Collection of regulogs in Vibrionales taxonomic group

General statistics
Genomes	10
TF regulogs	70
TF regulons	444
TF binding sites	3014
RNA regulogs	17
RNA regulons	140
RNA sites	202

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
	TF		RNA		Total
Genomes	Regulons	Sites	Regulons	Sites	Regulons	Sites
Photobacterium profundum SS9	50	310	14	22	64	332
Vibrio angustum S14	43	239	13	19	56	258
Vibrio cholerae O1 biovar eltor str. N16961	41	274	15	22	56	296
Vibrio fischeri ES114	37	277	13	19	50	296
Vibrio harveyi ATCC BAA-1116	46	324	14	19	60	343
Vibrio parahaemolyticus RIMD 2210633	51	370	15	21	66	391
Vibrio salmonicida LFI1238	36	235	13	19	49	254
Vibrio shilonii AK1	50	348	14	19	64	367
Vibrio splendidus LGP32	38	283	15	21	53	304
Vibrio vulnificus CMCP6	52	354	14	21	66	375

Genomic distribution of regulons
Family	Type	Regulator											Function
ArgR	TF	ArgR	7 ArgR Vibrio cholerae O1 biovar eltor str. N16961	9 ArgR Vibrio vulnificus CMCP6	7 ArgR Vibrio harveyi ATCC BAA-1116	8 ArgR Vibrio parahaemolyticus RIMD 2210633	8 ArgR Vibrio shilonii AK1	8 ArgR Vibrio splendidus LGP32	5 ArgR Vibrio fischeri ES114	6 ArgR Vibrio salmonicida LFI1238	3 ArgR Vibrio angustum S14	2 ArgR Photobacterium profundum SS9	Arginine biosynthesis; Arginine degradation
BirA	TF	BirA	2 BirA Vibrio cholerae O1 biovar eltor str. N16961	2 BirA Vibrio vulnificus CMCP6	2 BirA Vibrio harveyi ATCC BAA-1116	2 BirA Vibrio parahaemolyticus RIMD 2210633	2 BirA Vibrio shilonii AK1	2 BirA Vibrio splendidus LGP32	2 BirA Vibrio fischeri ES114	2 BirA Vibrio salmonicida LFI1238	2 BirA Vibrio angustum S14	2 BirA Photobacterium profundum SS9	Biotin biosynthesis
DeoR	TF	AgaR		1 AgaR Vibrio vulnificus CMCP6					2 AgaR Vibrio fischeri ES114		1 AgaR Vibrio angustum S14	3 AgaR Photobacterium profundum SS9	N-acetylgalactosamine utilization
FUR	TF	Fur	32 Fur Vibrio cholerae O1 biovar eltor str. N16961	37 Fur Vibrio vulnificus CMCP6	45 Fur Vibrio harveyi ATCC BAA-1116	40 Fur Vibrio parahaemolyticus RIMD 2210633	37 Fur Vibrio shilonii AK1	42 Fur Vibrio splendidus LGP32	24 Fur Vibrio fischeri ES114	21 Fur Vibrio salmonicida LFI1238	28 Fur Vibrio angustum S14	28 Fur Photobacterium profundum SS9	Iron homeostasis
	TF	Zur	6 Zur Vibrio cholerae O1 biovar eltor str. N16961	7 Zur Vibrio vulnificus CMCP6	5 Zur Vibrio harveyi ATCC BAA-1116	7 Zur Vibrio parahaemolyticus RIMD 2210633	8 Zur Vibrio shilonii AK1	6 Zur Vibrio splendidus LGP32	6 Zur Vibrio fischeri ES114	5 Zur Vibrio salmonicida LFI1238	4 Zur Vibrio angustum S14	4 Zur Photobacterium profundum SS9	Zinc homeostasis
Fis	TF	NorR	3 NorR Vibrio cholerae O1 biovar eltor str. N16961	2 NorR Vibrio vulnificus CMCP6			4 NorR Vibrio shilonii AK1	5 NorR Vibrio splendidus LGP32	2 NorR Vibrio fischeri ES114	2 NorR Vibrio salmonicida LFI1238			Nitrosative stress response
	TF	NorR2		2 NorR2 Vibrio vulnificus CMCP6	2 NorR2 Vibrio harveyi ATCC BAA-1116	2 NorR2 Vibrio parahaemolyticus RIMD 2210633			2 NorR2 Vibrio fischeri ES114		2 NorR2 Vibrio angustum S14	2 NorR2 Photobacterium profundum SS9	Nitrosative stress response
	TF	NtrC	3 NtrC Vibrio cholerae O1 biovar eltor str. N16961	3 NtrC Vibrio vulnificus CMCP6	3 NtrC Vibrio harveyi ATCC BAA-1116	4 NtrC Vibrio parahaemolyticus RIMD 2210633	3 NtrC Vibrio shilonii AK1	4 NtrC Vibrio splendidus LGP32	3 NtrC Vibrio fischeri ES114		3 NtrC Vibrio angustum S14	3 NtrC Photobacterium profundum SS9	Nitrogen assimilation
GntR/MocR	TF	PBPRB0322					2 PBPRB0322 Vibrio shilonii AK1					2 PBPRB0322 Photobacterium profundum SS9	Metabolite transport
	TF	PdxW		1 PdxW Vibrio vulnificus CMCP6	1 PdxW Vibrio harveyi ATCC BAA-1116	1 PdxW Vibrio parahaemolyticus RIMD 2210633	1 PdxW Vibrio shilonii AK1	1 PdxW Vibrio splendidus LGP32			1 PdxW Vibrio angustum S14		Pyridoxine/pyridoxal homeostasis
	TF	VEA_000881		1 VEA_000881 Vibrio vulnificus CMCP6	1 VEA_000881 Vibrio harveyi ATCC BAA-1116	1 VEA_000881 Vibrio parahaemolyticus RIMD 2210633		1 VEA_000881 Vibrio splendidus LGP32		1 VEA_000881 Vibrio salmonicida LFI1238	1 VEA_000881 Vibrio angustum S14	1 VEA_000881 Photobacterium profundum SS9	Metabolite transport
	TF	VSAK1_09283					2 VSAK1_09283 Vibrio shilonii AK1				2 VSAK1_09283 Vibrio angustum S14	2 VSAK1_09283 Photobacterium profundum SS9	Metabolite transport
	TF	VSAL_I1306								2 VSAL_I1306 Vibrio salmonicida LFI1238	2 VSAL_I1306 Vibrio angustum S14
	TF	VV21354		1 VV21354 Vibrio vulnificus CMCP6				1 VV21354 Vibrio splendidus LGP32			1 VV21354 Vibrio angustum S14		Metabolite transport
	TF	YdcR	1 YdcR Vibrio cholerae O1 biovar eltor str. N16961	2 YdcR Vibrio vulnificus CMCP6	2 YdcR Vibrio harveyi ATCC BAA-1116	3 YdcR Vibrio parahaemolyticus RIMD 2210633		3 YdcR Vibrio splendidus LGP32				1 YdcR Photobacterium profundum SS9
GntR/Others	TF	FadR	7 FadR Vibrio cholerae O1 biovar eltor str. N16961	7 FadR Vibrio vulnificus CMCP6	8 FadR Vibrio harveyi ATCC BAA-1116	7 FadR Vibrio parahaemolyticus RIMD 2210633	7 FadR Vibrio shilonii AK1	7 FadR Vibrio splendidus LGP32	7 FadR Vibrio fischeri ES114	8 FadR Vibrio salmonicida LFI1238	6 FadR Vibrio angustum S14	6 FadR Photobacterium profundum SS9	Fatty acid degradation
	TF	HutC	2 HutC Vibrio cholerae O1 biovar eltor str. N16961	2 HutC Vibrio vulnificus CMCP6	2 HutC Vibrio harveyi ATCC BAA-1116	2 HutC Vibrio parahaemolyticus RIMD 2210633	2 HutC Vibrio shilonii AK1	2 HutC Vibrio splendidus LGP32	2 HutC Vibrio fischeri ES114	2 HutC Vibrio salmonicida LFI1238	2 HutC Vibrio angustum S14	2 HutC Photobacterium profundum SS9	Histidine utilization
	TF	HypR				5 HypR Vibrio parahaemolyticus RIMD 2210633							Proline and 4-hydrohyproline utilization
	TF	PdhR	1 PdhR Vibrio cholerae O1 biovar eltor str. N16961	1 PdhR Vibrio vulnificus CMCP6	1 PdhR Vibrio harveyi ATCC BAA-1116	1 PdhR Vibrio parahaemolyticus RIMD 2210633	1 PdhR Vibrio shilonii AK1	1 PdhR Vibrio splendidus LGP32	1 PdhR Vibrio fischeri ES114	1 PdhR Vibrio salmonicida LFI1238	1 PdhR Vibrio angustum S14	1 PdhR Photobacterium profundum SS9	Pyruvate metabolism
	TF	PhnR	3 PhnR Vibrio cholerae O1 biovar eltor str. N16961	3 PhnR Vibrio vulnificus CMCP6	3 PhnR Vibrio harveyi ATCC BAA-1116	5 PhnR Vibrio parahaemolyticus RIMD 2210633	5 PhnR Vibrio shilonii AK1	3 PhnR Vibrio splendidus LGP32	1 PhnR Vibrio fischeri ES114	4 PhnR Vibrio salmonicida LFI1238	4 PhnR Vibrio angustum S14		Phosphonate utilization; 2-aminoethylphosphonate utilization
	TF	PrpR	1 PrpR Vibrio cholerae O1 biovar eltor str. N16961	1 PrpR Vibrio vulnificus CMCP6	1 PrpR Vibrio harveyi ATCC BAA-1116	1 PrpR Vibrio parahaemolyticus RIMD 2210633	1 PrpR Vibrio shilonii AK1	1 PrpR Vibrio splendidus LGP32				1 PrpR Photobacterium profundum SS9	Methylcitrate utilization
	TF	UxuR		3 UxuR Vibrio vulnificus CMCP6		4 UxuR Vibrio parahaemolyticus RIMD 2210633	3 UxuR Vibrio shilonii AK1					4 UxuR Photobacterium profundum SS9	Glucuronate utilization
	TF	VIBHAR_07005			1 VIBHAR_07005 Vibrio harveyi ATCC BAA-1116	1 VIBHAR_07005 Vibrio parahaemolyticus RIMD 2210633	1 VIBHAR_07005 Vibrio shilonii AK1	1 VIBHAR_07005 Vibrio splendidus LGP32				1 VIBHAR_07005 Photobacterium profundum SS9	Multidrug resistance; Multidrug efflux
	TF	VSAK1_25095					6 VSAK1_25095 Vibrio shilonii AK1					7 VSAK1_25095 Photobacterium profundum SS9	Xanthine utilization; Allantoin utilization
IclR	TF	KdgR		7 KdgR Vibrio vulnificus CMCP6		6 KdgR Vibrio parahaemolyticus RIMD 2210633	4 KdgR Vibrio shilonii AK1					6 KdgR Photobacterium profundum SS9	Pectin and polygalacturonate utlization
LacI	TF	BglR		2 BglR Vibrio vulnificus CMCP6	2 BglR Vibrio harveyi ATCC BAA-1116			2 BglR Vibrio splendidus LGP32					Beta-glucosides utilization
	TF	CelR	2 CelR Vibrio cholerae O1 biovar eltor str. N16961	2 CelR Vibrio vulnificus CMCP6	2 CelR Vibrio harveyi ATCC BAA-1116	2 CelR Vibrio parahaemolyticus RIMD 2210633						2 CelR Photobacterium profundum SS9	Cellobiose utilization
	TF	CelR2	1 CelR2 Vibrio cholerae O1 biovar eltor str. N16961						1 CelR2 Vibrio fischeri ES114	1 CelR2 Vibrio salmonicida LFI1238			Cellobiose utilization
	TF	CelR3					2 CelR3 Vibrio shilonii AK1					1 CelR3 Photobacterium profundum SS9	Cellobiose utilization
	TF	EbgR		2 EbgR Vibrio vulnificus CMCP6	1 EbgR Vibrio harveyi ATCC BAA-1116	2 EbgR Vibrio parahaemolyticus RIMD 2210633	2 EbgR Vibrio shilonii AK1		4 EbgR Vibrio fischeri ES114		2 EbgR Vibrio angustum S14	2 EbgR Photobacterium profundum SS9	Galactosides utilization
	TF	FruR	2 FruR Vibrio cholerae O1 biovar eltor str. N16961	2 FruR Vibrio vulnificus CMCP6	2 FruR Vibrio harveyi ATCC BAA-1116	2 FruR Vibrio parahaemolyticus RIMD 2210633	2 FruR Vibrio shilonii AK1	2 FruR Vibrio splendidus LGP32	2 FruR Vibrio fischeri ES114	2 FruR Vibrio salmonicida LFI1238	2 FruR Vibrio angustum S14	2 FruR Photobacterium profundum SS9	Fructose utilization
	TF	GalR	3 GalR Vibrio cholerae O1 biovar eltor str. N16961	6 GalR Vibrio vulnificus CMCP6	2 GalR Vibrio harveyi ATCC BAA-1116	2 GalR Vibrio parahaemolyticus RIMD 2210633	5 GalR Vibrio shilonii AK1		2 GalR Vibrio fischeri ES114		1 GalR Vibrio angustum S14	3 GalR Photobacterium profundum SS9	Galactose utilization
	TF	GntR	3 GntR Vibrio cholerae O1 biovar eltor str. N16961	3 GntR Vibrio vulnificus CMCP6	3 GntR Vibrio harveyi ATCC BAA-1116	2 GntR Vibrio parahaemolyticus RIMD 2210633	1 GntR Vibrio shilonii AK1	2 GntR Vibrio splendidus LGP32		3 GntR Vibrio salmonicida LFI1238	2 GntR Vibrio angustum S14		Gluconate utilization
	TF	MalI					2 MalI Vibrio shilonii AK1		2 MalI Vibrio fischeri ES114	1 MalI Vibrio salmonicida LFI1238	2 MalI Vibrio angustum S14		Maltose utilization
	TF	PurR	15 PurR Vibrio cholerae O1 biovar eltor str. N16961	15 PurR Vibrio vulnificus CMCP6	17 PurR Vibrio harveyi ATCC BAA-1116	15 PurR Vibrio parahaemolyticus RIMD 2210633	15 PurR Vibrio shilonii AK1	16 PurR Vibrio splendidus LGP32	15 PurR Vibrio fischeri ES114	13 PurR Vibrio salmonicida LFI1238	12 PurR Vibrio angustum S14	15 PurR Photobacterium profundum SS9	Purine metabolism
	TF	RbsR	1 RbsR Vibrio cholerae O1 biovar eltor str. N16961	1 RbsR Vibrio vulnificus CMCP6	1 RbsR Vibrio harveyi ATCC BAA-1116	1 RbsR Vibrio parahaemolyticus RIMD 2210633	1 RbsR Vibrio shilonii AK1	1 RbsR Vibrio splendidus LGP32	1 RbsR Vibrio fischeri ES114	1 RbsR Vibrio salmonicida LFI1238	1 RbsR Vibrio angustum S14	1 RbsR Photobacterium profundum SS9	Ribose utilization
	TF	ScrR	4 ScrR Vibrio cholerae O1 biovar eltor str. N16961										Sucrose utilization
	TF	SgaR		2 SgaR Vibrio vulnificus CMCP6		2 SgaR Vibrio parahaemolyticus RIMD 2210633							Ascorbate utilization
	TF	TreR	1 TreR Vibrio cholerae O1 biovar eltor str. N16961	1 TreR Vibrio vulnificus CMCP6	1 TreR Vibrio harveyi ATCC BAA-1116	1 TreR Vibrio parahaemolyticus RIMD 2210633	1 TreR Vibrio shilonii AK1	1 TreR Vibrio splendidus LGP32		1 TreR Vibrio salmonicida LFI1238		1 TreR Photobacterium profundum SS9	Trehalose utilization
	TF	VCA0673	3 VCA0673 Vibrio cholerae O1 biovar eltor str. N16961		3 VCA0673 Vibrio harveyi ATCC BAA-1116		1 VCA0673 Vibrio shilonii AK1			1 VCA0673 Vibrio salmonicida LFI1238
	TF	VF_1255		1 VF_1255 Vibrio vulnificus CMCP6			1 VF_1255 Vibrio shilonii AK1		1 VF_1255 Vibrio fischeri ES114	1 VF_1255 Vibrio salmonicida LFI1238		1 VF_1255 Photobacterium profundum SS9	Sugar utilization
	TF	VP2396				2 VP2396 Vibrio parahaemolyticus RIMD 2210633	2 VP2396 Vibrio shilonii AK1						Galactosides utilization
	TF	VVA0138		4 VVA0138 Vibrio vulnificus CMCP6									Sugar utilization
LexA	TF	LexA	17 LexA Vibrio cholerae O1 biovar eltor str. N16961	18 LexA Vibrio vulnificus CMCP6	20 LexA Vibrio harveyi ATCC BAA-1116	18 LexA Vibrio parahaemolyticus RIMD 2210633	17 LexA Vibrio shilonii AK1	16 LexA Vibrio splendidus LGP32	14 LexA Vibrio fischeri ES114	14 LexA Vibrio salmonicida LFI1238	13 LexA Vibrio angustum S14	12 LexA Photobacterium profundum SS9	SOS response
LuxR	TF	NarP	8 NarP Vibrio cholerae O1 biovar eltor str. N16961	11 NarP Vibrio vulnificus CMCP6	11 NarP Vibrio harveyi ATCC BAA-1116	13 NarP Vibrio parahaemolyticus RIMD 2210633	16 NarP Vibrio shilonii AK1	12 NarP Vibrio splendidus LGP32	16 NarP Vibrio fischeri ES114	11 NarP Vibrio salmonicida LFI1238	3 NarP Vibrio angustum S14	12 NarP Photobacterium profundum SS9	Nitrate and nitrite respiration
	TF	PhsR			2 PhsR Vibrio harveyi ATCC BAA-1116	2 PhsR Vibrio parahaemolyticus RIMD 2210633			2 PhsR Vibrio fischeri ES114				Thiosulfate reduction
	TF	TtrR				2 TtrR Vibrio parahaemolyticus RIMD 2210633	2 TtrR Vibrio shilonii AK1					2 TtrR Photobacterium profundum SS9	Tetrathionate reduction
LysR	TF	MetR	4 MetR Vibrio cholerae O1 biovar eltor str. N16961	5 MetR Vibrio vulnificus CMCP6	6 MetR Vibrio harveyi ATCC BAA-1116	5 MetR Vibrio parahaemolyticus RIMD 2210633	4 MetR Vibrio shilonii AK1	4 MetR Vibrio splendidus LGP32	5 MetR Vibrio fischeri ES114	3 MetR Vibrio salmonicida LFI1238	3 MetR Vibrio angustum S14	4 MetR Photobacterium profundum SS9	Methionine biosynthesis
MerR	TF	CueR	2 CueR Vibrio cholerae O1 biovar eltor str. N16961	3 CueR Vibrio vulnificus CMCP6	3 CueR Vibrio harveyi ATCC BAA-1116	3 CueR Vibrio parahaemolyticus RIMD 2210633	2 CueR Vibrio shilonii AK1	1 CueR Vibrio splendidus LGP32	3 CueR Vibrio fischeri ES114	3 CueR Vibrio salmonicida LFI1238	2 CueR Vibrio angustum S14	3 CueR Photobacterium profundum SS9	Copper resistance
	TF	LiuR		4 LiuR Vibrio vulnificus CMCP6	4 LiuR Vibrio harveyi ATCC BAA-1116	8 LiuR Vibrio parahaemolyticus RIMD 2210633	4 LiuR Vibrio shilonii AK1				4 LiuR Vibrio angustum S14	4 LiuR Photobacterium profundum SS9	Branched-chain amino acid degradation
	TF	NmlR				1 NmlR Vibrio parahaemolyticus RIMD 2210633					1 NmlR Vibrio angustum S14		Carbonyl stress response
	TF	PhrR	2 PhrR Vibrio cholerae O1 biovar eltor str. N16961	2 PhrR Vibrio vulnificus CMCP6	2 PhrR Vibrio harveyi ATCC BAA-1116	2 PhrR Vibrio parahaemolyticus RIMD 2210633	2 PhrR Vibrio shilonii AK1				1 PhrR Vibrio angustum S14		Light-dependent DNA repair
	TF	SoxR	2 SoxR Vibrio cholerae O1 biovar eltor str. N16961	4 SoxR Vibrio vulnificus CMCP6	4 SoxR Vibrio harveyi ATCC BAA-1116	5 SoxR Vibrio parahaemolyticus RIMD 2210633	3 SoxR Vibrio shilonii AK1	1 SoxR Vibrio splendidus LGP32			3 SoxR Vibrio angustum S14	2 SoxR Photobacterium profundum SS9	Superoxide stress response
	TF	ZntR	1 ZntR Vibrio cholerae O1 biovar eltor str. N16961	1 ZntR Vibrio vulnificus CMCP6	1 ZntR Vibrio harveyi ATCC BAA-1116	1 ZntR Vibrio parahaemolyticus RIMD 2210633	1 ZntR Vibrio shilonii AK1	1 ZntR Vibrio splendidus LGP32	1 ZntR Vibrio fischeri ES114	1 ZntR Vibrio salmonicida LFI1238	1 ZntR Vibrio angustum S14	1 ZntR Photobacterium profundum SS9	Zinc resistance
MetJ	TF	MetJ	11 MetJ Vibrio cholerae O1 biovar eltor str. N16961	12 MetJ Vibrio vulnificus CMCP6	13 MetJ Vibrio harveyi ATCC BAA-1116	13 MetJ Vibrio parahaemolyticus RIMD 2210633	12 MetJ Vibrio shilonii AK1	11 MetJ Vibrio splendidus LGP32	11 MetJ Vibrio fischeri ES114	10 MetJ Vibrio salmonicida LFI1238	12 MetJ Vibrio angustum S14	11 MetJ Photobacterium profundum SS9	Methionine metabolism; Methionine biosynthesis
ModE	TF	ModE									1 ModE Vibrio angustum S14	1 ModE Photobacterium profundum SS9	Molybdenum homeostasis
NrdR	TF	NrdR	2 NrdR Vibrio cholerae O1 biovar eltor str. N16961	2 NrdR Vibrio vulnificus CMCP6	2 NrdR Vibrio harveyi ATCC BAA-1116	2 NrdR Vibrio parahaemolyticus RIMD 2210633	2 NrdR Vibrio shilonii AK1	2 NrdR Vibrio splendidus LGP32	2 NrdR Vibrio fischeri ES114	2 NrdR Vibrio salmonicida LFI1238	2 NrdR Vibrio angustum S14	2 NrdR Photobacterium profundum SS9	Deoxyribonucleotide biosynthesis
NrtR	TF	NrtR	2 NrtR Vibrio cholerae O1 biovar eltor str. N16961	2 NrtR Vibrio vulnificus CMCP6	2 NrtR Vibrio harveyi ATCC BAA-1116	2 NrtR Vibrio parahaemolyticus RIMD 2210633							NAD biosynthesis
ROK	TF	NagC	20 NagC Vibrio cholerae O1 biovar eltor str. N16961	21 NagC Vibrio vulnificus CMCP6	17 NagC Vibrio harveyi ATCC BAA-1116	19 NagC Vibrio parahaemolyticus RIMD 2210633	14 NagC Vibrio shilonii AK1	18 NagC Vibrio splendidus LGP32	20 NagC Vibrio fischeri ES114	14 NagC Vibrio salmonicida LFI1238	11 NagC Vibrio angustum S14	17 NagC Photobacterium profundum SS9	N-acetylglucosamine utilization
RpiR	TF	HexR	15 HexR Vibrio cholerae O1 biovar eltor str. N16961	16 HexR Vibrio vulnificus CMCP6	16 HexR Vibrio harveyi ATCC BAA-1116	16 HexR Vibrio parahaemolyticus RIMD 2210633	12 HexR Vibrio shilonii AK1	12 HexR Vibrio splendidus LGP32	14 HexR Vibrio fischeri ES114	15 HexR Vibrio salmonicida LFI1238	13 HexR Vibrio angustum S14	20 HexR Photobacterium profundum SS9	Central carbohydrate metabolism
	TF	NanR (SiaQ)	3 NanR (SiaQ) Vibrio cholerae O1 biovar eltor str. N16961	2 NanR (SiaQ) Vibrio vulnificus CMCP6			1 NanR (SiaQ) Vibrio shilonii AK1						Sialic acid utilization
	TF	SiaR							5 SiaR Vibrio fischeri ES114	2 SiaR Vibrio salmonicida LFI1238		4 SiaR Photobacterium profundum SS9	Sialic acid utilization
Rrf2	TF	IscR	3 IscR Vibrio cholerae O1 biovar eltor str. N16961	3 IscR Vibrio vulnificus CMCP6	3 IscR Vibrio harveyi ATCC BAA-1116	3 IscR Vibrio parahaemolyticus RIMD 2210633	3 IscR Vibrio shilonii AK1	2 IscR Vibrio splendidus LGP32	3 IscR Vibrio fischeri ES114	3 IscR Vibrio salmonicida LFI1238	3 IscR Vibrio angustum S14	3 IscR Photobacterium profundum SS9	Iron-sulfur cluster biogenesis
	TF	NsrR		3 NsrR Vibrio vulnificus CMCP6	4 NsrR Vibrio harveyi ATCC BAA-1116	3 NsrR Vibrio parahaemolyticus RIMD 2210633		1 NsrR Vibrio splendidus LGP32	4 NsrR Vibrio fischeri ES114	4 NsrR Vibrio salmonicida LFI1238	5 NsrR Vibrio angustum S14	5 NsrR Photobacterium profundum SS9	Nitrosative stress response
SdaR	TF	SdaR	1 SdaR Vibrio cholerae O1 biovar eltor str. N16961	1 SdaR Vibrio vulnificus CMCP6	1 SdaR Vibrio harveyi ATCC BAA-1116	1 SdaR Vibrio parahaemolyticus RIMD 2210633			1 SdaR Vibrio fischeri ES114	1 SdaR Vibrio salmonicida LFI1238		1 SdaR Photobacterium profundum SS9	Glycerate utilization
TetR	TF	FabR	4 FabR Vibrio cholerae O1 biovar eltor str. N16961	5 FabR Vibrio vulnificus CMCP6	6 FabR Vibrio harveyi ATCC BAA-1116	6 FabR Vibrio parahaemolyticus RIMD 2210633	4 FabR Vibrio shilonii AK1	6 FabR Vibrio splendidus LGP32	6 FabR Vibrio fischeri ES114	6 FabR Vibrio salmonicida LFI1238	5 FabR Vibrio angustum S14	6 FabR Photobacterium profundum SS9	Fatty acid biosynthesis
	TF	PsrA	6 PsrA Vibrio cholerae O1 biovar eltor str. N16961	6 PsrA Vibrio vulnificus CMCP6	6 PsrA Vibrio harveyi ATCC BAA-1116	6 PsrA Vibrio parahaemolyticus RIMD 2210633	5 PsrA Vibrio shilonii AK1	5 PsrA Vibrio splendidus LGP32			6 PsrA Vibrio angustum S14	6 PsrA Photobacterium profundum SS9	Fatty acid degradation
	TF	RutR					1 RutR Vibrio shilonii AK1					1 RutR Photobacterium profundum SS9	Pyrimidine utilization
TrpR	TF	TrpR	2 TrpR Vibrio cholerae O1 biovar eltor str. N16961	3 TrpR Vibrio vulnificus CMCP6	2 TrpR Vibrio harveyi ATCC BAA-1116	3 TrpR Vibrio parahaemolyticus RIMD 2210633	3 TrpR Vibrio shilonii AK1	2 TrpR Vibrio splendidus LGP32	2 TrpR Vibrio fischeri ES114	2 TrpR Vibrio salmonicida LFI1238	3 TrpR Vibrio angustum S14	2 TrpR Photobacterium profundum SS9	Tryptophan biosynthesis
TyrR	TF	TyrR	6 TyrR Vibrio cholerae O1 biovar eltor str. N16961	8 TyrR Vibrio vulnificus CMCP6	6 TyrR Vibrio harveyi ATCC BAA-1116	7 TyrR Vibrio parahaemolyticus RIMD 2210633	8 TyrR Vibrio shilonii AK1	8 TyrR Vibrio splendidus LGP32	4 TyrR Vibrio fischeri ES114	4 TyrR Vibrio salmonicida LFI1238	7 TyrR Vibrio angustum S14	6 TyrR Photobacterium profundum SS9	Aromatic amino acid metabolism
RF00050	RNA	FMN	1 FMN Vibrio cholerae O1 biovar eltor str. N16961	1 FMN Vibrio vulnificus CMCP6	1 FMN Vibrio harveyi ATCC BAA-1116	1 FMN Vibrio parahaemolyticus RIMD 2210633	1 FMN Vibrio shilonii AK1	1 FMN Vibrio splendidus LGP32			1 FMN Vibrio angustum S14	1 FMN Photobacterium profundum SS9	Riboflavin biosynthesis
RF00059	RNA	TPP	3 TPP Vibrio cholerae O1 biovar eltor str. N16961	3 TPP Vibrio vulnificus CMCP6	3 TPP Vibrio harveyi ATCC BAA-1116	3 TPP Vibrio parahaemolyticus RIMD 2210633	3 TPP Vibrio shilonii AK1	3 TPP Vibrio splendidus LGP32	3 TPP Vibrio fischeri ES114	3 TPP Vibrio salmonicida LFI1238	3 TPP Vibrio angustum S14	3 TPP Photobacterium profundum SS9	Thiamine biosynthesis
RF00080	RNA	yybP-ykoY	2 yybP-ykoY Vibrio cholerae O1 biovar eltor str. N16961	3 yybP-ykoY Vibrio vulnificus CMCP6	2 yybP-ykoY Vibrio harveyi ATCC BAA-1116	2 yybP-ykoY Vibrio parahaemolyticus RIMD 2210633	2 yybP-ykoY Vibrio shilonii AK1	2 yybP-ykoY Vibrio splendidus LGP32	2 yybP-ykoY Vibrio fischeri ES114	3 yybP-ykoY Vibrio salmonicida LFI1238	2 yybP-ykoY Vibrio angustum S14	2 yybP-ykoY Photobacterium profundum SS9
RF00114	RNA	S15	1 S15 Vibrio cholerae O1 biovar eltor str. N16961	1 S15 Vibrio vulnificus CMCP6		1 S15 Vibrio parahaemolyticus RIMD 2210633	1 S15 Vibrio shilonii AK1	1 S15 Vibrio splendidus LGP32	1 S15 Vibrio fischeri ES114	1 S15 Vibrio salmonicida LFI1238	1 S15 Vibrio angustum S14	1 S15 Photobacterium profundum SS9	Ribosome biogenesis
RF00167	RNA	Purine		1 Purine Vibrio vulnificus CMCP6	1 Purine Vibrio harveyi ATCC BAA-1116	1 Purine Vibrio parahaemolyticus RIMD 2210633	1 Purine Vibrio shilonii AK1	1 Purine Vibrio splendidus LGP32				1 Purine Photobacterium profundum SS9	Purine metabolism
RF00168	RNA	Lysine	3 Lysine Vibrio cholerae O1 biovar eltor str. N16961	2 Lysine Vibrio vulnificus CMCP6	2 Lysine Vibrio harveyi ATCC BAA-1116	2 Lysine Vibrio parahaemolyticus RIMD 2210633	2 Lysine Vibrio shilonii AK1	2 Lysine Vibrio splendidus LGP32	2 Lysine Vibrio fischeri ES114	1 Lysine Vibrio salmonicida LFI1238	3 Lysine Vibrio angustum S14	3 Lysine Photobacterium profundum SS9	Lysine biosynthesis
RF00174	RNA	Cobalamin	1 Cobalamin Vibrio cholerae O1 biovar eltor str. N16961	1 Cobalamin Vibrio vulnificus CMCP6	1 Cobalamin Vibrio harveyi ATCC BAA-1116	1 Cobalamin Vibrio parahaemolyticus RIMD 2210633	1 Cobalamin Vibrio shilonii AK1	2 Cobalamin Vibrio splendidus LGP32	2 Cobalamin Vibrio fischeri ES114	2 Cobalamin Vibrio salmonicida LFI1238	1 Cobalamin Vibrio angustum S14	1 Cobalamin Photobacterium profundum SS9	Cobalamin biosynthesis
RF00380	RNA	ykoK	1 ykoK Vibrio cholerae O1 biovar eltor str. N16961										Magnesium homeostasis
RF00504	RNA	Glycine	1 Glycine Vibrio cholerae O1 biovar eltor str. N16961	1 Glycine Vibrio vulnificus CMCP6	1 Glycine Vibrio harveyi ATCC BAA-1116	1 Glycine Vibrio parahaemolyticus RIMD 2210633	1 Glycine Vibrio shilonii AK1	1 Glycine Vibrio splendidus LGP32	1 Glycine Vibrio fischeri ES114	1 Glycine Vibrio salmonicida LFI1238	1 Glycine Vibrio angustum S14	1 Glycine Photobacterium profundum SS9	Glycine metabolism
RF00506	RNA	Thr_leader	1 Thr_leader Vibrio cholerae O1 biovar eltor str. N16961	1 Thr_leader Vibrio vulnificus CMCP6	1 Thr_leader Vibrio harveyi ATCC BAA-1116	1 Thr_leader Vibrio parahaemolyticus RIMD 2210633	1 Thr_leader Vibrio shilonii AK1	1 Thr_leader Vibrio splendidus LGP32	1 Thr_leader Vibrio fischeri ES114	1 Thr_leader Vibrio salmonicida LFI1238	1 Thr_leader Vibrio angustum S14	1 Thr_leader Photobacterium profundum SS9	Threonine biosynthesis
RF00512	RNA	Leu_leader	1 Leu_leader Vibrio cholerae O1 biovar eltor str. N16961	1 Leu_leader Vibrio vulnificus CMCP6	1 Leu_leader Vibrio harveyi ATCC BAA-1116	1 Leu_leader Vibrio parahaemolyticus RIMD 2210633	1 Leu_leader Vibrio shilonii AK1	1 Leu_leader Vibrio splendidus LGP32	1 Leu_leader Vibrio fischeri ES114	1 Leu_leader Vibrio salmonicida LFI1238	1 Leu_leader Vibrio angustum S14	1 Leu_leader Photobacterium profundum SS9	Branched-chain amino acid biosynthesis
RF00513	RNA	Trp_leader	1 Trp_leader Vibrio cholerae O1 biovar eltor str. N16961	1 Trp_leader Vibrio vulnificus CMCP6	1 Trp_leader Vibrio harveyi ATCC BAA-1116	1 Trp_leader Vibrio parahaemolyticus RIMD 2210633	1 Trp_leader Vibrio shilonii AK1	1 Trp_leader Vibrio splendidus LGP32	1 Trp_leader Vibrio fischeri ES114	1 Trp_leader Vibrio salmonicida LFI1238	1 Trp_leader Vibrio angustum S14	1 Trp_leader Photobacterium profundum SS9	Tryptophan biosynthesis
RF00514	RNA	His_leader	1 His_leader Vibrio cholerae O1 biovar eltor str. N16961	1 His_leader Vibrio vulnificus CMCP6	1 His_leader Vibrio harveyi ATCC BAA-1116	1 His_leader Vibrio parahaemolyticus RIMD 2210633	1 His_leader Vibrio shilonii AK1	1 His_leader Vibrio splendidus LGP32	1 His_leader Vibrio fischeri ES114	1 His_leader Vibrio salmonicida LFI1238	1 His_leader Vibrio angustum S14	1 His_leader Photobacterium profundum SS9	Histidine biosynthesis
RF00557	RNA	L10_leader						1 L10_leader Vibrio splendidus LGP32	1 L10_leader Vibrio fischeri ES114	1 L10_leader Vibrio salmonicida LFI1238			Ribosome biogenesis
RF01051	RNA	GEMM_RNA_motif	2 GEMM_RNA_motif Vibrio cholerae O1 biovar eltor str. N16961	2 GEMM_RNA_motif Vibrio vulnificus CMCP6	1 GEMM_RNA_motif Vibrio harveyi ATCC BAA-1116	2 GEMM_RNA_motif Vibrio parahaemolyticus RIMD 2210633	1 GEMM_RNA_motif Vibrio shilonii AK1	1 GEMM_RNA_motif Vibrio splendidus LGP32	1 GEMM_RNA_motif Vibrio fischeri ES114	1 GEMM_RNA_motif Vibrio salmonicida LFI1238	1 GEMM_RNA_motif Vibrio angustum S14	3 GEMM_RNA_motif Photobacterium profundum SS9	Second messenger response
RF01055	RNA	MOCO_RNA_motif	1 MOCO_RNA_motif Vibrio cholerae O1 biovar eltor str. N16961	1 MOCO_RNA_motif Vibrio vulnificus CMCP6	1 MOCO_RNA_motif Vibrio harveyi ATCC BAA-1116	1 MOCO_RNA_motif Vibrio parahaemolyticus RIMD 2210633	1 MOCO_RNA_motif Vibrio shilonii AK1	1 MOCO_RNA_motif Vibrio splendidus LGP32	1 MOCO_RNA_motif Vibrio fischeri ES114	1 MOCO_RNA_motif Vibrio salmonicida LFI1238	1 MOCO_RNA_motif Vibrio angustum S14	1 MOCO_RNA_motif Photobacterium profundum SS9	Molybdopterin biosynthesis; Molybdenum homeostasis
RF01068	RNA	mini-ykkC	1 mini-ykkC Vibrio cholerae O1 biovar eltor str. N16961		1 mini-ykkC Vibrio harveyi ATCC BAA-1116	1 mini-ykkC Vibrio parahaemolyticus RIMD 2210633							Multidrug resistance

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Collection of regulogs in Vibrionales taxonomic group

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --