Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of ArgR regulog to Lactobacillus salivarius subsp. salivarius UCC118

Reference regulog properties
Source regulog: ArgR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: ArgR
Regulation mode: repressor, activator
Biological process: Arginine degradation; Arginine biosynthesis
Effector: Arginine
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus salivarius subsp. salivarius UCC118
Orthologous TF(s) LSL_0233, LSL_0538
Regulated genes 5
Built upon 27 sites [see more]
Predicted regulatory interactions in Lactobacillus salivarius subsp. salivarius UCC118
Locus tag Position Score Sequence
Position: -16
Score: 2.9
Sequence: AGGAGATAATTGATCTAT
Locus tag: LSL_0305
LSL_0305 -16 2.9 AGGAGATAATTGATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argH
Ortholog function: Argininosuccinate lyase (EC 4.3.2.1)
Lactobacillus casei ATCC 334 LSEI_2812 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1624 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0776 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0703 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02818 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0305 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1458 -73 3.8 ATTGCATATTTAATCAAA
Position: -350
Score: 3
Sequence: TGTGAATACAATCACTGC
Position: -323
Score: 2.9
Sequence: CGAAAGTAAAAATAAGAA
Position: -321
Score: 3.9
Sequence: AAAGTAAAAATAAGAATT
Position: -317
Score: 3.1
Sequence: TAAAAATAAGAATTATTC
Position: -314
Score: 4.5
Sequence: AAATAAGAATTATTCAAT
Position: -277
Score: 3
Sequence: CTAATCTCATAATAAAAT
Position: -248
Score: 4.2
Sequence: ATTGAATACCTATAATAT
Position: -237
Score: 3.1
Sequence: ATAATATACTCATGTAAG
Position: -223
Score: 3.7
Sequence: TAAGATTAAAAAGTCAAC
Position: -203
Score: 3.3
Sequence: TAAAATTAATTATTTTCA
Position: -166
Score: 2.9
Sequence: CATCATTCACTATACACT
Position: -150
Score: 3
Sequence: CTTATATGTATATTTAAT
Position: -146
Score: 3.3
Sequence: TATGTATATTTAATACAT
Position: -139
Score: 3
Sequence: ATTTAATACATAAAATTG
Position: -135
Score: 3.1
Sequence: AATACATAAAATTGATTA
Position: -126
Score: 3.1
Sequence: AATTGATTAAAAATGAAT
Position: -125
Score: 4.2
Sequence: ATTGATTAAAAATGAATA
Position: -123
Score: 2.9
Sequence: TGATTAAAAATGAATATT
Position: -119
Score: 3
Sequence: TAAAAATGAATATTTTTG
Position: -115
Score: 3.6
Sequence: AATGAATATTTTTGATTA
Position: -105
Score: 3.8
Sequence: TTTGATTATTTTTACACT
Position: -103
Score: 2.9
Sequence: TGATTATTTTTACACTTT
Position: -88
Score: 3
Sequence: TTTTTATTGATTTTTATT
Position: -84
Score: 3.3
Sequence: TATTGATTTTTATTAAAA
Position: -78
Score: 3.3
Sequence: TTTTTATTAAAAATAAAT
Position: -77
Score: 3.5
Sequence: TTTTATTAAAAATAAATG
Position: -73
Score: 3
Sequence: ATTAAAAATAAATGTATA
Position: -71
Score: 4
Sequence: TAAAAATAAATGTATAGT
Position: -51
Score: 3.4
Sequence: AGTCAATGAATAGATTAT
Position: -47
Score: 3.5
Sequence: AATGAATAGATTATGAAT
Position: -40
Score: 3.7
Sequence: AGATTATGAATATTTTAA
Position: -36
Score: 3.1
Sequence: TATGAATATTTTAATTTT
Position: -31
Score: 3.1
Sequence: ATATTTTAATTTTATGAA
Position: -15
Score: 3
Sequence: AAAAGAGGAATTTACATG
Locus tag: LSL_0306
LSL_0306 -350 3 TGTGAATACAATCACTGC
-323 2.9 CGAAAGTAAAAATAAGAA
-321 3.9 AAAGTAAAAATAAGAATT
-317 3.1 TAAAAATAAGAATTATTC
-314 4.5 AAATAAGAATTATTCAAT
-277 3 CTAATCTCATAATAAAAT
-248 4.2 ATTGAATACCTATAATAT
-237 3.1 ATAATATACTCATGTAAG
-223 3.7 TAAGATTAAAAAGTCAAC
-203 3.3 TAAAATTAATTATTTTCA
-166 2.9 CATCATTCACTATACACT
-150 3 CTTATATGTATATTTAAT
-146 3.3 TATGTATATTTAATACAT
-139 3 ATTTAATACATAAAATTG
-135 3.1 AATACATAAAATTGATTA
-126 3.1 AATTGATTAAAAATGAAT
-125 4.2 ATTGATTAAAAATGAATA
-123 2.9 TGATTAAAAATGAATATT
-119 3 TAAAAATGAATATTTTTG
-115 3.6 AATGAATATTTTTGATTA
-105 3.8 TTTGATTATTTTTACACT
-103 2.9 TGATTATTTTTACACTTT
-88 3 TTTTTATTGATTTTTATT
-84 3.3 TATTGATTTTTATTAAAA
-78 3.3 TTTTTATTAAAAATAAAT
-77 3.5 TTTTATTAAAAATAAATG
-73 3 ATTAAAAATAAATGTATA
-71 4 TAAAAATAAATGTATAGT
-51 3.4 AGTCAATGAATAGATTAT
-47 3.5 AATGAATAGATTATGAAT
-40 3.7 AGATTATGAATATTTTAA
-36 3.1 TATGAATATTTTAATTTT
-31 3.1 ATATTTTAATTTTATGAA
-15 3 AAAAGAGGAATTTACATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: argG
Ortholog function: Argininosuccinate synthase (EC 6.3.4.5)
Lactobacillus casei ATCC 334 LSEI_2811 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus fermentum IFO 3956 LAF_1625 -136 2.3 CTTGCATTTTTATTTGAT
Lactobacillus plantarum WCFS1 lp_0775 -139 4.1 TCTGCATAAAAATTCTAT
Lactobacillus reuteri JCM 1112 LAR_0702 -164 4.7 ATTAAATAATTATTCTAT
Lactobacillus rhamnosus GG LGG_02817 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus salivarius subsp. salivarius UCC118 LSL_0306 -47 3.5 AATGAATAGATTATGAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_1459 -73 3.8 ATTGCATATTTAATCAAA
Position: 13
Score: 3.3
Sequence: AGATGATTGAAGTACAAA
Locus tag: LSL_1540
LSL_1540 13 3.3 AGATGATTGAAGTACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: artM
Ortholog function: Arginine ABC transporter, ATP-binding protein
Lactobacillus brevis ATCC 367 LVIS_1201 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_1345 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus fermentum IFO 3956 LAF_0624 -63 3.6 CTTGCATAATAATTCGTT
Lactobacillus plantarum WCFS1 lp_2110 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0697 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_01357 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1056 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1540 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0629 -59 3 GATGCATATAAATTATAA
Pediococcus pentosaceus ATCC 25745 PEPE_1136 -94 5.2 AATGTATAAAAATTCATA
Position: -105
Score: 4.1
Sequence: AATATACAAAATTACAAA
Position: -82
Score: 4.3
Sequence: CTTGCATAAATAAACAAT
Position: -62
Score: 3.9
Sequence: AAAGTATACTAATCATAT
Position: 13
Score: 3.7
Sequence: AGAAGATATTAATGCTTT
Locus tag: LSL_1541
LSL_1541 -105 4.1 AATATACAAAATTACAAA
-82 4.3 CTTGCATAAATAAACAAT
-62 3.9 AAAGTATACTAATCATAT
13 3.7 AGAAGATATTAATGCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: artPQ
Ortholog function: Arginine ABC transporter, substrate-binding and permease protein
Lactobacillus brevis ATCC 367 LVIS_1200 -161 4.6 AATGTATAAATTTTTATA
-96 4.9 AGTGTATAAAAATAGATA
Lactobacillus casei ATCC 334 LSEI_2810 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus casei ATCC 334 LSEI_1344 -56 4.2 ATTGCATAAAAATCAATT
Lactobacillus plantarum WCFS1 lp_2111 -17 3.8 CTTGCATAAATAATCATA
Lactobacillus reuteri JCM 1112 LAR_0698 -253 4.7 ATTGCATAAATAAACATT
Lactobacillus rhamnosus GG LGG_02816 -46 4.4 AATGAGTATATATTCAAT
Lactobacillus rhamnosus GG LGG_01356 -56 4.3 ATTGCATAAAAATTGAAT
Lactobacillus sakei subsp. sakei 23K LSA1057 -55 4.5 ATTGCATAAATATTTATA
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1541 -162 3.5 GTTACATAAATATATTTT
-82 4.3 CTTGCATAAATAAACAAT
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 LEUM_0655 -62 5.3 ATTGTATAAAAATTCAAA
Pediococcus pentosaceus ATCC 25745 PEPE_1137 -94 5.2 AATGTATAAAAATTCATA
© 2009-2020 RegPrecise