
||||
| LGG_00644 | -51 | 5.1 | TAGAAAACGTTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpK | ||||
| Ortholog function: Glycerol kinase (EC 2.7.1.30) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0662 | -51 | 4.7 | CTGGAAACGCTTTCAT |
| Lactobacillus rhamnosus GG | LGG_00644 | -51 | 5.1 | TAGAAAACGTTTTCAT |
|
Position: -64
Score: 4.7 Sequence: ATAAAAACGGTTACAA
Locus tag: LGG_00653
|
||||
| LGG_00653 | -64 | 4.7 | ATAAAAACGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galK | ||||
| Ortholog function: Galactokinase (EC 2.7.1.6) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0664 | -65 | 4.7 | ATAAAAACGGTTACAA |
| Lactobacillus rhamnosus GG | LGG_00653 | -64 | 4.7 | ATAAAAACGGTTACAA |
|
Position: -106
Score: 4.7 Sequence: TTGAAAGCGCTATCGT
Locus tag: LGG_00704
|
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| LGG_00704 | -106 | 4.7 | TTGAAAGCGCTATCGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yxjF | ||||
| Ortholog function: Predicted short-chain alcohol dehydrogenase | ||||
| Lactobacillus casei ATCC 334 | LSEI_0715 | -98 | 4.7 | TTGAAAGCGCTATCGT |
| Lactobacillus plantarum WCFS1 | lp_0060 | -96 | 4.4 | ATGAAAGCGTAGTCAA |
| Lactobacillus rhamnosus GG | LGG_00704 | -106 | 4.7 | TTGAAAGCGCTATCGT |
|
Position: -44
Score: 4.4 Sequence: ATGAAAACGGTTAACA
Locus tag: LGG_00706
|
||||
| LGG_00706 | -44 | 4.4 | ATGAAAACGGTTAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydgI | ||||
| Ortholog function: Putative NAD(P)H nitroreductase | ||||
| Lactobacillus casei ATCC 334 | LSEI_0717 | -98 | 4.7 | TTGAAAGCGCTATCGT |
| Lactobacillus plantarum WCFS1 | lp_0062 | -96 | 4.4 | ATGAAAGCGTAGTCAA |
| Lactobacillus rhamnosus GG | LGG_00706 | -106 | 4.7 | TTGAAAGCGCTATCGT |
|
Position: -275
Score: 4.2 Sequence: ATGCAAGCGTTTTACT
Locus tag: LGG_00792
|
||||
| LGG_00792 | -275 | 4.2 | ATGCAAGCGTTTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9) | ||||
| Lactobacillus acidophilus NCFM | LBA0430 | -85 | 4.6 | TTGCAAACGTTTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1204 | -103 | 4.9 | TTGAAAACGTTTTCGA |
| Lactobacillus casei ATCC 334 | LSEI_0808 | -229 | 4.2 | ATGCAAGCGTTTTACT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1474 | -89 | 4 | GTGCAATCGCTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0456 | -86 | 4.6 | GTGCAAACGTTTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0490 | -85 | 4.2 | TTGCAACCGTTTACGA |
| Lactobacillus plantarum WCFS1 | lp_2258 | -158 | 5.2 | TTGAAATCGCTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0414 | -120 | 4.1 | ATGCAAGCGGTTTACA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0419 | -125 | 4 | TTGCAAGCGTTTCATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0543 | -124 | 4.9 | TTGCAAACGCTTACAA |
| -102 | 4.2 | TTATAAGTGTTTTCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1251 | -109 | 4.6 | ATGAATACGTTATCAA |
|
Position: -95
Score: 4 Sequence: AGTAAAACGCTTGCAT
Locus tag: LGG_00793
|
||||
| LGG_00793 | -95 | 4 | AGTAAAACGCTTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccpA | ||||
| Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family | ||||
| Lactobacillus acidophilus NCFM | LBA0431 | -75 | 4.4 | CTGTAAACGTTTGCAA |
| Lactobacillus brevis ATCC 367 | LVIS_1203 | -107 | 4.7 | TCGAAAACGTTTTCAA |
| -49 | 4.1 | TTGAAAACGGATGAAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0809 | -94 | 4 | AGTAAAACGCTTGCAT |
| Lactobacillus helveticus DPC 4571 | lhv_0457 | -76 | 4.3 | ATGTAAACGTTTGCAC |
| Lactobacillus johnsonii NCC 533 | LJ0491 | -74 | 4 | TCGTAAACGGTTGCAA |
| Lactobacillus plantarum WCFS1 | lp_2256 | -121 | 5.2 | ATGAAAGCGATTTCAA |
| -51 | 4 | ATGAAAACGGATGAAA | ||
| Lactobacillus rhamnosus GG | LGG_00793 | -95 | 4 | AGTAAAACGCTTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0544 | -114 | 4.4 | ATGAAAACACTTATAA |
| -92 | 4.9 | TTGTAAGCGTTTGCAA | ||
| Oenococcus oeni PSU-1 | OEOE_0684 | -59 | 4.6 | ATGTAATCGCTTGCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1250 | -69 | 4.6 | TTGATAACGTATTCAT |
|
Position: -100
Score: 3.9 Sequence: TTGAGCGCGTTTTCAA
Locus tag: LGG_00921
|
||||
| LGG_00921 | -100 | 3.9 | TTGAGCGCGTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pgm | ||||
| Ortholog function: D-Ribose 1,5-phosphomutase (EC 5.4.2.7) | ||||
| Lactobacillus casei ATCC 334 | LSEI_0949 | -102 | 3.9 | TTGAGCGCGTTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0862 | -121 | 4.3 | ATAAAAGCGTTTAATA |
| Lactobacillus plantarum WCFS1 | lp_0764 | -40 | 4.4 | TTGTAAGCACTAACAA |
| Lactobacillus rhamnosus GG | LGG_00921 | -100 | 3.9 | TTGAGCGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0446 | -77 | 4.1 | AAAAAAACGCTTTCTG |
|
Position: -158
Score: 4.1 Sequence: ATGAAAAGGGTTTCCA
Locus tag: LGG_01221
|
||||
| LGG_01221 | -158 | 4.1 | ATGAAAAGGGTTTCCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pnuC | ||||
| Ortholog function: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter | ||||
| Lactobacillus acidophilus NCFM | LBA1653 | -190 | 4.7 | ATAAAAGCGTTTTAAA |
| Lactobacillus brevis ATCC 367 | LVIS_0311 | -188 | 4.6 | TTGAAAGCGCTTTATG |
| Lactobacillus johnsonii NCC 533 | LJ0643 | -173 | 4.6 | AAGAAAGCGCTATCTA |
| Lactobacillus rhamnosus GG | LGG_01221 | -158 | 4.1 | ATGAAAAGGGTTTCCA |
|
Position: -111
Score: 4.2 Sequence: AATAAAACGCTTGCAA
Locus tag: LGG_01320
|
||||
| LGG_01320 | -111 | 4.2 | AATAAAACGCTTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pdhA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1410 | -117 | 4.4 | ATGAAAGGGCTTGCAA |
| Lactobacillus casei ATCC 334 | LSEI_1305 | -111 | 4.2 | AATAAAACGCTTGCAA |
| -68 | 4.1 | TTGTAAAGATTTTCAT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1140 | -244 | 4.2 | ATGTAACGGCTTTCTT |
| -169 | 4.5 | ATGTAAGCGGTAACTT | ||
| Lactobacillus plantarum WCFS1 | lp_2154 | -118 | 4.1 | TTGGAAGGGCTTGCAA |
| -67 | 4.5 | ATGAAAACGATTACGA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0608 | -90 | 4.7 | ATGAAAGCGCTTGTAT |
| -40 | 4.3 | AAGCAATCGCTTACAT | ||
| Lactobacillus rhamnosus GG | LGG_01320 | -111 | 4.2 | AATAAAACGCTTGCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1085 | -115 | 4 | TGTAAAACGCTTGCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0153 | -216 | 4 | GTGATAACGATAACAA |
| -67 | 4.5 | TTGTAAGCGTTATATA | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0737 | -31 | 4.9 | GTGTAAGCGGTTACAA |
| Oenococcus oeni PSU-1 | OEOE_0328 | -53 | 5.1 | TTGAAAGCGCTTACAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1773 | -107 | 4 | TTTAAAACATTTTAAA |
| -40 | 4.8 | TAGAAAGCGCTTCCAT | ||
|
Position: -150
Score: 4.1 Sequence: TCGAAATCGCTTTCTT
Locus tag: LGG_01479
|
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| LGG_01479 | -150 | 4.1 | TCGAAATCGCTTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lplA1 | ||||
| Ortholog function: Lipoate-protein ligase A | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0180 | -101 | 4.7 | TTGTAATCGATTACAA |
| Lactobacillus casei ATCC 334 | LSEI_1473 | -101 | 4.1 | TCGAAATCGCTTTCTT |
| Lactobacillus fermentum IFO 3956 | LAF_1136 | -244 | 4.2 | ATGTAACGGCTTTCTT |
| -169 | 4.5 | ATGTAAGCGGTAACTT | ||
| Lactobacillus reuteri JCM 1112 | LAR_1565 | -104 | 4.7 | TTGCAAACGCTTACTA |
| Lactobacillus rhamnosus GG | LGG_01479 | -150 | 4.1 | TCGAAATCGCTTTCTT |
| Lactobacillus sakei subsp. sakei 23K | LSA0934 | -20 | 4.3 | ATGAAAGGGGTTTTAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0157 | -216 | 4 | GTGATAACGATAACAA |
| -67 | 4.5 | TTGTAAGCGTTATATA | ||
|
Position: -136
Score: 4.6 Sequence: ATTAAAGCGCTTTCCT
Position: -89
Score: 4.1 Sequence: GTGAAAGGGTTTGCAT
Locus tag: LGG_01836
|
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| LGG_01836 | -136 | 4.6 | ATTAAAGCGCTTTCCT | |
| -89 | 4.1 | GTGAAAGGGTTTGCAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus acidophilus NCFM | LBA1974 | -110 | 4.4 | GAAAAAGCGGTTTCAT |
| -78 | 4 | AAGATAGCGTTTTGAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0313 | -152 | 4.3 | TTGAAAGCGTGAACAA |
| Lactobacillus casei ATCC 334 | LSEI_1784 | -149 | 4 | GTTTAAGCGTTTTATA |
| -92 | 4.4 | ATGAAAGGGCTTGCAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_2034 | -76 | 4 | TTGATAGCACTTGCAA |
| Lactobacillus johnsonii NCC 533 | LJ1853 | -79 | 4.1 | CAGCAACCGCTTTCAA |
| Lactobacillus plantarum WCFS1 | lp_0849 | -390 | 4.3 | ATGTAAGCGTCATCAT |
| -86 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus rhamnosus GG | LGG_01836 | -136 | 4.6 | ATTAAAGCGCTTTCCT |
| -89 | 4.1 | GTGAAAGGGTTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1830 | -71 | 4.1 | TTTGTAACGCTTACAA |
|
Position: -85
Score: 4.4 Sequence: GTGAAAGCCTTTTCAA
Locus tag: LGG_01876
|
||||
| LGG_01876 | -85 | 4.4 | GTGAAAGCCTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) | ||||
| Lactobacillus johnsonii NCC 533 | LJ0149 | -38 | 5 | TTGAAACCGCTTTCTA |
| Lactobacillus plantarum WCFS1 | lp_3418 | -68 | 4.8 | AAGAAAACGCTTTCTT |
| Lactobacillus rhamnosus GG | LGG_01876 | -85 | 4.4 | GTGAAAGCCTTTTCAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0395 | -46 | 4.4 | ATGAAAGCGTATTATA |
|
Position: -50
Score: 3.8 Sequence: ATGAAAACTCTGTAAA
Locus tag: LGG_01968
|
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| LGG_01968 | -50 | 3.8 | ATGAAAACTCTGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: guaA | ||||
| Ortholog function: GMP synthase (EC 6.3.5.2) | ||||
| Lactobacillus johnsonii NCC 533 | LJ0229 | -120 | 4 | ATTAAAGCGCTATTTT |
| Lactobacillus plantarum WCFS1 | lp_0914 | -61 | 4.2 | TTGATAAGGGTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0139 | -44 | 3.8 | ATGTAACCGTTTAGCA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1537 | -75 | 4.2 | TTGAAAGCGTAATATT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0412 | -103 | 4.3 | TTGATAGCCTTTTCAT |
|
Position: -197
Score: 4 Sequence: CCGAAAGCGGTTACAA
Locus tag: LGG_02027
|
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| LGG_02027 | -197 | 4 | CCGAAAGCGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgB | ||||
| Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | ||||
| Lactobacillus acidophilus NCFM | LBA0680 | -55 | 4.3 | AAGTAAGCGCTTTCCG |
| Lactobacillus casei ATCC 334 | LSEI_2040 | -230 | 4.1 | TTGTAATCGCTGTTAA |
| -208 | 4.4 | CAGTAAGCGGTTACAA | ||
| Lactobacillus rhamnosus GG | LGG_02027 | -197 | 4 | CCGAAAGCGGTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1294 | -88 | 4 | GTGAAAGCTATTTCTT |
|
Position: -82
Score: 4.8 Sequence: TTGAAACCGTATACAA
Locus tag: LGG_02032
|
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| LGG_02032 | -82 | 4.8 | TTGAAACCGTATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbp | ||||
| Ortholog function: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2045 | -81 | 4.3 | CTGAAACCGTATACAA |
| -14 | 4.1 | AAGGAAGCTGTTTCAT | ||
| Lactobacillus rhamnosus GG | LGG_02032 | -82 | 4.8 | TTGAAACCGTATACAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0144 | -75 | 4.9 | TTGTAAGCGGTTTTAT |
|
Position: -153
Score: 3.9 Sequence: TTGATAGCGGATTATT
Position: -18
Score: 4 Sequence: AAGGGAGCGTTTACAA
Locus tag: LGG_02286
|
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| LGG_02286 | -153 | 3.9 | TTGATAGCGGATTATT | |
| -18 | 4 | AAGGGAGCGTTTACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gabD | ||||
| Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) | ||||
| Lactobacillus acidophilus NCFM | LBA1632 | -66 | 4.7 | TTGTAAACGCTTTATA |
| Lactobacillus brevis ATCC 367 | LVIS_0323 | -150 | 4.9 | TTGAAAACGGTTAAAT |
| Lactobacillus casei ATCC 334 | LSEI_2278 | -18 | 4.1 | AAGGGAGCGTTTTCAA |
| Lactobacillus fermentum IFO 3956 | LAF_0045 | -62 | 4.3 | GAAAAAGCGGTTACAA |
| Lactobacillus johnsonii NCC 533 | LJ0671 | -44 | 4.6 | AAGAAAGCGCTTTATA |
| Lactobacillus plantarum WCFS1 | lp_3092 | -45 | 4 | GATTAACCGTTTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0033 | -132 | 4.1 | ATAAAAGGGCTTTTAT |
| -30 | 4.6 | ATGTAAGCGTTTATTT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1298 | -37 | 4.3 | ATGTAAGCGTACTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1821 | -55 | 4.8 | ATGAAAGCGTATTCTT |
|
Position: -115
Score: 4.5 Sequence: GAGAAAGCGCTTATAA
Locus tag: LGG_02307
|
||||
| LGG_02307 | -115 | 4.5 | GAGAAAGCGCTTATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cad | ||||
| Ortholog function: Predicted pheromone precursor lipoprotein, related to Cad | ||||
| Lactobacillus casei ATCC 334 | LSEI_2296 | -115 | 4.5 | GAGAAAGCGCTTATAA |
| Lactobacillus rhamnosus GG | LGG_02307 | -115 | 4.5 | GAGAAAGCGCTTATAA |
| Oenococcus oeni PSU-1 | OEOE_1090 | -237 | 4.2 | TTGACACCGGTTTTAT |
| -101 | 5.1 | TTGAAAGCGTTTCCAA | ||
|
Position: -193
Score: 4.4 Sequence: TTGCAAGCGTTTACGT
Locus tag: LGG_02523
|
||||
| LGG_02523 | -193 | 4.4 | TTGCAAGCGTTTACGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ldh | ||||
| Ortholog function: L-lactate dehydrogenase (EC 1.1.1.27) | ||||
| Lactobacillus acidophilus NCFM | LBA0271 | -205 | 3.8 | ATGAAACCAGTATTAT |
| Lactobacillus casei ATCC 334 | LSEI_2549 | -193 | 4 | CTGGAAACGCTTACGT |
| Lactobacillus rhamnosus GG | LGG_02523 | -193 | 4.4 | TTGCAAGCGTTTACGT |
|
Position: -36
Score: 4.7 Sequence: ATGAATGCGTTTTCTT
Locus tag: LGG_02577
|
||||
| LGG_02577 | -36 | 4.7 | ATGAATGCGTTTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacX | ||||
| Ortholog function: Aldose 1-epimerase | ||||
| Lactobacillus casei ATCC 334 | LSEI_2598 | -36 | 4.5 | TTGAATGCGTTTTCGT |
| Lactobacillus johnsonii NCC 533 | LJ0171 | -84 | 4.2 | ATGTTATCGCTTACAG |
| Lactobacillus rhamnosus GG | LGG_02577 | -36 | 4.7 | ATGAATGCGTTTTCTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1763 | -76 | 4.3 | AAGAAAGCCTTTACAT |
|
Position: -170
Score: 4.7 Sequence: TTAAATGCGCTTTCAT
Locus tag: LGG_02679
|
||||
| LGG_02679 | -170 | 4.7 | TTAAATGCGCTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lhv_0924 | ||||
| Ortholog function: Predicted transcriptional regulator, GntR family | ||||
| Lactobacillus helveticus DPC 4571 | lhv_0924 | -236 | 5.2 | TTGTAAGCGATTTCAA |
| -149 | 4.7 | TAGGAACCGCTTTCAT | ||
| Lactobacillus plantarum WCFS1 | lp_0152 | -193 | 4.2 | ATGTAGCCGGTTACAT |
| Lactobacillus rhamnosus GG | LGG_02679 | -170 | 4.7 | TTAAATGCGCTTTCAT |
| Oenococcus oeni PSU-1 | OEOE_1211 | -167 | 4.4 | ATGAAATCGCTACCAT |
| -115 | 4 | ATGTAAACTCTTTTTT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1777 | -141 | 4.7 | TTGAATTCGCTTTCAT |
|
Position: -58
Score: 4.5 Sequence: TTGCAAGCGCTTACGA
Locus tag: LGG_02680
|
||||
| LGG_02680 | -58 | 4.5 | TTGCAAGCGCTTACGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fucR | ||||
| Ortholog function: L-fucose utilization transcriptional regulator FucR, DeoR family | ||||
| Lactobacillus plantarum WCFS1 | lp_3598 | -279 | 4.9 | TTGTAAGCGCATACAT |
| -189 | 3.9 | TAGTAATCGGTAAAAA | ||
| Lactobacillus rhamnosus GG | LGG_02680 | -58 | 4.5 | TTGCAAGCGCTTACGA |
|
Position: -64
Score: 4.8 Sequence: ATGTAAGCGGTTAAAT
Locus tag: LGG_02691
|
||||
| LGG_02691 | -64 | 4.8 | ATGTAAGCGGTTAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhaY | ||||
| Ortholog function: Predicted L-rhamnose permease RhaY | ||||
| Lactobacillus plantarum WCFS1 | lp_3596 | -33 | 4.7 | ATGAAACCGCTTACCA |
| Lactobacillus rhamnosus GG | LGG_02691 | -64 | 4.8 | ATGTAAGCGGTTAAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1751 | -73 | 4.6 | TTGAAAACGGTTAATA |
|
Position: -47
Score: 4.4 Sequence: AAGAAAACGCTACCAT
Locus tag: LGG_02722
|
||||
| LGG_02722 | -47 | 4.4 | AAGAAAACGCTACCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sorD | ||||
| Ortholog function: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2729 | -304 | 4.1 | ATGTAACGGCTTATAT |
| Lactobacillus rhamnosus GG | LGG_02722 | -47 | 4.4 | AAGAAAACGCTACCAT |
|
Position: -137
Score: 4.9 Sequence: TTAAAACCGCTTTCAT
Locus tag: LGG_02723
|
||||
| LGG_02723 | -137 | 4.9 | TTAAAACCGCTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: araD | ||||
| Ortholog function: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1741 | -79 | 4.4 | TTGAAAGGGCTTTCGA |
| Lactobacillus fermentum IFO 3956 | LAF_1557 | -111 | 4.6 | ATGAAAACGGTTTATT |
| Lactobacillus plantarum WCFS1 | lp_3555 | -63 | 4.6 | TTGAAAGGGCTTTCTA |
| Lactobacillus reuteri JCM 1112 | LAR_0469 | -63 | 4.7 | ATGAAAGCGCGTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1857 | -78 | 4.7 | TTGAAACCGTTTTATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0855 | -104 | 5 | TTGTAAGCGTTTCCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0164 | -48 | 4.9 | ATGAATACGCTTTCAA |
|
Position: -68
Score: 4.7 Sequence: TTGTAAGCGCAATCAA
Locus tag: LGG_02733
|
||||
| LGG_02733 | -68 | 4.7 | TTGTAAGCGCAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ulaG | ||||
| Ortholog function: Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2739 | -69 | 4.2 | TTGTAAGCGTATCCAG |
| Lactobacillus rhamnosus GG | LGG_02733 | -68 | 4.7 | TTGTAAGCGCAATCAA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1998 | -53 | 4.9 | ATGTAAGCGCATACAT |
| -19 | 4.1 | TAGAAAGGGTTTAAAT | ||
|
Position: -77
Score: 4.8 Sequence: ATGAATGCGGTTACAA
Locus tag: LGG_02762
|
||||
| LGG_02762 | -77 | 4.8 | ATGAATGCGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: LBA0143 | ||||
| Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20); Alpha-glucosidase, family 31 of glycosyl hydrolase | ||||
| Lactobacillus casei ATCC 334 | LSEI_2769 | -90 | 4.8 | TTGAATGCGGTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_0152 | -130 | 4.7 | GTAAAAGCGCTTACAT |
| Lactobacillus rhamnosus GG | LGG_02762 | -77 | 4.8 | ATGAATGCGGTTACAA |
|
Position: -91
Score: 4.2 Sequence: CTGAAAGCGCTTGTAA
Locus tag: LGG_02823
|
||||
| LGG_02823 | -91 | 4.2 | CTGAAAGCGCTTGTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pts20B | ||||
| Ortholog function: PTS system, cellobiose-specific IIB component (EC 2.7.1.69) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2817 | -89 | 4.6 | TTGAAAACGCTTGTAA |
| -39 | 4.3 | CAGAAAACGATTACAT | ||
| Lactobacillus rhamnosus GG | LGG_02823 | -91 | 4.2 | CTGAAAGCGCTTGTAA |
|
Position: -65
Score: 4.5 Sequence: TTGTCAGCGATTACAT
Locus tag: LGG_02912
|
||||
| LGG_02912 | -65 | 4.5 | TTGTCAGCGATTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: Mannitol-specific PTS system, IIBC component (EC 2.7.1.69) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2888 | -65 | 4.5 | TTGTCAGCGATTACAT |
| Lactobacillus plantarum WCFS1 | lp_0230 | -63 | 4.8 | TTGAAACCGCTTACCA |
| Lactobacillus rhamnosus GG | LGG_02912 | -65 | 4.5 | TTGTCAGCGATTACAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1620 | -56 | 4.2 | CAGTAAACGTTATCAT |