Regulon of ArgR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_07644 |
| Regulator family: | ArgR |
| Regulation mode: | repressor (activator) |
| Biological process: | Arginine biosynthesis; Arginine degradation |
| Effector: | Arginine |
| Regulog: | ArgR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 8 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - ArgR
- By taxonomy - Vibrionales
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
- By pathway - Arginine degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -248
Score: 3.9 Sequence: TACGTTTTTTTATGCACA
Locus tag: VSAK1_02034
Name: arcA Funciton: Arginine deiminase (EC 3.5.3.6) |
|||
|
arcA
|
Arginine deiminase (EC 3.5.3.6)
|
||
|
Position: -84
Score: 4.2 Sequence: TTAAAATTTTTATACATT
Position: -26
Score: 4.1 Sequence: AATGATTTTTAATGCAGT
Locus tag: VSAK1_21964
Name: artP Funciton: Arginine ABC transporter, ATP-binding protein
Locus tag: VSAK1_21959
Name: artI Funciton: Arginine ABC transporter, substrate-binding protein
Locus tag: VSAK1_21954
Name: artQ Funciton: Arginine ABC transporter, permease protein 1
Locus tag: VSAK1_21949
Name: artM Funciton: Arginine ABC transporter, permease protein 2 |
|||
|
artP
|
Arginine ABC transporter, ATP-binding protein
|
||
|
artI
|
Arginine ABC transporter, substrate-binding protein
|
||
|
artQ
|
Arginine ABC transporter, permease protein 1
|
||
|
artM
|
Arginine ABC transporter, permease protein 2
|
||
|
Position: -170
Score: 4.3 Sequence: TTTGAATATTTATGTGAA
Position: -149
Score: 4.3 Sequence: AATGAATTTTTACTTTAT
Locus tag: VSAK1_09423
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1) |
|||
|
argH
|
Argininosuccinate lyase (EC 4.3.2.1) / N-acetylglutamate synthase (EC 2.3.1.1)
|
||
|
Position: -136
Score: 4.3 Sequence: AACACATATTAAATCAAA
Position: -115
Score: 4.9 Sequence: AATGAATAAAAAATCAAT
Locus tag: VSAK1_09443
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: VSAK1_09438
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: VSAK1_09433
Name: argG Funciton: Argininosuccinate synthase (EC 6.3.4.5) |
|||
|
argC
|
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
|
||
|
argB
|
Acetylglutamate kinase (EC 2.7.2.8)
|
||
|
argG
|
Argininosuccinate synthase (EC 6.3.4.5)
|
||
|
Position: -84
Score: 4.7 Sequence: ATTGATTTTTTATTCATT
Position: -63
Score: 4.1 Sequence: TTTGATTTAATATGTGTT
Locus tag: VSAK1_09448
Name: argE Funciton: Acetylornithine deacetylase (EC 3.5.1.16) |
|||
|
argE
|
Acetylornithine deacetylase (EC 3.5.1.16)
|
||
|
Position: -345
Score: 3.8 Sequence: TTTACTTATTAAATTGAA
Position: -150
Score: 3.9 Sequence: AATAATTGTAAATACAAT
Locus tag: VSAK1_09328
Name: argD Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: VSAK1_09323
Name: astA Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: VSAK1_09318
Name: astD Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) |
|||
|
argD
|
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
|
||
|
astA
|
Arginine N-succinyltransferase (EC 2.3.1.109)
|
||
|
astD
|
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
|
||
|
Position: -128
Score: 4.3 Sequence: ACTGAATAAAAAGTCATT
Locus tag: VSAK1_08616
Name: argA Funciton: N-acetylglutamate synthase (EC 2.3.1.1) |
|||
|
argA
|
N-acetylglutamate synthase (EC 2.3.1.1)
|
||
|
Position: -134
Score: 3.6 Sequence: ATGGCATTTAAACATAAT
Position: -126
Score: 3.8 Sequence: TAAACATAATTATTTATC
Position: -80
Score: 3.7 Sequence: ATTAAATCAAAATACTTA
Position: -74
Score: 3.6 Sequence: TCAAAATACTTATTCACA
Position: -53
Score: 4.6 Sequence: AAAGAATTTTTATGTATA
Position: -43
Score: 3.7 Sequence: TATGTATAAATAAACCAA
Locus tag: VSAK1_02029
Name: argF Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3) |
|||
|
argF
|
Ornithine carbamoyltransferase (EC 2.1.3.3)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |