Regulog SdaR - Lactobacillaceae

Properties
Regulator type:	Transcription factor
Regulator family:	SdaR
Regulation mode:	repressor
Biological process:	Glycerate utilization
Effector:	D-glycerate
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Lactobacillaceae
By trascription factor - SdaR
By TF family - SdaR
By effector - D-glycerate
By pathway - Glycerate utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367	3	2
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112	3	2
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K	2	1
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
sdaR	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -190 score = 4.81468 sequence = AATTGATCAATGTAACTATG Gene: LVIS_0411: Glycerate utilization transcriptional regulator SdaR, SdaR family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	* Lactobacillus reuteri JCM 1112 Site: position = -338 score = 4.99688 sequence = CATAGTTCCTATTATCAAAA Gene: LAR_0599: Glycerate utilization transcriptional regulator SdaR, SdaR family	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA0710: Glycerate utilization transcriptional regulator SdaR, SdaR family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1	Pediococcus pentosaceus ATCC 25745	Glycerate utilization transcriptional regulator SdaR, SdaR family

CRON 2.
grtP	Lactobacillus acidophilus NCFM	* Lactobacillus brevis ATCC 367 Site: position = -123 score = 4.81468 sequence = CATAGTTACATTGATCAATT Gene: LVIS_0412: D-glycerate transporter, GntP family	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus fermentum IFO 3956 Gene: LAF_0491: D-glycerate transporter, GntP family	Lactobacillus helveticus DPC 4571	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	* Lactobacillus reuteri JCM 1112 Site: position = -172 score = 4.99688 sequence = TTTTGATAATAGGAACTATG Gene: LAR_0600: D-glycerate transporter, GntP family	Lactobacillus rhamnosus GG	* Lactobacillus sakei subsp. sakei 23K Site: position = -38 score = 4.86187 sequence = GATTGTGTTATATAACAAAA Gene: LSA0711: D-glycerate transporter, GntP family	Lactobacillus salivarius subsp. salivarius UCC118	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_1479: D-glycerate transporter, GntP family	Pediococcus pentosaceus ATCC 25745	D-glycerate transporter, GntP family
garK	Lactobacillus acidophilus NCFM Gene: LBA0723: Glycerate kinase (EC 2.7.1.31)	Lactobacillus brevis ATCC 367 Gene: LVIS_0413: Glycerate kinase (EC 2.7.1.31)	Lactobacillus casei ATCC 334	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0949: Glycerate kinase (EC 2.7.1.31)	Lactobacillus fermentum IFO 3956 Gene: LAF_0492: Glycerate kinase (EC 2.7.1.31)	Lactobacillus helveticus DPC 4571 Gene: lhv_0764: Glycerate kinase (EC 2.7.1.31)	Lactobacillus johnsonii NCC 533 Gene: LJ1251: Glycerate kinase (EC 2.7.1.31)	Lactobacillus plantarum WCFS1	Lactobacillus reuteri JCM 1112 Gene: LAR_0601: Glycerate kinase (EC 2.7.1.31)	Lactobacillus rhamnosus GG	Lactobacillus sakei subsp. sakei 23K Gene: LSA0712: Glycerate kinase (EC 2.7.1.31)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_1707: Glycerate kinase (EC 2.7.1.31)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Oenococcus oeni PSU-1 Gene: OEOE_1478: Glycerate kinase (EC 2.7.1.31)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0955: Glycerate kinase (EC 2.7.1.31)	Glycerate kinase (EC 2.7.1.31)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SdaR - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --