Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of AgaR2 regulog to Lactobacillus johnsonii NCC 533

Reference regulog properties
Source regulog: AgaR2 - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: N-acetylgalactosamine utilization
Effector: N-acetylgalactosamine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus johnsonii NCC 533
Orthologous TF(s) LJ0116
Regulated genes 2
Built upon 6 sites [see more]
Predicted regulatory interactions in Lactobacillus johnsonii NCC 533
Locus tag Position Score Sequence
Position: -40
Score: 5.8
Sequence: AGGTGGTACTAACCAGTT
Locus tag: LJ0116
LJ0116 -40 5.8 AGGTGGTACTAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: agaR2
Ortholog function: N-acetylgalactosamine utilization transcriptional regulator AgaR2, GntR family
Lactobacillus helveticus DPC 4571 lhv_0513 -85 6 AACTGGTTATAACCACTT
-31 6 AAGTGGTACTAACCAGTT
Lactobacillus johnsonii NCC 533 LJ0116 -40 5.8 AGGTGGTACTAACCAGTT
Lactobacillus rhamnosus GG LGG_00332 -30 4.5 ATGTGGTTGGTACCACGT
Pediococcus pentosaceus ATCC 25745 PEPE_1756 -117 5.6 AACTGGTACCAACCAGTT
Position: -97
Score: 5.8
Sequence: AAGTGGTTGCAACCAGTT
Locus tag: LJ0119
LJ0119 -97 5.8 AAGTGGTTGCAACCAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gadV
Ortholog function: Predicted galactosamine disaccharide-specific PTS, EIIB component (EC 2.7.1.69)
Lactobacillus johnsonii NCC 533 LJ0119 -97 5.8 AAGTGGTTGCAACCAGTT
Lactobacillus rhamnosus GG LGG_00337 -30 4.5 ATGTGGTTGGTACCACGT
Pediococcus pentosaceus ATCC 25745 PEPE_1759 -117 5.6 AACTGGTACCAACCAGTT
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