Statistics of regulated genes

Genome	Genes	Operons
Lactobacillus acidophilus NCFM	1	1
Lactobacillus brevis ATCC 367	3	2
Lactobacillus casei ATCC 334	3	2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1	3	2
Lactobacillus reuteri JCM 1112	2	2
Lactobacillus rhamnosus GG	3	2
Lactobacillus sakei subsp. sakei 23K	3	2
Lactobacillus salivarius subsp. salivarius UCC118	3	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	3	2
Oenococcus oeni PSU-1	3	2
Pediococcus pentosaceus ATCC 25745	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes																Function
CRON 1.
mleS	* Lactobacillus acidophilus NCFM Site: position = -363 score = 4.65449 sequence = TATTAATTTCATTTAAA Gene: LBA1075: Malolactic enzyme	* Lactobacillus brevis ATCC 367 Site: position = -103 score = 6.02285 sequence = TATAAAATAATTTTATA Gene: LVIS_2203: Malolactic enzyme	* Lactobacillus casei ATCC 334 Site: position = -389 score = 5.68157 sequence = TATAAAAATATTTTATC Gene: LSEI_0740: Malolactic enzyme	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	* Lactobacillus plantarum WCFS1 Site: position = -138 score = 5.35247 sequence = TATTTAATATATTTATA Gene: lp_1118: Malolactic enzyme	* Lactobacillus reuteri JCM 1112 Site: position = -100 score = 5.65007 sequence = TATCAATTTTATTTATA Gene: LAR_1441: Malolactic enzyme	* Lactobacillus rhamnosus GG Site: position = -118 score = 5.68157 sequence = TATAAAAATATTTTATC Gene: LGG_00726: Malolactic enzyme	* Lactobacillus sakei subsp. sakei 23K Site: position = -97 score = 5.33265 sequence = TATAAATCTATTTTATC Gene: LSA0441: Malolactic enzyme	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -107 score = 5.72838 sequence = TATAAATAATATTAATA Gene: LSL_1313: Malolactic enzyme	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -106 score = 6.02285 sequence = TATAAAATAAATTTATA Gene: LEUM_1005: Malolactic enzyme	* Oenococcus oeni PSU-1 Site: position = -83 score = 5.08913 sequence = TATAAGATAATTTTATC Gene: OEOE_1564: Malolactic enzyme	* Pediococcus pentosaceus ATCC 25745 Site: position = -91 score = 6.00112 sequence = TATAAAAAATATTTATA Gene: PEPE_1617: Malolactic enzyme	Malolactic enzyme
mleP	Lactobacillus acidophilus NCFM	Lactobacillus brevis ATCC 367 Gene: LVIS_2202: L-malate permease	Lactobacillus casei ATCC 334 Gene: LSEI_0741: L-malate permease	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1 Gene: lp_1119: L-malate permease	Lactobacillus reuteri JCM 1112	Lactobacillus rhamnosus GG Gene: LGG_00727: L-malate permease	Lactobacillus sakei subsp. sakei 23K Gene: LSA0442: L-malate permease	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1312: L-malate permease	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1006: L-malate permease	Oenococcus oeni PSU-1 Gene: OEOE_1563: L-malate permease	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_1616: L-malate permease	L-malate permease
CRON 2.
mleR	Lactobacillus acidophilus NCFM Gene: LBA1074: Malate utilization transcrtional regulator MleR, LysR family	* Lactobacillus brevis ATCC 367 Site: position = -52 score = 6.02285 sequence = TATAAAATTATTTTATA Gene: LVIS_2204: Malate utilization transcrtional regulator MleR, LysR family	* Lactobacillus casei ATCC 334 Site: position = -76 score = 5.68157 sequence = GATAAAATATTTTTATA Gene: LSEI_0739: Malate utilization transcrtional regulator MleR, LysR family	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_1565: Malate utilization transcrtional regulator MleR, LysR family	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	*2 Lactobacillus plantarum WCFS1 Gene: lp_1115: Malate utilization transcrtional regulator MleR, LysR family Site: position = -53 score = 5.35247 sequence = TATAAATATATTAAATA Gene: lp_1116: Malate utilization transcrtional regulator MleR, LysR family	*2 Lactobacillus reuteri JCM 1112 Site: position = -53 score = 5.65007 sequence = TATAAATAAAATTGATA Gene: LAR_1442: Malate utilization transcrtional regulator MleR, LysR family Gene: LAR_1437: Malate utilization transcrtional regulator MleR, LysR family	* Lactobacillus rhamnosus GG Site: position = -322 score = 5.68157 sequence = GATAAAATATTTTTATA Gene: LGG_00725: Malate utilization transcrtional regulator MleR, LysR family	* Lactobacillus sakei subsp. sakei 23K Site: position = -51 score = 5.33265 sequence = GATAAAATAGATTTATA Gene: LSA0440: Malate utilization transcrtional regulator MleR, LysR family	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -51 score = 5.72838 sequence = TATTAATATTATTTATA Gene: LSL_1314: Malate utilization transcrtional regulator MleR, LysR family	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -53 score = 6.02285 sequence = TATAAATTTATTTTATA Gene: LEUM_1004: Malate utilization transcrtional regulator MleR, LysR family	* Oenococcus oeni PSU-1 Site: position = -16 score = 5.08913 sequence = GATAAAATTATCTTATA Gene: OEOE_1565: Malate utilization transcrtional regulator MleR, LysR family	* Pediococcus pentosaceus ATCC 25745 Site: position = -61 score = 6.00112 sequence = TATAAATATTTTTTATA Gene: PEPE_1618: Malate utilization transcrtional regulator MleR, LysR family	Malate utilization transcrtional regulator MleR, LysR family

Export

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD