Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Lactobacillus acidophilus NCFM

Reference regulog properties
Source regulog: CcpA - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus acidophilus NCFM
Orthologous TF(s) LBA0431
Regulated genes 38
Built upon 561 sites [see more]
Predicted regulatory interactions in Lactobacillus acidophilus NCFM
Locus tag Position Score Sequence
Position: -54
Score: 4.6
Sequence: TTGCAACCGATTTCAT
Locus tag: LBA0225
LBA0225 -54 4.6 TTGCAACCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglA
Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0225 -54 4.6 TTGCAACCGATTTCAT
Lactobacillus plantarum WCFS1 lp_2778 -68 4.7 ATGAAAGCGGTTTATT
Oenococcus oeni PSU-1 OEOE_0340 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0283 -58 4.5 TCGTAAGCGGTTTCAT
Position: -220
Score: 4.9
Sequence: ATGTAAACGCTTTTAT
Position: -188
Score: 4.5
Sequence: ATGATAACGTATTCAA
Position: -31
Score: 4.6
Sequence: AAGATAACGCTTACAT
Locus tag: LBA0400
LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrB
Ortholog function: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Lactobacillus acidophilus NCFM LBA0400 -220 4.9 ATGTAAACGCTTTTAT
-188 4.5 ATGATAACGTATTCAA
-31 4.6 AAGATAACGCTTACAT
Lactobacillus johnsonii NCC 533 LJ0518 -214 4.7 GTGTAAGCGTTTTAAA
-184 4.3 ATGATAGCGTATTCTA
-37 4.6 AAGAATGCGTTTACAT
Lactobacillus plantarum WCFS1 lp_0187 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Lactobacillus sakei subsp. sakei 23K LSA1793 -188 4.5 TTGTAAACGCTTTTCA
-163 4.3 ATACAACCGTTTACAT
-59 4.1 TATCAAACGTTTACAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0065 -121 4.1 ATTTAACCGCTTTTTT
-33 4.5 AAGAATACGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_0519 -213 4.3 ATGCAAGCGCTTTACA
-59 4.6 GTGTAAGCGGTTTTAT
Position: -219
Score: 4.7
Sequence: ATGTAAGCGTTATCTT
Position: -62
Score: 4.6
Sequence: TTGAATACGTTATCAT
Position: -30
Score: 4.9
Sequence: ATAAAAGCGTTTACAT
Locus tag: LBA0401
LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-62 4.6 TTGAATACGTTATCAT
-30 4.9 ATAAAAGCGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrA
Ortholog function: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0401 -219 4.7 ATGTAAGCGTTATCTT
-30 4.9 ATAAAAGCGTTTACAT
Lactobacillus fermentum IFO 3956 LAF_1578 -126 4.4 TTGGCAGCGATTTCAA
-57 4.5 AGAAAAGCGCTTACAA
Lactobacillus johnsonii NCC 533 LJ0519 -214 4.6 ATGTAAACGCATTCTT
-37 4.4 TTTAAAACGCTTACAC
Lactobacillus plantarum WCFS1 lp_0185 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1792 -183 4.2 ATGTAAACGTTTGATA
-54 4.5 TGAAAAGCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0066 -52 4.2 CATTAAGCGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0518 -212 4.3 ATAAAACCGCTTACAC
-157 4 ATGTCAGCGTTTCAAA
-58 4.1 TGTAAAGCGCTTGCAT
Position: -85
Score: 4.6
Sequence: TTGCAAACGTTTACAG
Locus tag: LBA0430
LBA0430 -85 4.6 TTGCAAACGTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepQ
Ortholog function: Xaa-Pro dipeptidase (EC 3.4.13.9)
Lactobacillus acidophilus NCFM LBA0430 -85 4.6 TTGCAAACGTTTACAG
Lactobacillus brevis ATCC 367 LVIS_1204 -103 4.9 TTGAAAACGTTTTCGA
Lactobacillus casei ATCC 334 LSEI_0808 -229 4.2 ATGCAAGCGTTTTACT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1474 -89 4 GTGCAATCGCTTACAG
Lactobacillus helveticus DPC 4571 lhv_0456 -86 4.6 GTGCAAACGTTTACAT
Lactobacillus johnsonii NCC 533 LJ0490 -85 4.2 TTGCAACCGTTTACGA
Lactobacillus plantarum WCFS1 lp_2258 -158 5.2 TTGAAATCGCTTTCAT
Lactobacillus sakei subsp. sakei 23K LSA0414 -120 4.1 ATGCAAGCGGTTTACA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0419 -125 4 TTGCAAGCGTTTCATA
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0543 -124 4.9 TTGCAAACGCTTACAA
-102 4.2 TTATAAGTGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1251 -109 4.6 ATGAATACGTTATCAA
Position: -75
Score: 4.4
Sequence: CTGTAAACGTTTGCAA
Locus tag: LBA0431
LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccpA
Ortholog function: Carbon catabolism global transcriptional regulator CcpA, LacI family
Lactobacillus acidophilus NCFM LBA0431 -75 4.4 CTGTAAACGTTTGCAA
Lactobacillus brevis ATCC 367 LVIS_1203 -107 4.7 TCGAAAACGTTTTCAA
-49 4.1 TTGAAAACGGATGAAA
Lactobacillus casei ATCC 334 LSEI_0809 -94 4 AGTAAAACGCTTGCAT
Lactobacillus helveticus DPC 4571 lhv_0457 -76 4.3 ATGTAAACGTTTGCAC
Lactobacillus johnsonii NCC 533 LJ0491 -74 4 TCGTAAACGGTTGCAA
Lactobacillus plantarum WCFS1 lp_2256 -121 5.2 ATGAAAGCGATTTCAA
-51 4 ATGAAAACGGATGAAA
Lactobacillus rhamnosus GG LGG_00793 -95 4 AGTAAAACGCTTGCAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0544 -114 4.4 ATGAAAACACTTATAA
-92 4.9 TTGTAAGCGTTTGCAA
Oenococcus oeni PSU-1 OEOE_0684 -59 4.6 ATGTAATCGCTTGCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1250 -69 4.6 TTGATAACGTATTCAT
Position: -42
Score: 4.5
Sequence: ATAAAAGCGGATTCAT
Locus tag: LBA0452
LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: manL
Ortholog function: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA0452 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus fermentum IFO 3956 LAF_0391 -140 4.7 TAGTAAGCGTTTACAG
Lactobacillus helveticus DPC 4571 lhv_0480 -42 4.5 ATAAAAGCGGATTCAT
Lactobacillus johnsonii NCC 533 LJ0503 -106 4.4 ATGCAAGCATTTTCAA
-68 4.1 AAGCAAACGTATACAT
Lactobacillus plantarum WCFS1 lp_0575 1 4 TGGTAAGCATTATCAT
Lactobacillus sakei subsp. sakei 23K LSA0449 -136 4.2 AGTAAAGCGTTTTAAA
-57 4.6 TTGTTAGCGTTTTTAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0086 -109 4.3 TAGAAATCGTTTACAC
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0654 -131 4.3 TAGTAAGTGTTTTCAA
-61 4.1 ATGAAAAGGCTTTATT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1768 -100 4.7 ATGTAAACGGTAACAA
-75 5.4 TTGAAAGCGTTTACAA
Pediococcus pentosaceus ATCC 25745 PEPE_1518 -146 4.5 TTGAAAGCGTTTTTTG
Position: -161
Score: 4.3
Sequence: AAGCAAGCGCTTCCAT
Locus tag: LBA0461
LBA0461 -161 4.3 AAGCAAGCGCTTCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Lactobacillus acidophilus NCFM LBA0461 -161 4.3 AAGCAAGCGCTTCCAT
Lactobacillus brevis ATCC 367 LVIS_0119 -173 4.4 CTGTATGCGCTTACAT
Lactobacillus fermentum IFO 3956 LAF_0277 -197 4.7 TTGAAAACGCTTTCTC
Lactobacillus johnsonii NCC 533 LJ1766 -162 4.5 ATGTAACCGATAACAT
Lactobacillus reuteri JCM 1112 LAR_0310 -132 4.8 TTGTAAGCGAATTCAT
Lactobacillus sakei subsp. sakei 23K LSA0379 -74 4.5 TTACAAACGGTTTCAA
Position: -43
Score: 5.1
Sequence: ATGAAAGCGTTTTAAT
Locus tag: LBA0466
LBA0466 -43 5.1 ATGAAAGCGTTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49)
Lactobacillus johnsonii NCC 533 LJ0149 -38 5 TTGAAACCGCTTTCTA
Lactobacillus plantarum WCFS1 lp_3418 -68 4.8 AAGAAAACGCTTTCTT
Lactobacillus rhamnosus GG LGG_01876 -85 4.4 GTGAAAGCCTTTTCAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0395 -46 4.4 ATGAAAGCGTATTATA
Position: -61
Score: 4.1
Sequence: TTGGATGCGTTTTTTT
Locus tag: LBA0587
LBA0587 -61 4.1 TTGGATGCGTTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM LBA0587 -61 4.1 TTGGATGCGTTTTTTT
Lactobacillus plantarum WCFS1 lp_3660 -72 4.9 ATTAAAACGTTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1699 -65 4.9 ATTAAAACGTTTTCAT
Position: -111
Score: 4.4
Sequence: ATGTAAACTGTTACAT
Locus tag: LBA0639
LBA0639 -111 4.4 ATGTAAACTGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: Phosphotransferase system, HPr-related protein
Lactobacillus acidophilus NCFM LBA0639 -111 4.4 ATGTAAACTGTTACAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_0512 -108 4.7 ATGAAAACATTTACAA
Lactobacillus helveticus DPC 4571 lhv_0686 -109 4.4 ATGTAAGCTATTACAT
Lactobacillus johnsonii NCC 533 LJ0816 -109 4.6 ATGTAAACATTTACAT
Lactobacillus plantarum WCFS1 lp_1273 -135 4 ATGAAAGGGCTTGTAT
Lactobacillus reuteri JCM 1112 LAR_1256 -102 4 TATTTAACGCTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0388 -91 4.1 TTGTTATCGTTTGCAT
-68 4.2 ATGTAAACGTGTTCTT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1780 -157 5.3 ATGTAAACGTTTTCAT
-63 4.7 TTGTAAGCGCTTTGAT
Pediococcus pentosaceus ATCC 25745 PEPE_0609 -127 4 ATGTAAGGGCTTGCTT
Position: -55
Score: 4.3
Sequence: AAGTAAGCGCTTTCCG
Locus tag: LBA0680
LBA0680 -55 4.3 AAGTAAGCGCTTTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgB
Ortholog function: 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18)
Lactobacillus acidophilus NCFM LBA0680 -55 4.3 AAGTAAGCGCTTTCCG
Lactobacillus casei ATCC 334 LSEI_2040 -230 4.1 TTGTAATCGCTGTTAA
-208 4.4 CAGTAAGCGGTTACAA
Lactobacillus rhamnosus GG LGG_02027 -197 4 CCGAAAGCGGTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1294 -88 4 GTGAAAGCTATTTCTT
Position: -163
Score: 4.8
Sequence: TTGACACCGCTTTCAA
Locus tag: LBA0724
LBA0724 -163 4.8 TTGACACCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: licT
Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family
Lactobacillus acidophilus NCFM LBA0724 -196 4.3 TTTAAAACATTTTCAT
-163 4.8 TTGACACCGCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0623 -141 4.7 ATGTAAGCGCTATTAT
Lactobacillus plantarum WCFS1 lp_3529 -160 4.7 TTGACACCGCTTACAA
Position: -58
Score: 4.3
Sequence: AAGAAAAGGGTTTCAT
Locus tag: LBA0745
LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pmi
Ortholog function: Mannose-6-phosphate isomerase (EC 5.3.1.8)
Lactobacillus acidophilus NCFM LBA0745 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus brevis ATCC 367 LVIS_1656 -86 4.8 TAGAAAGCGCTTGCAA
Lactobacillus helveticus DPC 4571 lhv_0789 -58 4.3 AAGAAAAGGGTTTCAT
Lactobacillus johnsonii NCC 533 LJ0916 -60 4.6 TTGAAAGTGGTTTCAA
Lactobacillus sakei subsp. sakei 23K LSA1146 -99 4.1 ACGAAATCGCTTTAAA
Oenococcus oeni PSU-1 OEOE_0249 -30 4.9 ATGATAACGCTTACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1334 -21 4.3 ATGAAAGGGGTTTTAT
Position: -44
Score: 4.9
Sequence: ATGCAAACGTTTTCAA
Locus tag: LBA0874
LBA0874 -44 4.9 ATGCAAACGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglA
Ortholog function: 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0874 -44 4.9 ATGCAAACGTTTTCAA
Lactobacillus johnsonii NCC 533 LJ0182 -132 4.8 ATGAAACCGTTTGCAA
-35 4.3 TCGAAAACGCTTACTT
Lactobacillus plantarum WCFS1 lp_2777 -68 4.7 ATGAAAGCGGTTTATT
Oenococcus oeni PSU-1 OEOE_0341 -70 4.8 ATGAAAGCGTTTTAAG
Pediococcus pentosaceus ATCC 25745 PEPE_0106 -51 4.5 ATGAAAAGGCTTTCTA
Position: -35
Score: 4.8
Sequence: ATGAAAGCGATTACAG
Locus tag: LBA0885
LBA0885 -35 4.8 ATGAAAGCGATTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: bglB
Ortholog function: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
Lactobacillus acidophilus NCFM LBA0885 -35 4.8 ATGAAAGCGATTACAG
Lactobacillus helveticus DPC 4571 lhv_0941 -34 4 CTGAAAGCACTTACAG
Lactobacillus johnsonii NCC 533 LJ0194 -28 4.7 ATGTAAGCGATTGCAA
Lactobacillus plantarum WCFS1 lp_3011 -43 4.5 AGGAAAGCGTTTTCCA
Oenococcus oeni PSU-1 OEOE_1210 -93 4.5 ATGGTAGCGATTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_1776 -34 4.8 ATGAAAGCGAATTCAA
Position: -134
Score: 4.2
Sequence: ATGTAAGTGCTAACAT
Locus tag: LBA0956
LBA0956 -134 4.2 ATGTAAGTGCTAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfk
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Lactobacillus acidophilus NCFM LBA0956 -134 4.2 ATGTAAGTGCTAACAT
Lactobacillus helveticus DPC 4571 lhv_1049 -136 4.2 ATGTAAGTGCTAACAT
Lactobacillus johnsonii NCC 533 LJ1079 -132 4.5 TTGAAAGCGAAAACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1093 -116 4 AATAAAGCACTTACAT
Position: -96
Score: 4.3
Sequence: TTGTGATCGCTTTCAA
Position: -29
Score: 4.8
Sequence: ATGAAAACGCTTTATA
Locus tag: LBA1012
LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Lactobacillus acidophilus NCFM LBA1012 -96 4.3 TTGTGATCGCTTTCAA
-29 4.8 ATGAAAACGCTTTATA
Lactobacillus casei ATCC 334 LSEI_0631 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0760 -104 4.4 AAGTAAGCTTTTTCAT
-36 4.5 ATGAAAGCGGATACTT
Lactobacillus plantarum WCFS1 lp_3240 -118 4.8 AAGAAAGCGCTTTTAT
Lactobacillus plantarum WCFS1 lp_0264 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00603 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1200 -105 4.4 TTGTAAACGGTTCAAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1512 -96 4.5 TTGTAAACAATTTCAT
-27 4.1 AAGAAAAGGTTTTCAG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0507 -86 5.1 TTGTAACCGTTTACAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0508 -86 5.1 TTGTAACCGTTTACAT
Oenococcus oeni PSU-1 OEOE_1342 -96 4.5 TTGAAAACGCTTTATG
Oenococcus oeni PSU-1 OEOE_1341 -96 4.5 TTGAAAACGCTTTATG
Pediococcus pentosaceus ATCC 25745 PEPE_1804 -199 4.6 TTAGAAACGCTTACAT
-56 4.7 TAGCAAGCGCTTACAA
Position: -169
Score: 4.7
Sequence: TATAAAGCGTTTTCAT
Position: -102
Score: 4.5
Sequence: TTGAAAGCGATCACAA
Locus tag: LBA1013
LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -169 4.7 TATAAAGCGTTTTCAT
-102 4.5 TTGAAAGCGATCACAA
Lactobacillus casei ATCC 334 LSEI_0629 -90 4.2 TTAAAAGCGTTTAAAC
-27 4.3 GTGAAAGCGATTTCTG
Lactobacillus johnsonii NCC 533 LJ0759 4 4.4 AAGTATCCGCTTTCAT
Lactobacillus plantarum WCFS1 lp_0262 -29 4.7 ATGAAAACGATAACAA
Lactobacillus rhamnosus GG LGG_00601 -27 4.3 GTGAAAACGGTTACTG
Lactobacillus sakei subsp. sakei 23K LSA1201 -145 4.2 GTAAAAGCGCTTTCTG
-82 4.4 TTTGAACCGTTTACAA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -130 4.2 ATGAAATTGTTTACAA
Oenococcus oeni PSU-1 OEOE_1339 -122 4.1 TTGAAAACGAAAACTT
-66 4.5 TGAAAAACGTTTTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -177 4.7 TTGTAAGCGCTTGCTA
-34 4.6 ATGTAAGCGTTTCTAA
Position: -61
Score: 4.4
Sequence: GTGTAAACACTTTCAT
Locus tag: LBA1368
LBA1368 -61 4.4 GTGTAAACACTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose repressor XylR, ROK family
Lactobacillus brevis ATCC 367 LVIS_0464 -202 4.7 ATGTCAACGCTTTCAT
-115 4.2 GTGTAAGCGGTTGCAG
Lactobacillus brevis ATCC 367 LVIS_2109 -122 4 GTGTTACCGTTTGCAA
Pediococcus pentosaceus ATCC 25745 PEPE_0186 -150 4.2 TTGTAAGCGAATACAC
-129 4.4 ATGTCAACGCTTTTAT
-107 4.7 TTGAAAACGCTTTACA
Position: -52
Score: 4.4
Sequence: ATGAAAGAGGTTACAA
Locus tag: LBA1401
LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcaD
Ortholog function: NADH peroxidase (EC 1.11.1.1)
Lactobacillus acidophilus NCFM LBA1401 -52 4.4 ATGAAAGAGGTTACAA
Lactobacillus plantarum WCFS1 lp_2544 -200 4.3 TTGTAACCGTTTTAGT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0137 -56 3.8 GTGAAAACGTTCTATA
Pediococcus pentosaceus ATCC 25745 PEPE_1619 -81 4.7 TTATAAGCGTTTTAAT
-66 4.1 TTGTAAGCGGTTCACA
Position: -35
Score: 4.7
Sequence: TTGTAAGCGATTGCAT
Locus tag: LBA1433
LBA1433 -35 4.7 TTGTAAGCGATTGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dhaK
Ortholog function: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Lactobacillus acidophilus NCFM LBA1433 -35 4.7 TTGTAAGCGATTGCAT
Lactobacillus plantarum WCFS1 lp_0168 -58 4.6 TTGAAATCGGATTCAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1633 -64 5 TTGAAAGCGTTTATAT
Pediococcus pentosaceus ATCC 25745 PEPE_1662 -63 4.8 TTGTAATCGCTTTCTA
Position: -53
Score: 5.1
Sequence: ATGAAAGCGCTTAAAA
Locus tag: LBA1442
LBA1442 -53 5.1 ATGAAAGCGCTTAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmE
Ortholog function: Multiple sugar ABC transporter, substrate-binding protein
Lactobacillus acidophilus NCFM LBA1442 -53 5.1 ATGAAAGCGCTTAAAA
Position: -206
Score: 5
Sequence: TTTTAAGCGCTTTCAT
Locus tag: LBA1443
LBA1443 -206 5 TTTTAAGCGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rafR
Ortholog function: Raffinose utilization transcriptional regulator RafR, AraC family
Lactobacillus acidophilus NCFM LBA1443 -206 5 TTTTAAGCGCTTTCAT
Pediococcus pentosaceus ATCC 25745 PEPE_0511 -204 4.7 TTGTATCCGTTTTCAT
Position: -36
Score: 4.3
Sequence: CTGAAAACGATTACAG
Locus tag: LBA1459
LBA1459 -36 4.3 CTGAAAACGATTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: galK
Ortholog function: Galactokinase (EC 2.7.1.6)
Lactobacillus acidophilus NCFM LBA1459 -36 4.3 CTGAAAACGATTACAG
Lactobacillus brevis ATCC 367 LVIS_1904 -98 4.7 ATGAAAACGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_1792 -99 4.1 ATGTAAGCGCTCTATT
Lactobacillus helveticus DPC 4571 lhv_1501 -37 4.8 TTGAAAACGATTACAG
Lactobacillus johnsonii NCC 533 LJ0859 -36 5.1 ATGAAAACGATTACAA
Lactobacillus reuteri JCM 1112 LAR_1662 -125 4.5 GTGTAATCGTTTTCTT
-93 4.4 TTGTAAGCGCTTATTG
Position: -47
Score: 5
Sequence: ATAAAAGCGTTTTCAA
Locus tag: LBA1467
LBA1467 -47 5 ATAAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lacL
Ortholog function: Beta-galactosidase large subunit (EC 3.2.1.23)
Lactobacillus acidophilus NCFM LBA1467 -47 5 ATAAAAGCGTTTTCAA
Lactobacillus brevis ATCC 367 LVIS_2259 -32 4.5 GTGTAAGCGTTTTATA
Lactobacillus fermentum IFO 3956 LAF_0247 -48 5 TTGAAACCGTTATCAT
Lactobacillus helveticus DPC 4571 lhv_1549 -46 4.4 ATAAAAGCTCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0855 -45 4.4 ATAAAAGCGTCTTCAA
Lactobacillus plantarum WCFS1 lp_3483 -43 5 TTGTAAGCGTTTTTAT
Lactobacillus reuteri JCM 1112 LAR_0276 -53 4.4 ATGAAAGCGCTATACT
Lactobacillus sakei subsp. sakei 23K LSA1711 -37 4.9 ATGAAACCGTTTTAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0376 -32 4.5 ATGTAAGCATTTTCTT
Pediococcus pentosaceus ATCC 25745 PEPE_0205 -41 4.8 TTGTAAGCGTTTTATA
Position: -138
Score: 4.7
Sequence: TTGCAATCGCTTACAT
Locus tag: LBA1479
LBA1479 -138 4.7 TTGCAATCGCTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glcT
Ortholog function: Beta-glucoside bgl operon antiterminator, BglG family
Lactobacillus acidophilus NCFM LBA1479 -138 4.7 TTGCAATCGCTTACAT
Lactobacillus johnsonii NCC 533 LJ1262 -143 4.6 TTGCAATCGTTTACAT
Position: -101
Score: 4.7
Sequence: TTGAAAGCGATTACAC
Locus tag: LBA1485
LBA1485 -101 4.7 TTGAAAGCGATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsK
Ortholog function: Ribokinase (EC 2.7.1.15)
Lactobacillus acidophilus NCFM LBA1485 -101 4.7 TTGAAAGCGATTACAC
Lactobacillus fermentum IFO 3956 LAF_1738 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus fermentum IFO 3956 LAF_1689 -91 4.3 TTGTAACCGGTTTACA
Lactobacillus fermentum IFO 3956 LAF_1738 -158 4.3 TAGCAAACGCTTGCAT
-103 4.5 TTGCAACCGCTTTCCT
Lactobacillus reuteri JCM 1112 LAR_0399 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Lactobacillus reuteri JCM 1112 LAR_0399 -135 4.4 TGAAAAGCGATTTCAA
-76 4.5 TTGTAATCACTTTCAA
Position: -66
Score: 4.7
Sequence: TTGTAAACGCTTTATA
Locus tag: LBA1632
LBA1632 -66 4.7 TTGTAAACGCTTTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gabD
Ortholog function: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Lactobacillus acidophilus NCFM LBA1632 -66 4.7 TTGTAAACGCTTTATA
Lactobacillus brevis ATCC 367 LVIS_0323 -150 4.9 TTGAAAACGGTTAAAT
Lactobacillus casei ATCC 334 LSEI_2278 -18 4.1 AAGGGAGCGTTTTCAA
Lactobacillus fermentum IFO 3956 LAF_0045 -62 4.3 GAAAAAGCGGTTACAA
Lactobacillus johnsonii NCC 533 LJ0671 -44 4.6 AAGAAAGCGCTTTATA
Lactobacillus plantarum WCFS1 lp_3092 -45 4 GATTAACCGTTTACAA
Lactobacillus reuteri JCM 1112 LAR_0033 -132 4.1 ATAAAAGGGCTTTTAT
-30 4.6 ATGTAAGCGTTTATTT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1298 -37 4.3 ATGTAAGCGTACTCAA
Pediococcus pentosaceus ATCC 25745 PEPE_1821 -55 4.8 ATGAAAGCGTATTCTT
Position: -190
Score: 4.7
Sequence: ATAAAAGCGTTTTAAA
Locus tag: LBA1653
LBA1653 -190 4.7 ATAAAAGCGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pnuC
Ortholog function: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter
Lactobacillus acidophilus NCFM LBA1653 -190 4.7 ATAAAAGCGTTTTAAA
Lactobacillus brevis ATCC 367 LVIS_0311 -188 4.6 TTGAAAGCGCTTTATG
Lactobacillus johnsonii NCC 533 LJ0643 -173 4.6 AAGAAAGCGCTATCTA
Lactobacillus rhamnosus GG LGG_01221 -158 4.1 ATGAAAAGGGTTTCCA
Position: -100
Score: 4.5
Sequence: GTGAAAGCGAATACAT
Locus tag: LBA1689
LBA1689 -100 4.5 GTGAAAGCGAATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: simA
Ortholog function: Maltose-6'-phosphate glucosidase (EC 3.2.1.122)
Lactobacillus acidophilus NCFM LBA1689 -100 4.5 GTGAAAGCGAATACAT
Lactobacillus casei ATCC 334 LSEI_0369 -105 4.9 TTGAAACCGCTTGCAT
Lactobacillus johnsonii NCC 533 LJ0635 -127 5.2 TTGAAAACGCTTTCTT
Position: -131
Score: 5.1
Sequence: ATGAAAGCGTTATCAT
Locus tag: LBA1708
LBA1708 -131 5.1 ATGAAAGCGTTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: licT
Ortholog function: Beta-glucoside bgl operon transcriptional antiterminator, BglG family
Lactobacillus acidophilus NCFM LBA1708 -131 5.1 ATGAAAGCGTTATCAT
Lactobacillus johnsonii NCC 533 LJ0542 -126 4.6 AAGAAAGCGATATCAT
Lactobacillus plantarum WCFS1 lp_0904 -147 4.5 GAGAAAACGCTATCAT
Position: -37
Score: 4.2
Sequence: GAGAAAGCGAATACAA
Locus tag: LBA1779
LBA1779 -37 4.2 GAGAAAGCGAATACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Fructose utilization transcriptional regulator FruR, DeoR family
Lactobacillus acidophilus NCFM LBA1779 -37 4.2 GAGAAAGCGAATACAA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_1889 -164 4 GAGAAAGCCTTTACAA
Lactobacillus helveticus DPC 4571 lhv_1846 12 4.3 GAGAAAGCGGATACAA
Lactobacillus johnsonii NCC 533 LJ0570 -40 4.1 CTGAAAGCGTTTATCA
Lactobacillus plantarum WCFS1 lp_2095 -6 4.3 TTGAAAGTGCTTACAG
Lactobacillus sakei subsp. sakei 23K LSA1048 -130 4 ATGAAAACCTTTACAC
-40 4.3 TTGTAAACGATGACAT
Pediococcus pentosaceus ATCC 25745 PEPE_1166 -6 4.3 ATGAAAGTGCTTACAG
Position: -40
Score: 4.8
Sequence: TTGAAAGCGAATACAT
Locus tag: LBA1812
LBA1812 -40 4.8 TTGAAAGCGAATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: agl3
Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10)
Lactobacillus acidophilus NCFM LBA1812 -40 4.8 TTGAAAGCGAATACAT
Lactobacillus johnsonii NCC 533 LJ0569 -35 4.8 TTGAAAGCGAATACAA
Lactobacillus plantarum WCFS1 lp_3534 -104 4.6 GTGTAAACGTTTACTT
-72 4.7 TTGTAAACGTTTACGT
Lactobacillus reuteri JCM 1112 LAR_0972 -66 4.5 ACGAAAACGTTTACAT
Position: -74
Score: 4.4
Sequence: TGTAAACCGCTTTCAA
Position: -48
Score: 4.6
Sequence: ATGAAAGCGTAAACAA
Locus tag: LBA1870
LBA1870 -74 4.4 TGTAAACCGCTTTCAA
-48 4.6 ATGAAAGCGTAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mapA
Ortholog function: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
Lactobacillus acidophilus NCFM LBA1870 -74 4.4 TGTAAACCGCTTTCAA
-48 4.6 ATGAAAGCGTAAACAA
Lactobacillus casei ATCC 334 LSEI_0982 -127 4.5 ATGATAGCGGTAACAT
Lactobacillus helveticus DPC 4571 lhv_2000 -76 4.4 TGTAAACCGCTTTCAA
Lactobacillus johnsonii NCC 533 LJ0213 -70 4.5 TGTTAAGCGCTTTCAA
Position: -76
Score: 4.5
Sequence: TTGATACCGCTAACAT
Position: -49
Score: 5
Sequence: TTGAAAACGGTTTCTT
Locus tag: LBA1872
LBA1872 -76 4.5 TTGATACCGCTAACAT
-49 5 TTGAAAACGGTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: agl
Ortholog function: Oligo-1,6-glucosidase (EC 3.2.1.10)
Lactobacillus acidophilus NCFM LBA1872 -49 5 TTGAAAACGGTTTCTT
Lactobacillus casei ATCC 334 LSEI_0980 -80 4.4 TTGATAACGGTAACAA
Lactobacillus helveticus DPC 4571 lhv_2002 -34 4.3 TTGAAAACGGTTTCCC
Lactobacillus johnsonii NCC 533 LJ0211 -53 5 TTGTAAGCGCTTATAA
Position: -72
Score: 4.4
Sequence: ATGAAAGCGCTATACT
Locus tag: LBA1873
LBA1873 -72 4.4 ATGAAAGCGCTATACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackB
Ortholog function: Acetate kinase (EC 2.7.2.1)
Lactobacillus acidophilus NCFM LBA1873 -72 4.4 ATGAAAGCGCTATACT
Lactobacillus helveticus DPC 4571 lhv_2003 -178 4.5 ATGAAAGCGCTATATT
Lactobacillus johnsonii NCC 533 LJ0485 -68 4.4 ATGAAAGCGCTATACT
Position: -110
Score: 4.4
Sequence: GAAAAAGCGGTTTCAT
Position: -78
Score: 4
Sequence: AAGATAGCGTTTTGAA
Locus tag: LBA1974
LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: spxB
Ortholog function: Pyruvate oxidase (EC 1.2.3.3)
Lactobacillus acidophilus NCFM LBA1974 -110 4.4 GAAAAAGCGGTTTCAT
-78 4 AAGATAGCGTTTTGAA
Lactobacillus brevis ATCC 367 LVIS_0313 -152 4.3 TTGAAAGCGTGAACAA
Lactobacillus casei ATCC 334 LSEI_1784 -149 4 GTTTAAGCGTTTTATA
-92 4.4 ATGAAAGGGCTTGCAT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 LBUL_2034 -76 4 TTGATAGCACTTGCAA
Lactobacillus johnsonii NCC 533 LJ1853 -79 4.1 CAGCAACCGCTTTCAA
Lactobacillus plantarum WCFS1 lp_0849 -390 4.3 ATGTAAGCGTCATCAT
-86 4.9 ATAAAAGCGTTTACAT
Lactobacillus rhamnosus GG LGG_01836 -136 4.6 ATTAAAGCGCTTTCCT
-89 4.1 GTGAAAGGGTTTGCAT
Lactobacillus sakei subsp. sakei 23K LSA1830 -71 4.1 TTTGTAACGCTTACAA
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