Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of TreR regulog to Lactobacillus casei ATCC 334

Reference regulog properties
Source regulog: TreR - Lactobacillaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Firmicutes
Propagated regulon:
Target genome Lactobacillus casei ATCC 334
Orthologous TF(s) LSEI_0629
Regulated genes 1
Built upon 21 sites [see more]
Predicted regulatory interactions in Lactobacillus casei ATCC 334
Locus tag Position Score Sequence
Position: -61
Score: 5.2
Sequence: ATACCTGTACGTACAGGTAA
Locus tag: LSEI_0629
LSEI_0629 -61 5.2 ATACCTGTACGTACAGGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treR
Ortholog function: Trehalose utilization transcriptional regulator TreR, GntR family
Lactobacillus acidophilus NCFM LBA1013 -134 6.6 AAACTTGTATATACAAGTTG
-56 5.2 TTACTTGTCTATACATTTAT
Lactobacillus casei ATCC 334 LSEI_0629 -61 5.2 ATACCTGTACGTACAGGTAA
Lactobacillus johnsonii NCC 533 LJ0759 39 5.9 ATACTTGTCTGTACAAGTTG
Lactobacillus plantarum WCFS1 lp_0262 -59 5.6 CAACTTGTCTAAACAAGTCT
Lactobacillus rhamnosus GG LGG_00601 -61 5.6 ATACCTGTACGTACAAGTAG
Lactobacillus sakei subsp. sakei 23K LSA1201 -113 6.1 CAACATGTATAGACAAGTTG
Lactobacillus salivarius subsp. salivarius UCC118 LSL_1513 -162 6.3 TCACTTGTATATACAAGTTG
Pediococcus pentosaceus ATCC 25745 PEPE_1805 -142 6.2 AAACTTGTATATACAAGATG
-66 5.7 TACCTTGTATATACTAGTTA
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