Regulog NsrR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NsrR
- By taxonomy - Vibrionales
- By TF family - Rrf2
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | 3 | 3 |
| Vibrio harveyi ATCC BAA-1116 | 4 | 4 |
| Vibrio parahaemolyticus RIMD 2210633 | 3 | 3 |
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | 2 | 1 |
| Vibrio fischeri ES114 | 4 | 4 |
| Vibrio salmonicida LFI1238 | 4 | 4 |
| Vibrio angustum S14 | 5 | 5 |
| Photobacterium profundum SS9 | 6 | 5 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| aox |
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*
Vibrio harveyi ATCC BAA-1116 Site: position = -42 score = 5.44 sequence = GTTGTATTTTAAATACAAC Gene: VIBHAR_00951: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
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2
Vibrio shilonii AK1 Gene: VSAK1_25835: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) Gene: VSAK1_25840: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
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*
Vibrio fischeri ES114 Site: position = -41 score = 5.33 sequence = GGTGTATTTTAAATGCAAC Gene: VF_0578: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
*
Vibrio salmonicida LFI1238 Site: position = -39 score = 5.43 sequence = GTTGTATTTTAAATGCAAC Gene: VSAL_I0677: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
*
Vibrio angustum S14 Site: position = -42 score = 5.5 sequence = CATGTATTATTAATAAATG Gene: VAS14_04708: Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
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Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) |
| CRON 2. | |||||||||||
| norR2 |
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Gene: VP1190: Sigma-54 dependent nitrosative stress transcriptional regulator NorR |
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*
Vibrio angustum S14 Site: position = -118 score = 5.08 sequence = CATTCATATGAAATACATC Gene: VAS14_14734: Sigma-54 dependent nitrosative stress transcriptional regulator NorR |
Gene: PBPRB1897: Sigma-54 dependent nitrosative stress transcriptional regulator NorR |
Sigma-54 dependent nitrosative stress transcriptional regulator NorR |
| CRON 3. | |||||||||||
| norV |
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Gene: VV21343: Anaerobic nitric oxide reductase flavorubredoxin |
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Gene: VSAK1_23834: Anaerobic nitric oxide reductase flavorubredoxin |
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Gene: VF_1782: Anaerobic nitric oxide reductase flavorubredoxin |
Gene: VSAL_I2199: Anaerobic nitric oxide reductase flavorubredoxin |
|
*
Photobacterium profundum SS9 Site: position = -95 score = 5.68 sequence = CATGTATTATTTATACATG Site: position = -43 score = 4.57 sequence = CATGCATTCAAAATACGAG Gene: PBPRA1144: Anaerobic nitric oxide reductase flavorubredoxin |
Anaerobic nitric oxide reductase flavorubredoxin |
| norW |
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Gene: VV21344: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: VSAK1_23839: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: VF_1781: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: VSAL_I2200: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: PBPRA1143: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
| tehB |
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Gene: VV21345: putative tellurite resistance protein B |
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2
Vibrio shilonii AK1 Gene: VSAK1_17902: putative tellurite resistance protein B Gene: VSAK1_23844: putative tellurite resistance protein B |
Gene: VS_II0151: putative tellurite resistance protein B |
Gene: VF_1779: putative tellurite resistance protein B |
Gene: VSAL_I2202: putative tellurite resistance protein B |
|
*
Photobacterium profundum SS9 Site: position = -80 score = 5.03 sequence = GATGTATTATTTACACATC Gene: PBPRA2631: putative tellurite resistance protein B |
putative tellurite resistance protein B |
| CRON 4. | |||||||||||
| hmp |
Gene: VCA0183: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio vulnificus CMCP6 Site: position = -81 score = 4.79 sequence = GATACATTTGAGATACAAC Site: position = -56 score = 5.11 sequence = CATGCATTACAGATGCAAC Gene: VV1_1301: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -62 score = 4.79 sequence = GATACATTTGAGATACAAC Site: position = -37 score = 5.43 sequence = CATGCATTACAAATACAAC Gene: VIBHAR_00087: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -63 score = 4.79 sequence = GATACATTTGAGATACAAC Site: position = -38 score = 5.43 sequence = CATGCATTACAAATACAAC Gene: VP2809: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VSAK1_23194: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Gene: VS_II0564: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio fischeri ES114 Site: position = -60 score = 5.0 sequence = GATATATTTTAGATACAAC Site: position = -35 score = 5.24 sequence = CATACATTATAAATACACC Gene: VF_2316: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio salmonicida LFI1238 Site: position = -86 score = 5.0 sequence = GATATATTTTAGATACAAC Site: position = -61 score = 5.34 sequence = CATACATTATAAATACAAC Gene: VSAL_I2770: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Vibrio angustum S14 Site: position = -33 score = 5.31 sequence = CATATATTACAAATACATC Gene: VAS14_18799: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
*
Photobacterium profundum SS9 Site: position = -33 score = 5.05 sequence = GGTGCATTATAAATATAAC Gene: PBPRA3343: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| CRON 5. | |||||||||||
| nsrR |
|
*
Vibrio vulnificus CMCP6 Site: position = -93 score = 5.11 sequence = GTTGCATCTGTAATGCATG Site: position = -68 score = 4.79 sequence = GTTGTATCTCAAATGTATC Gene: VV1_1302: Nitrite-sensitive transcriptional repressor NsrR |
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Vibrio harveyi ATCC BAA-1116 Site: position = -93 score = 5.43 sequence = GTTGTATTTGTAATGCATG Site: position = -68 score = 4.79 sequence = GTTGTATCTCAAATGTATC Gene: VIBHAR_00086: Nitrite-sensitive transcriptional repressor NsrR |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -139 score = 5.43 sequence = GTTGTATTTGTAATGCATG Site: position = -114 score = 4.79 sequence = GTTGTATCTCAAATGTATC Gene: VP2808: Nitrite-sensitive transcriptional repressor NsrR |
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*
Vibrio splendidus LGP32 Site: position = -41 score = 5.26 sequence = GATTCATAATAAATACATC Gene: VS_0945: Nitrite-sensitive transcriptional repressor NsrR |
*
Vibrio fischeri ES114 Site: position = -90 score = 5.24 sequence = GGTGTATTTATAATGTATG Site: position = -65 score = 5.0 sequence = GTTGTATCTAAAATATATC Gene: VF_2315: Nitrite-sensitive transcriptional repressor NsrR |
*
Vibrio salmonicida LFI1238 Site: position = -92 score = 5.34 sequence = GTTGTATTTATAATGTATG Site: position = -67 score = 5.0 sequence = GTTGTATCTAAAATATATC Gene: VSAL_I2769: Nitrite-sensitive transcriptional repressor NsrR |
*
Vibrio angustum S14 Site: position = -88 score = 5.31 sequence = GATGTATTTGTAATATATG Gene: VAS14_18794: Nitrite-sensitive transcriptional repressor NsrR |
*
Photobacterium profundum SS9 Site: position = -88 score = 5.05 sequence = GTTATATTTATAATGCACC Gene: PBPRA3342: Nitrite-sensitive transcriptional repressor NsrR |
Nitrite-sensitive transcriptional repressor NsrR |
| nnrS |
Gene: VC2330: NnrS protein involved in response to NO |
*
Vibrio vulnificus CMCP6 Site: position = -99 score = 5.6 sequence = GTTGTATTTTTAATGCATC Gene: VV1_1781: NnrS protein involved in response to NO |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -47 score = 5.66 sequence = CATGTATTTTTTATGCATG Gene: VIBHAR_03317: NnrS protein involved in response to NO |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -83 score = 5.66 sequence = CATGTATTTTTTATGCATG Gene: VP2390: NnrS protein involved in response to NO |
Gene: VSAK1_10668: NnrS protein involved in response to NO |
2
Vibrio splendidus LGP32 Gene: VS_2426: NnrS protein involved in response to NO Gene: VS_0946: NnrS protein involved in response to NO |
*
Vibrio fischeri ES114 Site: position = -75 score = 5.66 sequence = CATGCATAAAAAATACATG Gene: VF_A0439: NnrS protein involved in response to NO |
*
Vibrio salmonicida LFI1238 Site: position = -78 score = 5.66 sequence = CATGCATAAAAAATACATG Gene: VSAL_II0720: NnrS protein involved in response to NO |
*
Vibrio angustum S14 Site: position = -37 score = 5.67 sequence = CATGTATAATTAATGCATG Gene: VAS14_11974: NnrS protein involved in response to NO |
*
Photobacterium profundum SS9 Site: position = -48 score = 5.07 sequence = GGTGTATCATTTATGCATG Gene: PBPRB0907: NnrS protein involved in response to NO |
NnrS protein involved in response to NO |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |