Propagation of ArgR regulog to Lactobacillus salivarius subsp. salivarius UCC118
| Source regulog: | ArgR - Lactobacillaceae |
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Lactobacillus salivarius subsp. salivarius UCC118 |
| Orthologous TF(s) | LSL_0233, LSL_0538 |
| Regulated genes | 5 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -16
Score: 2.9 Sequence: AGGAGATAATTGATCTAT
Locus tag: LSL_0305
|
||||
| LSL_0305 | -16 | 2.9 | AGGAGATAATTGATCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argH | ||||
| Ortholog function: Argininosuccinate lyase (EC 4.3.2.1) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2812 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1624 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0776 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0703 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02818 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0305 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1458 | -73 | 3.8 | ATTGCATATTTAATCAAA |
|
Position: -350
Score: 3 Sequence: TGTGAATACAATCACTGC
Position: -323
Score: 2.9 Sequence: CGAAAGTAAAAATAAGAA
Position: -321
Score: 3.9 Sequence: AAAGTAAAAATAAGAATT
Position: -317
Score: 3.1 Sequence: TAAAAATAAGAATTATTC
Position: -314
Score: 4.5 Sequence: AAATAAGAATTATTCAAT
Position: -277
Score: 3 Sequence: CTAATCTCATAATAAAAT
Position: -248
Score: 4.2 Sequence: ATTGAATACCTATAATAT
Position: -237
Score: 3.1 Sequence: ATAATATACTCATGTAAG
Position: -223
Score: 3.7 Sequence: TAAGATTAAAAAGTCAAC
Position: -203
Score: 3.3 Sequence: TAAAATTAATTATTTTCA
Position: -166
Score: 2.9 Sequence: CATCATTCACTATACACT
Position: -150
Score: 3 Sequence: CTTATATGTATATTTAAT
Position: -146
Score: 3.3 Sequence: TATGTATATTTAATACAT
Position: -139
Score: 3 Sequence: ATTTAATACATAAAATTG
Position: -135
Score: 3.1 Sequence: AATACATAAAATTGATTA
Position: -126
Score: 3.1 Sequence: AATTGATTAAAAATGAAT
Position: -125
Score: 4.2 Sequence: ATTGATTAAAAATGAATA
Position: -123
Score: 2.9 Sequence: TGATTAAAAATGAATATT
Position: -119
Score: 3 Sequence: TAAAAATGAATATTTTTG
Position: -115
Score: 3.6 Sequence: AATGAATATTTTTGATTA
Position: -105
Score: 3.8 Sequence: TTTGATTATTTTTACACT
Position: -103
Score: 2.9 Sequence: TGATTATTTTTACACTTT
Position: -88
Score: 3 Sequence: TTTTTATTGATTTTTATT
Position: -84
Score: 3.3 Sequence: TATTGATTTTTATTAAAA
Position: -78
Score: 3.3 Sequence: TTTTTATTAAAAATAAAT
Position: -77
Score: 3.5 Sequence: TTTTATTAAAAATAAATG
Position: -73
Score: 3 Sequence: ATTAAAAATAAATGTATA
Position: -71
Score: 4 Sequence: TAAAAATAAATGTATAGT
Position: -51
Score: 3.4 Sequence: AGTCAATGAATAGATTAT
Position: -47
Score: 3.5 Sequence: AATGAATAGATTATGAAT
Position: -40
Score: 3.7 Sequence: AGATTATGAATATTTTAA
Position: -36
Score: 3.1 Sequence: TATGAATATTTTAATTTT
Position: -31
Score: 3.1 Sequence: ATATTTTAATTTTATGAA
Position: -15
Score: 3 Sequence: AAAAGAGGAATTTACATG
Locus tag: LSL_0306
|
||||
| LSL_0306 | -350 | 3 | TGTGAATACAATCACTGC | |
| -323 | 2.9 | CGAAAGTAAAAATAAGAA | ||
| -321 | 3.9 | AAAGTAAAAATAAGAATT | ||
| -317 | 3.1 | TAAAAATAAGAATTATTC | ||
| -314 | 4.5 | AAATAAGAATTATTCAAT | ||
| -277 | 3 | CTAATCTCATAATAAAAT | ||
| -248 | 4.2 | ATTGAATACCTATAATAT | ||
| -237 | 3.1 | ATAATATACTCATGTAAG | ||
| -223 | 3.7 | TAAGATTAAAAAGTCAAC | ||
| -203 | 3.3 | TAAAATTAATTATTTTCA | ||
| -166 | 2.9 | CATCATTCACTATACACT | ||
| -150 | 3 | CTTATATGTATATTTAAT | ||
| -146 | 3.3 | TATGTATATTTAATACAT | ||
| -139 | 3 | ATTTAATACATAAAATTG | ||
| -135 | 3.1 | AATACATAAAATTGATTA | ||
| -126 | 3.1 | AATTGATTAAAAATGAAT | ||
| -125 | 4.2 | ATTGATTAAAAATGAATA | ||
| -123 | 2.9 | TGATTAAAAATGAATATT | ||
| -119 | 3 | TAAAAATGAATATTTTTG | ||
| -115 | 3.6 | AATGAATATTTTTGATTA | ||
| -105 | 3.8 | TTTGATTATTTTTACACT | ||
| -103 | 2.9 | TGATTATTTTTACACTTT | ||
| -88 | 3 | TTTTTATTGATTTTTATT | ||
| -84 | 3.3 | TATTGATTTTTATTAAAA | ||
| -78 | 3.3 | TTTTTATTAAAAATAAAT | ||
| -77 | 3.5 | TTTTATTAAAAATAAATG | ||
| -73 | 3 | ATTAAAAATAAATGTATA | ||
| -71 | 4 | TAAAAATAAATGTATAGT | ||
| -51 | 3.4 | AGTCAATGAATAGATTAT | ||
| -47 | 3.5 | AATGAATAGATTATGAAT | ||
| -40 | 3.7 | AGATTATGAATATTTTAA | ||
| -36 | 3.1 | TATGAATATTTTAATTTT | ||
| -31 | 3.1 | ATATTTTAATTTTATGAA | ||
| -15 | 3 | AAAAGAGGAATTTACATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argG | ||||
| Ortholog function: Argininosuccinate synthase (EC 6.3.4.5) | ||||
| Lactobacillus casei ATCC 334 | LSEI_2811 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus fermentum IFO 3956 | LAF_1625 | -136 | 2.3 | CTTGCATTTTTATTTGAT |
| Lactobacillus plantarum WCFS1 | lp_0775 | -139 | 4.1 | TCTGCATAAAAATTCTAT |
| Lactobacillus reuteri JCM 1112 | LAR_0702 | -164 | 4.7 | ATTAAATAATTATTCTAT |
| Lactobacillus rhamnosus GG | LGG_02817 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_0306 | -47 | 3.5 | AATGAATAGATTATGAAT |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_1459 | -73 | 3.8 | ATTGCATATTTAATCAAA |
|
Position: 13
Score: 3.3 Sequence: AGATGATTGAAGTACAAA
Locus tag: LSL_1540
|
||||
| LSL_1540 | 13 | 3.3 | AGATGATTGAAGTACAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artM | ||||
| Ortholog function: Arginine ABC transporter, ATP-binding protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1201 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_1345 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus fermentum IFO 3956 | LAF_0624 | -63 | 3.6 | CTTGCATAATAATTCGTT |
| Lactobacillus plantarum WCFS1 | lp_2110 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0697 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_01357 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1056 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1540 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0629 | -59 | 3 | GATGCATATAAATTATAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1136 | -94 | 5.2 | AATGTATAAAAATTCATA |
|
Position: -105
Score: 4.1 Sequence: AATATACAAAATTACAAA
Position: -82
Score: 4.3 Sequence: CTTGCATAAATAAACAAT
Position: -62
Score: 3.9 Sequence: AAAGTATACTAATCATAT
Position: 13
Score: 3.7 Sequence: AGAAGATATTAATGCTTT
Locus tag: LSL_1541
|
||||
| LSL_1541 | -105 | 4.1 | AATATACAAAATTACAAA | |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| -62 | 3.9 | AAAGTATACTAATCATAT | ||
| 13 | 3.7 | AGAAGATATTAATGCTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: artPQ | ||||
| Ortholog function: Arginine ABC transporter, substrate-binding and permease protein | ||||
| Lactobacillus brevis ATCC 367 | LVIS_1200 | -161 | 4.6 | AATGTATAAATTTTTATA |
| -96 | 4.9 | AGTGTATAAAAATAGATA | ||
| Lactobacillus casei ATCC 334 | LSEI_2810 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus casei ATCC 334 | LSEI_1344 | -56 | 4.2 | ATTGCATAAAAATCAATT |
| Lactobacillus plantarum WCFS1 | lp_2111 | -17 | 3.8 | CTTGCATAAATAATCATA |
| Lactobacillus reuteri JCM 1112 | LAR_0698 | -253 | 4.7 | ATTGCATAAATAAACATT |
| Lactobacillus rhamnosus GG | LGG_02816 | -46 | 4.4 | AATGAGTATATATTCAAT |
| Lactobacillus rhamnosus GG | LGG_01356 | -56 | 4.3 | ATTGCATAAAAATTGAAT |
| Lactobacillus sakei subsp. sakei 23K | LSA1057 | -55 | 4.5 | ATTGCATAAATATTTATA |
| Lactobacillus salivarius subsp. salivarius UCC118 | LSL_1541 | -162 | 3.5 | GTTACATAAATATATTTT |
| -82 | 4.3 | CTTGCATAAATAAACAAT | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | LEUM_0655 | -62 | 5.3 | ATTGTATAAAAATTCAAA |
| Pediococcus pentosaceus ATCC 25745 | PEPE_1137 | -94 | 5.2 | AATGTATAAAAATTCATA |