Regulog NrtR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	NrtR
Regulation mode:
Biological process:	NAD biosynthesis
Effector:	Adenosine diphosphate ribose
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By trascription factor - NrtR
By TF family - NrtR
By effector - Adenosine diphosphate ribose
By pathway - NAD biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	1	1
Lactobacillus fermentum IFO 3956	2	1
Lactobacillus helveticus DPC 4571	2	1
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	1	1
Lactobacillus reuteri JCM 1112	2	1
Lactobacillus rhamnosus GG	2	1
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	1	1
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
pncA	Lactobacillus acidophilus NCFM Gene: LBA1422: Nicotinamidase (EC 3.5.1.19)	Lactobacillus brevis ATCC 367 Gene: LVIS_0241: Nicotinamidase (EC 3.5.1.19)	* Lactobacillus casei ATCC 334 Site: position = -40 score = 6.2844 sequence = TTTAAGTAAAAAATACTTTTA Gene: LSEI_2767: Nicotinamidase (EC 3.5.1.19)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -55 score = 6.03384 sequence = TTTAGGTAAGTTATACTTTTA Gene: LBUL_0279: Nicotinamidase (EC 3.5.1.19)	* Lactobacillus fermentum IFO 3956 Site: position = -54 score = 6.03384 sequence = TTTAGGTATTTTTTACTTTAA Gene: LAF_1390: Nicotinamidase (EC 3.5.1.19)	Lactobacillus helveticus DPC 4571 Gene: lhv_0929: Nicotinamidase (EC 3.5.1.19)	Lactobacillus johnsonii NCC 533 Gene: LJ1274: Nicotinamidase (EC 3.5.1.19)	Lactobacillus plantarum WCFS1 Gene: lp_2612: Nicotinamidase (EC 3.5.1.19)	Lactobacillus reuteri JCM 1112 Gene: LAR_0149: Nicotinamidase (EC 3.5.1.19)	* Lactobacillus rhamnosus GG Site: position = -41 score = 6.53031 sequence = TTTAAGTAAATTTTACTTTAA Gene: LGG_02764: Nicotinamidase (EC 3.5.1.19)	Lactobacillus sakei subsp. sakei 23K Gene: LSA1766: Nicotinamidase (EC 3.5.1.19)	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0368: Nicotinamidase (EC 3.5.1.19)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1245: Nicotinamidase (EC 3.5.1.19)	Nicotinamidase (EC 3.5.1.19)
pncB	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2766: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0276: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Lactobacillus fermentum IFO 3956 Gene: LAF_1391: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	* Lactobacillus helveticus DPC 4571 Site: position = -74 score = 5.96768 sequence = TAAAAGTAACTTAGACTTTTA Gene: lhv_0930: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_2771: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	* Lactobacillus reuteri JCM 1112 Site: position = -75 score = 6.05633 sequence = TAAAAGTTAATCATACTTTTA Gene: LAR_0148: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Lactobacillus rhamnosus GG Gene: LGG_02765: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Lactobacillus sakei subsp. sakei 23K	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_0890: Nicotinate phosphoribosyltransferase (EC 2.4.2.11)	Pediococcus pentosaceus ATCC 25745	Nicotinate phosphoribosyltransferase (EC 2.4.2.11)

CRON 2.
niaP	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367	Lactobacillus casei ATCC 334 Gene: LSEI_2277: Niacin transporter NiaP	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -61 score = 5.78327 sequence = TAAAGGTAAAAAATACCTAAA Gene: lp_2514: Niacin transporter NiaP	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_02281: Niacin transporter NiaP	Lactobacillus sakei subsp. sakei 23K Gene: LSA1529: Niacin transporter NiaP	Lactobacillus salivarius subsp. salivarius UCC118	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -40 score = 6.39555 sequence = TAAAAGTAAAAAATACTTTTA Gene: LEUM_0911: Niacin transporter NiaP	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0213: Niacin transporter NiaP	Niacin transporter NiaP

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NrtR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --