Regulog NrtR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrtR |
| Regulation mode: | |
| Biological process: | NAD biosynthesis |
| Effector: | Adenosine diphosphate ribose |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - NrtR
- By TF family - NrtR
- By effector - Adenosine diphosphate ribose
- By pathway - NAD biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus casei ATCC 334 | 2 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus fermentum IFO 3956 | 2 | 1 |
| Lactobacillus helveticus DPC 4571 | 2 | 1 |
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 1 | 1 |
| Lactobacillus reuteri JCM 1112 | 2 | 1 |
| Lactobacillus rhamnosus GG | 2 | 1 |
| Lactobacillus sakei subsp. sakei 23K | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| pncA |
Gene: LBA1422: Nicotinamidase (EC 3.5.1.19) |
Gene: LVIS_0241: Nicotinamidase (EC 3.5.1.19) |
*
Lactobacillus casei ATCC 334 Site: position = -40 score = 6.2844 sequence = TTTAAGTAAAAAATACTTTTA Gene: LSEI_2767: Nicotinamidase (EC 3.5.1.19) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -55 score = 6.03384 sequence = TTTAGGTAAGTTATACTTTTA Gene: LBUL_0279: Nicotinamidase (EC 3.5.1.19) |
*
Lactobacillus fermentum IFO 3956 Site: position = -54 score = 6.03384 sequence = TTTAGGTATTTTTTACTTTAA Gene: LAF_1390: Nicotinamidase (EC 3.5.1.19) |
Gene: lhv_0929: Nicotinamidase (EC 3.5.1.19) |
Gene: LJ1274: Nicotinamidase (EC 3.5.1.19) |
Gene: lp_2612: Nicotinamidase (EC 3.5.1.19) |
Gene: LAR_0149: Nicotinamidase (EC 3.5.1.19) |
*
Lactobacillus rhamnosus GG Site: position = -41 score = 6.53031 sequence = TTTAAGTAAATTTTACTTTAA Gene: LGG_02764: Nicotinamidase (EC 3.5.1.19) |
Gene: LSA1766: Nicotinamidase (EC 3.5.1.19) |
|
|
Gene: OEOE_0368: Nicotinamidase (EC 3.5.1.19) |
Gene: PEPE_1245: Nicotinamidase (EC 3.5.1.19) |
Nicotinamidase (EC 3.5.1.19) |
| pncB |
|
|
Gene: LSEI_2766: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: LBUL_0276: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: LAF_1391: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Lactobacillus helveticus DPC 4571 Site: position = -74 score = 5.96768 sequence = TAAAAGTAACTTAGACTTTTA Gene: lhv_0930: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
|
Gene: lp_2771: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
*
Lactobacillus reuteri JCM 1112 Site: position = -75 score = 6.05633 sequence = TAAAAGTTAATCATACTTTTA Gene: LAR_0148: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
Gene: LGG_02765: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
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|
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Gene: OEOE_0890: Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
|
Nicotinate phosphoribosyltransferase (EC 2.4.2.11) |
| CRON 2. | ||||||||||||||||
| niaP |
|
|
Gene: LSEI_2277: Niacin transporter NiaP |
|
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|
*
Lactobacillus plantarum WCFS1 Site: position = -61 score = 5.78327 sequence = TAAAGGTAAAAAATACCTAAA Gene: lp_2514: Niacin transporter NiaP |
|
Gene: LGG_02281: Niacin transporter NiaP |
Gene: LSA1529: Niacin transporter NiaP |
|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -40 score = 6.39555 sequence = TAAAAGTAAAAAATACTTTTA Gene: LEUM_0911: Niacin transporter NiaP |
|
Gene: PEPE_0213: Niacin transporter NiaP |
Niacin transporter NiaP |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |