Regulog ExuR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Glucuronate utilization; Galacturonate utilization |
| Effector: | Galacturonate; Glucuronate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By TF family - LacI
- By effector - Galacturonate
- By effector - Glucuronate
- By pathway - Glucuronate utilization
- By pathway - Galacturonate utilization
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 3 | 1 |
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus rhamnosus GG | ||
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 |
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| uxaT |
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Lactobacillus brevis ATCC 367 Site: position = -215 score = 5.26355 sequence = ATGTTAACGTGTGCAG Gene: LVIS_0148: Predicted hexuronate transporter |
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Predicted hexuronate transporter |
| uxaE |
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Gene: LVIS_0149: Tagaturonate epimerase |
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Tagaturonate epimerase |
| uxaC |
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Lactobacillus brevis ATCC 367 Gene: LVIS_0135: Uronate isomerase (EC 5.3.1.12) Gene: LVIS_0150: Uronate isomerase (EC 5.3.1.12) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -38 score = 5.91518 sequence = ATGTTAACGATAACAT Gene: LSA0129: Uronate isomerase (EC 5.3.1.12) |
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Uronate isomerase (EC 5.3.1.12) |
| exuR |
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Gene: LVIS_0147: Predicted hexuronate utilization transcriptional regulator ExuR, LacI family |
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Gene: LSA0130: Predicted hexuronate utilization transcriptional regulator ExuR, LacI family |
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Predicted hexuronate utilization transcriptional regulator ExuR, LacI family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |