Regulog SdaR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | SdaR |
| Regulation mode: | repressor |
| Biological process: | Glycerate utilization |
| Effector: | D-glycerate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - SdaR
- By TF family - SdaR
- By effector - D-glycerate
- By pathway - Glycerate utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 3 | 2 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | 3 | 2 |
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| sdaR |
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Lactobacillus brevis ATCC 367 Site: position = -190 score = 4.81468 sequence = AATTGATCAATGTAACTATG Gene: LVIS_0411: Glycerate utilization transcriptional regulator SdaR, SdaR family |
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Lactobacillus reuteri JCM 1112 Site: position = -338 score = 4.99688 sequence = CATAGTTCCTATTATCAAAA Gene: LAR_0599: Glycerate utilization transcriptional regulator SdaR, SdaR family |
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Gene: LSA0710: Glycerate utilization transcriptional regulator SdaR, SdaR family |
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Glycerate utilization transcriptional regulator SdaR, SdaR family |
| CRON 2. | ||||||||||||||||
| grtP |
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Lactobacillus brevis ATCC 367 Site: position = -123 score = 4.81468 sequence = CATAGTTACATTGATCAATT Gene: LVIS_0412: D-glycerate transporter, GntP family |
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Gene: LAF_0491: D-glycerate transporter, GntP family |
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Lactobacillus reuteri JCM 1112 Site: position = -172 score = 4.99688 sequence = TTTTGATAATAGGAACTATG Gene: LAR_0600: D-glycerate transporter, GntP family |
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Lactobacillus sakei subsp. sakei 23K Site: position = -38 score = 4.86187 sequence = GATTGTGTTATATAACAAAA Gene: LSA0711: D-glycerate transporter, GntP family |
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Gene: OEOE_1479: D-glycerate transporter, GntP family |
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D-glycerate transporter, GntP family |
| garK |
Gene: LBA0723: Glycerate kinase (EC 2.7.1.31) |
Gene: LVIS_0413: Glycerate kinase (EC 2.7.1.31) |
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Gene: LBUL_0949: Glycerate kinase (EC 2.7.1.31) |
Gene: LAF_0492: Glycerate kinase (EC 2.7.1.31) |
Gene: lhv_0764: Glycerate kinase (EC 2.7.1.31) |
Gene: LJ1251: Glycerate kinase (EC 2.7.1.31) |
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Gene: LAR_0601: Glycerate kinase (EC 2.7.1.31) |
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Gene: LSA0712: Glycerate kinase (EC 2.7.1.31) |
Gene: LSL_1707: Glycerate kinase (EC 2.7.1.31) |
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Gene: OEOE_1478: Glycerate kinase (EC 2.7.1.31) |
Gene: PEPE_0955: Glycerate kinase (EC 2.7.1.31) |
Glycerate kinase (EC 2.7.1.31) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |