Propagation of CcpA regulog to Lactobacillus acidophilus NCFM
| Source regulog: | CcpA - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus acidophilus NCFM |
| Orthologous TF(s) | LBA0431 |
| Regulated genes | 38 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -54
Score: 4.6 Sequence: TTGCAACCGATTTCAT
Locus tag: LBA0225
|
||||
| LBA0225 | -54 | 4.6 | TTGCAACCGATTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglA | ||||
| Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0225 | -54 | 4.6 | TTGCAACCGATTTCAT |
| Lactobacillus plantarum WCFS1 | lp_2778 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Oenococcus oeni PSU-1 | OEOE_0340 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0283 | -58 | 4.5 | TCGTAAGCGGTTTCAT |
|
Position: -220
Score: 4.9 Sequence: ATGTAAACGCTTTTAT
Position: -188
Score: 4.5 Sequence: ATGATAACGTATTCAA
Position: -31
Score: 4.6 Sequence: AAGATAACGCTTACAT
Locus tag: LBA0400
|
||||
| LBA0400 | -220 | 4.9 | ATGTAAACGCTTTTAT | |
| -188 | 4.5 | ATGATAACGTATTCAA | ||
| -31 | 4.6 | AAGATAACGCTTACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrB | ||||
| Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26) | ||||
| Lactobacillus acidophilus NCFM | LBA0400 | -220 | 4.9 | ATGTAAACGCTTTTAT |
| -188 | 4.5 | ATGATAACGTATTCAA | ||
| -31 | 4.6 | AAGATAACGCTTACAT | ||
| Lactobacillus johnsonii NCC 533 | LJ0518 | -214 | 4.7 | GTGTAAGCGTTTTAAA |
| -184 | 4.3 | ATGATAGCGTATTCTA | ||
| -37 | 4.6 | AAGAATGCGTTTACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0187 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1793 | -188 | 4.5 | TTGTAAACGCTTTTCA |
| -163 | 4.3 | ATACAACCGTTTACAT | ||
| -59 | 4.1 | TATCAAACGTTTACAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0065 | -121 | 4.1 | ATTTAACCGCTTTTTT |
| -33 | 4.5 | AAGAATACGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0519 | -213 | 4.3 | ATGCAAGCGCTTTACA |
| -59 | 4.6 | GTGTAAGCGGTTTTAT | ||
|
Position: -219
Score: 4.7 Sequence: ATGTAAGCGTTATCTT
Position: -62
Score: 4.6 Sequence: TTGAATACGTTATCAT
Position: -30
Score: 4.9 Sequence: ATAAAAGCGTTTACAT
Locus tag: LBA0401
|
||||
| LBA0401 | -219 | 4.7 | ATGTAAGCGTTATCTT | |
| -62 | 4.6 | TTGAATACGTTATCAT | ||
| -30 | 4.9 | ATAAAAGCGTTTACAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scrA | ||||
| Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0401 | -219 | 4.7 | ATGTAAGCGTTATCTT |
| -30 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1578 | -126 | 4.4 | TTGGCAGCGATTTCAA |
| -57 | 4.5 | AGAAAAGCGCTTACAA | ||
| Lactobacillus johnsonii NCC 533 | LJ0519 | -214 | 4.6 | ATGTAAACGCATTCTT |
| -37 | 4.4 | TTTAAAACGCTTACAC | ||
| Lactobacillus plantarum WCFS1 | lp_0185 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1792 | -183 | 4.2 | ATGTAAACGTTTGATA |
| -54 | 4.5 | TGAAAAGCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0066 | -52 | 4.2 | CATTAAGCGTTTTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0518 | -212 | 4.3 | ATAAAACCGCTTACAC |
| -157 | 4 | ATGTCAGCGTTTCAAA | ||
| -58 | 4.1 | TGTAAAGCGCTTGCAT | ||
|
Position: -85
Score: 4.6 Sequence: TTGCAAACGTTTACAG
Locus tag: LBA0430
|
||||
| LBA0430 | -85 | 4.6 | TTGCAAACGTTTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepQ | ||||
| Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9) | ||||
| Lactobacillus acidophilus NCFM | LBA0430 | -85 | 4.6 | TTGCAAACGTTTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1204 | -103 | 4.9 | TTGAAAACGTTTTCGA |
| Lactobacillus casei ATCC 334 | LSEI_0808 | -229 | 4.2 | ATGCAAGCGTTTTACT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1474 | -89 | 4 | GTGCAATCGCTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0456 | -86 | 4.6 | GTGCAAACGTTTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0490 | -85 | 4.2 | TTGCAACCGTTTACGA |
| Lactobacillus plantarum WCFS1 | lp_2258 | -158 | 5.2 | TTGAAATCGCTTTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0414 | -120 | 4.1 | ATGCAAGCGGTTTACA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0419 | -125 | 4 | TTGCAAGCGTTTCATA |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0543 | -124 | 4.9 | TTGCAAACGCTTACAA |
| -102 | 4.2 | TTATAAGTGTTTTCAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1251 | -109 | 4.6 | ATGAATACGTTATCAA |
|
Position: -75
Score: 4.4 Sequence: CTGTAAACGTTTGCAA
Locus tag: LBA0431
|
||||
| LBA0431 | -75 | 4.4 | CTGTAAACGTTTGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccpA | ||||
| Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family | ||||
| Lactobacillus acidophilus NCFM | LBA0431 | -75 | 4.4 | CTGTAAACGTTTGCAA |
| Lactobacillus brevis ATCC 367 | LVIS_1203 | -107 | 4.7 | TCGAAAACGTTTTCAA |
| -49 | 4.1 | TTGAAAACGGATGAAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0809 | -94 | 4 | AGTAAAACGCTTGCAT |
| Lactobacillus helveticus DPC 4571 | lhv_0457 | -76 | 4.3 | ATGTAAACGTTTGCAC |
| Lactobacillus johnsonii NCC 533 | LJ0491 | -74 | 4 | TCGTAAACGGTTGCAA |
| Lactobacillus plantarum WCFS1 | lp_2256 | -121 | 5.2 | ATGAAAGCGATTTCAA |
| -51 | 4 | ATGAAAACGGATGAAA | ||
| Lactobacillus rhamnosus GG | LGG_00793 | -95 | 4 | AGTAAAACGCTTGCAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0544 | -114 | 4.4 | ATGAAAACACTTATAA |
| -92 | 4.9 | TTGTAAGCGTTTGCAA | ||
| Oenococcus oeni PSU-1 | OEOE_0684 | -59 | 4.6 | ATGTAATCGCTTGCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1250 | -69 | 4.6 | TTGATAACGTATTCAT |
|
Position: -42
Score: 4.5 Sequence: ATAAAAGCGGATTCAT
Locus tag: LBA0452
|
||||
| LBA0452 | -42 | 4.5 | ATAAAAGCGGATTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: manL | ||||
| Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA0452 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus fermentum IFO 3956 | LAF_0391 | -140 | 4.7 | TAGTAAGCGTTTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0480 | -42 | 4.5 | ATAAAAGCGGATTCAT |
| Lactobacillus johnsonii NCC 533 | LJ0503 | -106 | 4.4 | ATGCAAGCATTTTCAA |
| -68 | 4.1 | AAGCAAACGTATACAT | ||
| Lactobacillus plantarum WCFS1 | lp_0575 | 1 | 4 | TGGTAAGCATTATCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0449 | -136 | 4.2 | AGTAAAGCGTTTTAAA |
| -57 | 4.6 | TTGTTAGCGTTTTTAT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0086 | -109 | 4.3 | TAGAAATCGTTTACAC |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0654 | -131 | 4.3 | TAGTAAGTGTTTTCAA |
| -61 | 4.1 | ATGAAAAGGCTTTATT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1768 | -100 | 4.7 | ATGTAAACGGTAACAA |
| -75 | 5.4 | TTGAAAGCGTTTACAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1518 | -146 | 4.5 | TTGAAAGCGTTTTTTG |
|
Position: -161
Score: 4.3 Sequence: AAGCAAGCGCTTCCAT
Locus tag: LBA0461
|
||||
| LBA0461 | -161 | 4.3 | AAGCAAGCGCTTCCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Lactobacillus acidophilus NCFM | LBA0461 | -161 | 4.3 | AAGCAAGCGCTTCCAT |
| Lactobacillus brevis ATCC 367 | LVIS_0119 | -173 | 4.4 | CTGTATGCGCTTACAT |
| Lactobacillus fermentum IFO 3956 | LAF_0277 | -197 | 4.7 | TTGAAAACGCTTTCTC |
| Lactobacillus johnsonii NCC 533 | LJ1766 | -162 | 4.5 | ATGTAACCGATAACAT |
| Lactobacillus reuteri JCM 1112 | LAR_0310 | -132 | 4.8 | TTGTAAGCGAATTCAT |
| Lactobacillus sakei subsp. sakei 23K | LSA0379 | -74 | 4.5 | TTACAAACGGTTTCAA |
|
Position: -43
Score: 5.1 Sequence: ATGAAAGCGTTTTAAT
Locus tag: LBA0466
|
||||
| LBA0466 | -43 | 5.1 | ATGAAAGCGTTTTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pck | ||||
| Ortholog function: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) | ||||
| Lactobacillus johnsonii NCC 533 | LJ0149 | -38 | 5 | TTGAAACCGCTTTCTA |
| Lactobacillus plantarum WCFS1 | lp_3418 | -68 | 4.8 | AAGAAAACGCTTTCTT |
| Lactobacillus rhamnosus GG | LGG_01876 | -85 | 4.4 | GTGAAAGCCTTTTCAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0395 | -46 | 4.4 | ATGAAAGCGTATTATA |
|
Position: -61
Score: 4.1 Sequence: TTGGATGCGTTTTTTT
Locus tag: LBA0587
|
||||
| LBA0587 | -61 | 4.1 | TTGGATGCGTTTTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus acidophilus NCFM | LBA0587 | -61 | 4.1 | TTGGATGCGTTTTTTT |
| Lactobacillus plantarum WCFS1 | lp_3660 | -72 | 4.9 | ATTAAAACGTTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1699 | -65 | 4.9 | ATTAAAACGTTTTCAT |
|
Position: -111
Score: 4.4 Sequence: ATGTAAACTGTTACAT
Locus tag: LBA0639
|
||||
| LBA0639 | -111 | 4.4 | ATGTAAACTGTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ptsH | ||||
| Ortholog function: Phosphotransferase system, HPr-related protein | ||||
| Lactobacillus acidophilus NCFM | LBA0639 | -111 | 4.4 | ATGTAAACTGTTACAT |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_0512 | -108 | 4.7 | ATGAAAACATTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_0686 | -109 | 4.4 | ATGTAAGCTATTACAT |
| Lactobacillus johnsonii NCC 533 | LJ0816 | -109 | 4.6 | ATGTAAACATTTACAT |
| Lactobacillus plantarum WCFS1 | lp_1273 | -135 | 4 | ATGAAAGGGCTTGTAT |
| Lactobacillus reuteri JCM 1112 | LAR_1256 | -102 | 4 | TATTTAACGCTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0388 | -91 | 4.1 | TTGTTATCGTTTGCAT |
| -68 | 4.2 | ATGTAAACGTGTTCTT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1780 | -157 | 5.3 | ATGTAAACGTTTTCAT |
| -63 | 4.7 | TTGTAAGCGCTTTGAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_0609 | -127 | 4 | ATGTAAGGGCTTGCTT |
|
Position: -55
Score: 4.3 Sequence: AAGTAAGCGCTTTCCG
Locus tag: LBA0680
|
||||
| LBA0680 | -55 | 4.3 | AAGTAAGCGCTTTCCG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glgB | ||||
| Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) | ||||
| Lactobacillus acidophilus NCFM | LBA0680 | -55 | 4.3 | AAGTAAGCGCTTTCCG |
| Lactobacillus casei ATCC 334 | LSEI_2040 | -230 | 4.1 | TTGTAATCGCTGTTAA |
| -208 | 4.4 | CAGTAAGCGGTTACAA | ||
| Lactobacillus rhamnosus GG | LGG_02027 | -197 | 4 | CCGAAAGCGGTTACAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1294 | -88 | 4 | GTGAAAGCTATTTCTT |
|
Position: -163
Score: 4.8 Sequence: TTGACACCGCTTTCAA
Locus tag: LBA0724
|
||||
| LBA0724 | -163 | 4.8 | TTGACACCGCTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: licT | ||||
| Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family | ||||
| Lactobacillus acidophilus NCFM | LBA0724 | -196 | 4.3 | TTTAAAACATTTTCAT |
| -163 | 4.8 | TTGACACCGCTTTCAA | ||
| Lactobacillus johnsonii NCC 533 | LJ0623 | -141 | 4.7 | ATGTAAGCGCTATTAT |
| Lactobacillus plantarum WCFS1 | lp_3529 | -160 | 4.7 | TTGACACCGCTTACAA |
|
Position: -58
Score: 4.3 Sequence: AAGAAAAGGGTTTCAT
Locus tag: LBA0745
|
||||
| LBA0745 | -58 | 4.3 | AAGAAAAGGGTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pmi | ||||
| Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8) | ||||
| Lactobacillus acidophilus NCFM | LBA0745 | -58 | 4.3 | AAGAAAAGGGTTTCAT |
| Lactobacillus brevis ATCC 367 | LVIS_1656 | -86 | 4.8 | TAGAAAGCGCTTGCAA |
| Lactobacillus helveticus DPC 4571 | lhv_0789 | -58 | 4.3 | AAGAAAAGGGTTTCAT |
| Lactobacillus johnsonii NCC 533 | LJ0916 | -60 | 4.6 | TTGAAAGTGGTTTCAA |
| Lactobacillus sakei subsp. sakei 23K | LSA1146 | -99 | 4.1 | ACGAAATCGCTTTAAA |
| Oenococcus oeni PSU-1 | OEOE_0249 | -30 | 4.9 | ATGATAACGCTTACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1334 | -21 | 4.3 | ATGAAAGGGGTTTTAT |
|
Position: -44
Score: 4.9 Sequence: ATGCAAACGTTTTCAA
Locus tag: LBA0874
|
||||
| LBA0874 | -44 | 4.9 | ATGCAAACGTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglA | ||||
| Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0874 | -44 | 4.9 | ATGCAAACGTTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0182 | -132 | 4.8 | ATGAAACCGTTTGCAA |
| -35 | 4.3 | TCGAAAACGCTTACTT | ||
| Lactobacillus plantarum WCFS1 | lp_2777 | -68 | 4.7 | ATGAAAGCGGTTTATT |
| Oenococcus oeni PSU-1 | OEOE_0341 | -70 | 4.8 | ATGAAAGCGTTTTAAG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0106 | -51 | 4.5 | ATGAAAAGGCTTTCTA |
|
Position: -35
Score: 4.8 Sequence: ATGAAAGCGATTACAG
Locus tag: LBA0885
|
||||
| LBA0885 | -35 | 4.8 | ATGAAAGCGATTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bglB | ||||
| Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86) | ||||
| Lactobacillus acidophilus NCFM | LBA0885 | -35 | 4.8 | ATGAAAGCGATTACAG |
| Lactobacillus helveticus DPC 4571 | lhv_0941 | -34 | 4 | CTGAAAGCACTTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0194 | -28 | 4.7 | ATGTAAGCGATTGCAA |
| Lactobacillus plantarum WCFS1 | lp_3011 | -43 | 4.5 | AGGAAAGCGTTTTCCA |
| Oenococcus oeni PSU-1 | OEOE_1210 | -93 | 4.5 | ATGGTAGCGATTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1776 | -34 | 4.8 | ATGAAAGCGAATTCAA |
|
Position: -134
Score: 4.2 Sequence: ATGTAAGTGCTAACAT
Locus tag: LBA0956
|
||||
| LBA0956 | -134 | 4.2 | ATGTAAGTGCTAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfk | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Lactobacillus acidophilus NCFM | LBA0956 | -134 | 4.2 | ATGTAAGTGCTAACAT |
| Lactobacillus helveticus DPC 4571 | lhv_1049 | -136 | 4.2 | ATGTAAGTGCTAACAT |
| Lactobacillus johnsonii NCC 533 | LJ1079 | -132 | 4.5 | TTGAAAGCGAAAACAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1093 | -116 | 4 | AATAAAGCACTTACAT |
|
Position: -96
Score: 4.3 Sequence: TTGTGATCGCTTTCAA
Position: -29
Score: 4.8 Sequence: ATGAAAACGCTTTATA
Locus tag: LBA1012
|
||||
| LBA1012 | -96 | 4.3 | TTGTGATCGCTTTCAA | |
| -29 | 4.8 | ATGAAAACGCTTTATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treP | ||||
| Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) | ||||
| Lactobacillus acidophilus NCFM | LBA1012 | -96 | 4.3 | TTGTGATCGCTTTCAA |
| -29 | 4.8 | ATGAAAACGCTTTATA | ||
| Lactobacillus casei ATCC 334 | LSEI_0631 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0760 | -104 | 4.4 | AAGTAAGCTTTTTCAT |
| -36 | 4.5 | ATGAAAGCGGATACTT | ||
| Lactobacillus plantarum WCFS1 | lp_3240 | -118 | 4.8 | AAGAAAGCGCTTTTAT |
| Lactobacillus plantarum WCFS1 | lp_0264 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00603 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1200 | -105 | 4.4 | TTGTAAACGGTTCAAA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1512 | -96 | 4.5 | TTGTAAACAATTTCAT |
| -27 | 4.1 | AAGAAAAGGTTTTCAG | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0507 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0508 | -86 | 5.1 | TTGTAACCGTTTACAT |
| Oenococcus oeni PSU-1 | OEOE_1342 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Oenococcus oeni PSU-1 | OEOE_1341 | -96 | 4.5 | TTGAAAACGCTTTATG |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1804 | -199 | 4.6 | TTAGAAACGCTTACAT |
| -56 | 4.7 | TAGCAAGCGCTTACAA | ||
|
Position: -169
Score: 4.7 Sequence: TATAAAGCGTTTTCAT
Position: -102
Score: 4.5 Sequence: TTGAAAGCGATCACAA
Locus tag: LBA1013
|
||||
| LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT | |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: treR | ||||
| Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family | ||||
| Lactobacillus acidophilus NCFM | LBA1013 | -169 | 4.7 | TATAAAGCGTTTTCAT |
| -102 | 4.5 | TTGAAAGCGATCACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0629 | -90 | 4.2 | TTAAAAGCGTTTAAAC |
| -27 | 4.3 | GTGAAAGCGATTTCTG | ||
| Lactobacillus johnsonii NCC 533 | LJ0759 | 4 | 4.4 | AAGTATCCGCTTTCAT |
| Lactobacillus plantarum WCFS1 | lp_0262 | -29 | 4.7 | ATGAAAACGATAACAA |
| Lactobacillus rhamnosus GG | LGG_00601 | -27 | 4.3 | GTGAAAACGGTTACTG |
| Lactobacillus sakei subsp. sakei 23K | LSA1201 | -145 | 4.2 | GTAAAAGCGCTTTCTG |
| -82 | 4.4 | TTTGAACCGTTTACAA | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1513 | -130 | 4.2 | ATGAAATTGTTTACAA |
| Oenococcus oeni PSU-1 | OEOE_1339 | -122 | 4.1 | TTGAAAACGAAAACTT |
| -66 | 4.5 | TGAAAAACGTTTTCAA | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1805 | -177 | 4.7 | TTGTAAGCGCTTGCTA |
| -34 | 4.6 | ATGTAAGCGTTTCTAA | ||
|
Position: -61
Score: 4.4 Sequence: GTGTAAACACTTTCAT
Locus tag: LBA1368
|
||||
| LBA1368 | -61 | 4.4 | GTGTAAACACTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: xylR | ||||
| Ortholog function: Xylose repressor XylR, ROK family | ||||
| Lactobacillus brevis ATCC 367 | LVIS_0464 | -202 | 4.7 | ATGTCAACGCTTTCAT |
| -115 | 4.2 | GTGTAAGCGGTTGCAG | ||
| Lactobacillus brevis ATCC 367 | LVIS_2109 | -122 | 4 | GTGTTACCGTTTGCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0186 | -150 | 4.2 | TTGTAAGCGAATACAC |
| -129 | 4.4 | ATGTCAACGCTTTTAT | ||
| -107 | 4.7 | TTGAAAACGCTTTACA | ||
|
Position: -52
Score: 4.4 Sequence: ATGAAAGAGGTTACAA
Locus tag: LBA1401
|
||||
| LBA1401 | -52 | 4.4 | ATGAAAGAGGTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcaD | ||||
| Ortholog function: NADH peroxidase (EC 1.11.1.1) | ||||
| Lactobacillus acidophilus NCFM | LBA1401 | -52 | 4.4 | ATGAAAGAGGTTACAA |
| Lactobacillus plantarum WCFS1 | lp_2544 | -200 | 4.3 | TTGTAACCGTTTTAGT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0137 | -56 | 3.8 | GTGAAAACGTTCTATA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1619 | -81 | 4.7 | TTATAAGCGTTTTAAT |
| -66 | 4.1 | TTGTAAGCGGTTCACA | ||
|
Position: -35
Score: 4.7 Sequence: TTGTAAGCGATTGCAT
Locus tag: LBA1433
|
||||
| LBA1433 | -35 | 4.7 | TTGTAAGCGATTGCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dhaK | ||||
| Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK | ||||
| Lactobacillus acidophilus NCFM | LBA1433 | -35 | 4.7 | TTGTAAGCGATTGCAT |
| Lactobacillus plantarum WCFS1 | lp_0168 | -58 | 4.6 | TTGAAATCGGATTCAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1633 | -64 | 5 | TTGAAAGCGTTTATAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1662 | -63 | 4.8 | TTGTAATCGCTTTCTA |
|
Position: -53
Score: 5.1 Sequence: ATGAAAGCGCTTAAAA
Locus tag: LBA1442
|
||||
| LBA1442 | -53 | 5.1 | ATGAAAGCGCTTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: msmE | ||||
| Ortholog function: Multiple sugar ABC transporter, substrate-binding protein | ||||
| Lactobacillus acidophilus NCFM | LBA1442 | -53 | 5.1 | ATGAAAGCGCTTAAAA |
|
Position: -206
Score: 5 Sequence: TTTTAAGCGCTTTCAT
Locus tag: LBA1443
|
||||
| LBA1443 | -206 | 5 | TTTTAAGCGCTTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rafR | ||||
| Ortholog function: Raffinose utilization transcriptional regulator RafR, AraC family | ||||
| Lactobacillus acidophilus NCFM | LBA1443 | -206 | 5 | TTTTAAGCGCTTTCAT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0511 | -204 | 4.7 | TTGTATCCGTTTTCAT |
|
Position: -36
Score: 4.3 Sequence: CTGAAAACGATTACAG
Locus tag: LBA1459
|
||||
| LBA1459 | -36 | 4.3 | CTGAAAACGATTACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galK | ||||
| Ortholog function: Galactokinase (EC 2.7.1.6) | ||||
| Lactobacillus acidophilus NCFM | LBA1459 | -36 | 4.3 | CTGAAAACGATTACAG |
| Lactobacillus brevis ATCC 367 | LVIS_1904 | -98 | 4.7 | ATGAAAACGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_1792 | -99 | 4.1 | ATGTAAGCGCTCTATT |
| Lactobacillus helveticus DPC 4571 | lhv_1501 | -37 | 4.8 | TTGAAAACGATTACAG |
| Lactobacillus johnsonii NCC 533 | LJ0859 | -36 | 5.1 | ATGAAAACGATTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_1662 | -125 | 4.5 | GTGTAATCGTTTTCTT |
| -93 | 4.4 | TTGTAAGCGCTTATTG | ||
|
Position: -47
Score: 5 Sequence: ATAAAAGCGTTTTCAA
Locus tag: LBA1467
|
||||
| LBA1467 | -47 | 5 | ATAAAAGCGTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lacL | ||||
| Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23) | ||||
| Lactobacillus acidophilus NCFM | LBA1467 | -47 | 5 | ATAAAAGCGTTTTCAA |
| Lactobacillus brevis ATCC 367 | LVIS_2259 | -32 | 4.5 | GTGTAAGCGTTTTATA |
| Lactobacillus fermentum IFO 3956 | LAF_0247 | -48 | 5 | TTGAAACCGTTATCAT |
| Lactobacillus helveticus DPC 4571 | lhv_1549 | -46 | 4.4 | ATAAAAGCTCTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0855 | -45 | 4.4 | ATAAAAGCGTCTTCAA |
| Lactobacillus plantarum WCFS1 | lp_3483 | -43 | 5 | TTGTAAGCGTTTTTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0276 | -53 | 4.4 | ATGAAAGCGCTATACT |
| Lactobacillus sakei subsp. sakei 23K | LSA1711 | -37 | 4.9 | ATGAAACCGTTTTAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0376 | -32 | 4.5 | ATGTAAGCATTTTCTT |
| Pediococcus pentosaceus ATCC 25745 | PEPE_0205 | -41 | 4.8 | TTGTAAGCGTTTTATA |
|
Position: -138
Score: 4.7 Sequence: TTGCAATCGCTTACAT
Locus tag: LBA1479
|
||||
| LBA1479 | -138 | 4.7 | TTGCAATCGCTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glcT | ||||
| Ortholog function: Beta-glucoside bgl operon antiterminator, BglG family | ||||
| Lactobacillus acidophilus NCFM | LBA1479 | -138 | 4.7 | TTGCAATCGCTTACAT |
| Lactobacillus johnsonii NCC 533 | LJ1262 | -143 | 4.6 | TTGCAATCGTTTACAT |
|
Position: -101
Score: 4.7 Sequence: TTGAAAGCGATTACAC
Locus tag: LBA1485
|
||||
| LBA1485 | -101 | 4.7 | TTGAAAGCGATTACAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsK | ||||
| Ortholog function: Ribokinase (EC 2.7.1.15) | ||||
| Lactobacillus acidophilus NCFM | LBA1485 | -101 | 4.7 | TTGAAAGCGATTACAC |
| Lactobacillus fermentum IFO 3956 | LAF_1738 | -158 | 4.3 | TAGCAAACGCTTGCAT |
| -103 | 4.5 | TTGCAACCGCTTTCCT | ||
| Lactobacillus fermentum IFO 3956 | LAF_1689 | -91 | 4.3 | TTGTAACCGGTTTACA |
| Lactobacillus fermentum IFO 3956 | LAF_1738 | -158 | 4.3 | TAGCAAACGCTTGCAT |
| -103 | 4.5 | TTGCAACCGCTTTCCT | ||
| Lactobacillus reuteri JCM 1112 | LAR_0399 | -135 | 4.4 | TGAAAAGCGATTTCAA |
| -76 | 4.5 | TTGTAATCACTTTCAA | ||
| Lactobacillus reuteri JCM 1112 | LAR_0399 | -135 | 4.4 | TGAAAAGCGATTTCAA |
| -76 | 4.5 | TTGTAATCACTTTCAA | ||
|
Position: -66
Score: 4.7 Sequence: TTGTAAACGCTTTATA
Locus tag: LBA1632
|
||||
| LBA1632 | -66 | 4.7 | TTGTAAACGCTTTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gabD | ||||
| Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) | ||||
| Lactobacillus acidophilus NCFM | LBA1632 | -66 | 4.7 | TTGTAAACGCTTTATA |
| Lactobacillus brevis ATCC 367 | LVIS_0323 | -150 | 4.9 | TTGAAAACGGTTAAAT |
| Lactobacillus casei ATCC 334 | LSEI_2278 | -18 | 4.1 | AAGGGAGCGTTTTCAA |
| Lactobacillus fermentum IFO 3956 | LAF_0045 | -62 | 4.3 | GAAAAAGCGGTTACAA |
| Lactobacillus johnsonii NCC 533 | LJ0671 | -44 | 4.6 | AAGAAAGCGCTTTATA |
| Lactobacillus plantarum WCFS1 | lp_3092 | -45 | 4 | GATTAACCGTTTACAA |
| Lactobacillus reuteri JCM 1112 | LAR_0033 | -132 | 4.1 | ATAAAAGGGCTTTTAT |
| -30 | 4.6 | ATGTAAGCGTTTATTT | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1298 | -37 | 4.3 | ATGTAAGCGTACTCAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1821 | -55 | 4.8 | ATGAAAGCGTATTCTT |
|
Position: -190
Score: 4.7 Sequence: ATAAAAGCGTTTTAAA
Locus tag: LBA1653
|
||||
| LBA1653 | -190 | 4.7 | ATAAAAGCGTTTTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pnuC | ||||
| Ortholog function: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter | ||||
| Lactobacillus acidophilus NCFM | LBA1653 | -190 | 4.7 | ATAAAAGCGTTTTAAA |
| Lactobacillus brevis ATCC 367 | LVIS_0311 | -188 | 4.6 | TTGAAAGCGCTTTATG |
| Lactobacillus johnsonii NCC 533 | LJ0643 | -173 | 4.6 | AAGAAAGCGCTATCTA |
| Lactobacillus rhamnosus GG | LGG_01221 | -158 | 4.1 | ATGAAAAGGGTTTCCA |
|
Position: -100
Score: 4.5 Sequence: GTGAAAGCGAATACAT
Locus tag: LBA1689
|
||||
| LBA1689 | -100 | 4.5 | GTGAAAGCGAATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: simA | ||||
| Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122) | ||||
| Lactobacillus acidophilus NCFM | LBA1689 | -100 | 4.5 | GTGAAAGCGAATACAT |
| Lactobacillus casei ATCC 334 | LSEI_0369 | -105 | 4.9 | TTGAAACCGCTTGCAT |
| Lactobacillus johnsonii NCC 533 | LJ0635 | -127 | 5.2 | TTGAAAACGCTTTCTT |
|
Position: -131
Score: 5.1 Sequence: ATGAAAGCGTTATCAT
Locus tag: LBA1708
|
||||
| LBA1708 | -131 | 5.1 | ATGAAAGCGTTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: licT | ||||
| Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family | ||||
| Lactobacillus acidophilus NCFM | LBA1708 | -131 | 5.1 | ATGAAAGCGTTATCAT |
| Lactobacillus johnsonii NCC 533 | LJ0542 | -126 | 4.6 | AAGAAAGCGATATCAT |
| Lactobacillus plantarum WCFS1 | lp_0904 | -147 | 4.5 | GAGAAAACGCTATCAT |
|
Position: -37
Score: 4.2 Sequence: GAGAAAGCGAATACAA
Locus tag: LBA1779
|
||||
| LBA1779 | -37 | 4.2 | GAGAAAGCGAATACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fruR | ||||
| Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family | ||||
| Lactobacillus acidophilus NCFM | LBA1779 | -37 | 4.2 | GAGAAAGCGAATACAA |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_1889 | -164 | 4 | GAGAAAGCCTTTACAA |
| Lactobacillus helveticus DPC 4571 | lhv_1846 | 12 | 4.3 | GAGAAAGCGGATACAA |
| Lactobacillus johnsonii NCC 533 | LJ0570 | -40 | 4.1 | CTGAAAGCGTTTATCA |
| Lactobacillus plantarum WCFS1 | lp_2095 | -6 | 4.3 | TTGAAAGTGCTTACAG |
| Lactobacillus sakei subsp. sakei 23K | LSA1048 | -130 | 4 | ATGAAAACCTTTACAC |
| -40 | 4.3 | TTGTAAACGATGACAT | ||
| Pediococcus pentosaceus ATCC 25745 | PEPE_1166 | -6 | 4.3 | ATGAAAGTGCTTACAG |
|
Position: -40
Score: 4.8 Sequence: TTGAAAGCGAATACAT
Locus tag: LBA1812
|
||||
| LBA1812 | -40 | 4.8 | TTGAAAGCGAATACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: agl3 | ||||
| Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10) | ||||
| Lactobacillus acidophilus NCFM | LBA1812 | -40 | 4.8 | TTGAAAGCGAATACAT |
| Lactobacillus johnsonii NCC 533 | LJ0569 | -35 | 4.8 | TTGAAAGCGAATACAA |
| Lactobacillus plantarum WCFS1 | lp_3534 | -104 | 4.6 | GTGTAAACGTTTACTT |
| -72 | 4.7 | TTGTAAACGTTTACGT | ||
| Lactobacillus reuteri JCM 1112 | LAR_0972 | -66 | 4.5 | ACGAAAACGTTTACAT |
|
Position: -74
Score: 4.4 Sequence: TGTAAACCGCTTTCAA
Position: -48
Score: 4.6 Sequence: ATGAAAGCGTAAACAA
Locus tag: LBA1870
|
||||
| LBA1870 | -74 | 4.4 | TGTAAACCGCTTTCAA | |
| -48 | 4.6 | ATGAAAGCGTAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mapA | ||||
| Ortholog function: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64) | ||||
| Lactobacillus acidophilus NCFM | LBA1870 | -74 | 4.4 | TGTAAACCGCTTTCAA |
| -48 | 4.6 | ATGAAAGCGTAAACAA | ||
| Lactobacillus casei ATCC 334 | LSEI_0982 | -127 | 4.5 | ATGATAGCGGTAACAT |
| Lactobacillus helveticus DPC 4571 | lhv_2000 | -76 | 4.4 | TGTAAACCGCTTTCAA |
| Lactobacillus johnsonii NCC 533 | LJ0213 | -70 | 4.5 | TGTTAAGCGCTTTCAA |
|
Position: -76
Score: 4.5 Sequence: TTGATACCGCTAACAT
Position: -49
Score: 5 Sequence: TTGAAAACGGTTTCTT
Locus tag: LBA1872
|
||||
| LBA1872 | -76 | 4.5 | TTGATACCGCTAACAT | |
| -49 | 5 | TTGAAAACGGTTTCTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: agl | ||||
| Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10) | ||||
| Lactobacillus acidophilus NCFM | LBA1872 | -49 | 5 | TTGAAAACGGTTTCTT |
| Lactobacillus casei ATCC 334 | LSEI_0980 | -80 | 4.4 | TTGATAACGGTAACAA |
| Lactobacillus helveticus DPC 4571 | lhv_2002 | -34 | 4.3 | TTGAAAACGGTTTCCC |
| Lactobacillus johnsonii NCC 533 | LJ0211 | -53 | 5 | TTGTAAGCGCTTATAA |
|
Position: -72
Score: 4.4 Sequence: ATGAAAGCGCTATACT
Locus tag: LBA1873
|
||||
| LBA1873 | -72 | 4.4 | ATGAAAGCGCTATACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackB | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Lactobacillus acidophilus NCFM | LBA1873 | -72 | 4.4 | ATGAAAGCGCTATACT |
| Lactobacillus helveticus DPC 4571 | lhv_2003 | -178 | 4.5 | ATGAAAGCGCTATATT |
| Lactobacillus johnsonii NCC 533 | LJ0485 | -68 | 4.4 | ATGAAAGCGCTATACT |
|
Position: -110
Score: 4.4 Sequence: GAAAAAGCGGTTTCAT
Position: -78
Score: 4 Sequence: AAGATAGCGTTTTGAA
Locus tag: LBA1974
|
||||
| LBA1974 | -110 | 4.4 | GAAAAAGCGGTTTCAT | |
| -78 | 4 | AAGATAGCGTTTTGAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: spxB | ||||
| Ortholog function: Pyruvate oxidase (EC 1.2.3.3) | ||||
| Lactobacillus acidophilus NCFM | LBA1974 | -110 | 4.4 | GAAAAAGCGGTTTCAT |
| -78 | 4 | AAGATAGCGTTTTGAA | ||
| Lactobacillus brevis ATCC 367 | LVIS_0313 | -152 | 4.3 | TTGAAAGCGTGAACAA |
| Lactobacillus casei ATCC 334 | LSEI_1784 | -149 | 4 | GTTTAAGCGTTTTATA |
| -92 | 4.4 | ATGAAAGGGCTTGCAT | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | LBUL_2034 | -76 | 4 | TTGATAGCACTTGCAA |
| Lactobacillus johnsonii NCC 533 | LJ1853 | -79 | 4.1 | CAGCAACCGCTTTCAA |
| Lactobacillus plantarum WCFS1 | lp_0849 | -390 | 4.3 | ATGTAAGCGTCATCAT |
| -86 | 4.9 | ATAAAAGCGTTTACAT | ||
| Lactobacillus rhamnosus GG | LGG_01836 | -136 | 4.6 | ATTAAAGCGCTTTCCT |
| -89 | 4.1 | GTGAAAGGGTTTGCAT | ||
| Lactobacillus sakei subsp. sakei 23K | LSA1830 | -71 | 4.1 | TTTGTAACGCTTACAA |