Regulog NarP - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 26 | 8 |
| Vibrio vulnificus CMCP6 | 39 | 11 |
| Vibrio harveyi ATCC BAA-1116 | 40 | 11 |
| Vibrio parahaemolyticus RIMD 2210633 | 44 | 13 |
| Vibrio shilonii AK1 | 50 | 16 |
| Vibrio splendidus LGP32 | 33 | 12 |
| Vibrio fischeri ES114 | 50 | 16 |
| Vibrio salmonicida LFI1238 | 29 | 11 |
| Vibrio angustum S14 | 10 | 3 |
| Photobacterium profundum SS9 | 37 | 12 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| cysG2 |
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*
Vibrio shilonii AK1 Site: position = -285 score = 5.30814 sequence = TACCACTaaAGTGGTA Gene: VSAK1_03740: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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*
Photobacterium profundum SS9 Site: position = -262 score = 4.85982 sequence = TACTACTAAAGGGTTA Gene: PBPRA2524: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| nirB2 |
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Gene: VSAK1_03745: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Vibrio splendidus LGP32 Site: position = -249 score = 5.38733 sequence = TACCACTTTAGGGGTA Gene: VS_II1027: Nitrite reductase large subunit (EC 1.7.1.4) |
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Gene: PBPRA2523: Nitrite reductase large subunit (EC 1.7.1.4) |
Nitrite reductase large subunit (EC 1.7.1.4) |
| nirD2 |
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Gene: VSAK1_03750: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: VS_II1028: Nitrite reductase small subunit (EC 1.7.1.4) |
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Gene: PBPRA2522: Nitrite reductase small subunit (EC 1.7.1.4) |
Nitrite reductase small subunit (EC 1.7.1.4) |
| narK2 |
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Gene: VSAK1_03755: Nitrate/nitrite antiporter |
Gene: VS_II1029: Nitrate/nitrite antiporter |
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Gene: PBPRA2521: Nitrate/nitrite antiporter |
Nitrate/nitrite antiporter |
| CRON 2. | |||||||||||
| adhE |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -192 score = 4.13286 sequence = TACCACTTGTTAGGTA Gene: VC2033: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio vulnificus CMCP6 Site: position = -208 score = 4.64815 sequence = CACCACTTTGGGGGTA Gene: VV1_3111: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -191 score = 4.37649 sequence = CACTACTTTGGGGGTA Gene: VIBHAR_03018: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -192 score = 4.29167 sequence = CACTACTTTGGTGGTA Gene: VP2121: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio shilonii AK1 Site: position = -199 score = 4.19466 sequence = TTACCCTTAATGGTTA Site: position = -185 score = 4.43753 sequence = TACTACTAAGTAGGTA Gene: VSAK1_03569: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio splendidus LGP32 Site: position = -176 score = 4.12936 sequence = TACTACTTTTTGGTTA Site: position = -162 score = 4.13436 sequence = TAATTCTTTTTGGGTA Gene: VS_0958: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: VF_0918: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Vibrio salmonicida LFI1238 Site: position = -217 score = 4.00629 sequence = TACAACGAAAGTGGTA Gene: VSAL_I1855: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: VAS14_18001: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: PBPRA1103: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
| CRON 3. | |||||||||||
| torE |
Gene: VC1694: Trimethylamine N-oxide reductase, component TorE |
Gene: VV1_2897: Trimethylamine N-oxide reductase, component TorE |
Gene: VIBHAR_01855: Trimethylamine N-oxide reductase, component TorE |
Gene: VP1160: Trimethylamine N-oxide reductase, component TorE |
*
Vibrio shilonii AK1 Site: position = -277 score = 4.3401 sequence = TTACTCTAAAGGGTTA Gene: VSAK1_04362: Trimethylamine N-oxide reductase, component TorE |
*
Vibrio splendidus LGP32 Site: position = -297 score = 4.54146 sequence = TACTACTTAGTAGGTA Gene: VS_2005: Trimethylamine N-oxide reductase, component TorE |
*
Vibrio fischeri ES114 Site: position = -257 score = 4.59594 sequence = TTACTCTTTAGGGGTA Gene: VF_A0297: Trimethylamine N-oxide reductase, component TorE |
Gene: VSAL_II0774: Trimethylamine N-oxide reductase, component TorE |
*
Vibrio angustum S14 Site: position = -111 score = 3.97082 sequence = TAACTCTCAAGTATTA Gene: VAS14_04593: Trimethylamine N-oxide reductase, component TorE |
|
Trimethylamine N-oxide reductase, component TorE |
| torC |
Gene: VC1693: Trimethylamine N-oxide reductase, component TorC |
Gene: VV1_2896: Trimethylamine N-oxide reductase, component TorC |
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Gene: VP1161: Trimethylamine N-oxide reductase, component TorC |
Gene: VSAK1_04367: Trimethylamine N-oxide reductase, component TorC |
Gene: VS_2004: Trimethylamine N-oxide reductase, component TorC |
Gene: VF_A0298: Trimethylamine N-oxide reductase, component TorC |
Gene: VSAL_II0773: Trimethylamine N-oxide reductase, component TorC |
Gene: VAS14_04598: Trimethylamine N-oxide reductase, component TorC |
Gene: PBPRA1468: Trimethylamine N-oxide reductase, component TorC |
Trimethylamine N-oxide reductase, component TorC |
| torA |
Gene: VC1692: Trimethylamine N-oxide reductase, component TorA |
Gene: VV1_2895: Trimethylamine N-oxide reductase, component TorA |
Gene: VIBHAR_01857: Trimethylamine N-oxide reductase, component TorA |
Gene: VP1162: Trimethylamine N-oxide reductase, component TorA |
Gene: VSAK1_04372: Trimethylamine N-oxide reductase, component TorA |
Gene: VS_2003: Trimethylamine N-oxide reductase, component TorA |
Gene: VF_A0299: Trimethylamine N-oxide reductase, component TorA |
Gene: VSAL_II0772: Trimethylamine N-oxide reductase, component TorA |
Gene: VAS14_04603: Trimethylamine N-oxide reductase, component TorA |
Gene: PBPRA1467: Trimethylamine N-oxide reductase, component TorA |
Trimethylamine N-oxide reductase, component TorA |
| CRON 4. | |||||||||||
| dmsA |
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Gene: VIBHAR_02507: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Gene: VP1447: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
*
Vibrio shilonii AK1 Site: position = -99 score = 4.71728 sequence = TAACCATTAAGTAGTA Gene: VSAK1_04530: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
|
*
Vibrio fischeri ES114 Site: position = -86 score = 4.67278 sequence = TACCCATTGAGAGGTA Gene: VF_A0082: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
|
2
Vibrio angustum S14 Gene: VAS14_10994: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) Gene: VAS14_04103: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
*
Photobacterium profundum SS9 Site: position = -93 score = 4.67794 sequence = TACCACTTAAAGAGTA Gene: PBPRB0330: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-) |
| dmsB |
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Gene: VIBHAR_02506: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: VP1448: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
Gene: VSAK1_04535: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
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Gene: VF_A0081: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
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2
Vibrio angustum S14 Gene: VAS14_10989: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) Gene: VAS14_04098: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
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Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-) |
| dmsC |
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Gene: VIBHAR_02505: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
Gene: VP1449: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
Gene: VSAK1_04540: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
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Gene: VF_A0080: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
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2
Vibrio angustum S14 Gene: VAS14_10984: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) Gene: VAS14_04093: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
Gene: PBPRB0329: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-) |
| dmsD |
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Gene: VIBHAR_02504: Dimethyl sulfoxide reductase chaperone protein dmsD |
Gene: VP1450: Dimethyl sulfoxide reductase chaperone protein dmsD |
Gene: VSAK1_04545: Dimethyl sulfoxide reductase chaperone protein dmsD |
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*
Vibrio fischeri ES114 Site: position = -265 score = 4.49592 sequence = TACCTCTCAATGGGTA Gene: VF_A0083: Dimethyl sulfoxide reductase chaperone protein dmsD |
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*
Photobacterium profundum SS9 Site: position = -286 score = 4.51973 sequence = TACTCTTTAAGTGGTA Gene: PBPRB0331: Dimethyl sulfoxide reductase chaperone protein dmsD |
Dimethyl sulfoxide reductase chaperone protein dmsD |
| dmsX |
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Gene: VIBHAR_02503: Predicted ferredoxin |
Gene: VP1451: Predicted ferredoxin |
Gene: VSAK1_04550: Predicted ferredoxin |
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Gene: VF_A0084: Predicted ferredoxin |
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Gene: VAS14_04108: Predicted ferredoxin |
Gene: PBPRB0332: Predicted ferredoxin |
Predicted ferredoxin |
| CRON 5. | |||||||||||
| pckA |
Gene: VC2738: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VV1_0881: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VIBHAR_00597: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VP0129: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VSAK1_13343: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VS_0131: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Vibrio fischeri ES114 Site: position = -125 score = 4.79481 sequence = TACCACTTTATGGTTA Gene: VF_2478: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Vibrio salmonicida LFI1238 Site: position = -132 score = 4.79481 sequence = TACCACTTTATGGTTA Gene: VSAL_I2928: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Gene: VAS14_23029: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
*
Photobacterium profundum SS9 Site: position = -99 score = 4.73584 sequence = TACCCCTTTAGGGTTG Gene: PBPRA3485: Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) |
| CRON 6. | |||||||||||
| nrtC |
|
*
Vibrio vulnificus CMCP6 Site: position = -155 score = 4.86985 sequence = TACTACTTTGGGGGTA Gene: VV20393: Nitrate ABC transporter, substrate-binding protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -276 score = 4.88005 sequence = TACCACTTTGGGGTTA Gene: VIBHAR_05588: Nitrate ABC transporter, substrate-binding protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -260 score = 4.50149 sequence = TACTACTTTGGAGTTA Gene: VPA1058: Nitrate ABC transporter, substrate-binding protein |
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Gene: VAS14_10334: Nitrate ABC transporter, substrate-binding protein |
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Nitrate ABC transporter, substrate-binding protein |
| nrtB |
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Gene: VV20392: Nitrate ABC transporter, permease protein |
Gene: VIBHAR_05589: Nitrate ABC transporter, permease protein |
Gene: VPA1057: Nitrate ABC transporter, permease protein |
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Gene: VAS14_10339: Nitrate ABC transporter, permease protein |
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Nitrate ABC transporter, permease protein |
| nrtD |
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Gene: VV20391: Nitrate ABC transporter, ATP-binding protein |
Gene: VIBHAR_05590: Nitrate ABC transporter, ATP-binding protein |
Gene: VPA1056: Nitrate ABC transporter, ATP-binding protein |
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Gene: VAS14_10344: Nitrate ABC transporter, ATP-binding protein |
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Nitrate ABC transporter, ATP-binding protein |
| nirB4 |
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Gene: VV20390: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: VIBHAR_05591: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: VPA1055: Nitrite reductase large subunit (EC 1.7.1.4) |
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Gene: VAS14_10349: Nitrite reductase large subunit (EC 1.7.1.4) |
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Nitrite reductase large subunit (EC 1.7.1.4) |
| nirD4 |
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Gene: VV20389: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: VIBHAR_05592: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: VPA1054: Nitrite reductase large subunit (EC 1.7.1.4) |
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Gene: VAS14_10354: Nitrite reductase large subunit (EC 1.7.1.4) |
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Nitrite reductase large subunit (EC 1.7.1.4) |
| CRON 7. | |||||||||||
| nirB |
|
*
Vibrio vulnificus CMCP6 Site: position = -18 score = 4.67024 sequence = TAACCCTTAGGAAGTA Site: position = -106 score = 4.13577 sequence = TACCCCTTTAGGGTAG Gene: VV20370: Nitrite reductase large subunit (EC 1.7.1.4) |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -18 score = 4.67024 sequence = TAACCCTTAGGAAGTA Site: position = -108 score = 4.13577 sequence = TACCCCTTTAGGGTAG Gene: VPA0987: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Vibrio shilonii AK1 Site: position = -108 score = 3.99295 sequence = TACCACTTTAGAGTAG Site: position = -18 score = 4.39492 sequence = TAACACTTAGGTATTA Gene: VSAK1_05765: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Vibrio splendidus LGP32 Site: position = -109 score = 4.13577 sequence = TACCCCTTTAGGGTAG Gene: VS_II0668: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Vibrio fischeri ES114 Site: position = -115 score = 4.68903 sequence = TACCACCTTAGAGCTA Gene: VF_0776: Nitrite reductase large subunit (EC 1.7.1.4) |
Gene: VSAL_I0798: Nitrite reductase large subunit (EC 1.7.1.4) |
|
*
Photobacterium profundum SS9 Site: position = -106 score = 5.06173 sequence = TACCCCTTTAGGGCTA Gene: PBPRA1428: Nitrite reductase large subunit (EC 1.7.1.4) |
Nitrite reductase large subunit (EC 1.7.1.4) |
| nirD |
|
Gene: VV20369: Nitrite reductase small subunit (EC 1.7.1.4) |
|
Gene: VPA0986: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: VSAK1_05770: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: VS_II0669: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: VF_0775: Nitrite reductase small subunit (EC 1.7.1.4) |
Gene: VSAL_I0797: Nitrite reductase small subunit (EC 1.7.1.4) |
|
Gene: PBPRA1427: Nitrite reductase small subunit (EC 1.7.1.4) |
Nitrite reductase small subunit (EC 1.7.1.4) |
| nirC |
|
Gene: VV20368: Nitrite transporter, FNT family |
|
Gene: VPA0985: Nitrite transporter, FNT family |
Gene: VSAK1_05775: Nitrite transporter, FNT family |
Gene: VS_II0670: Nitrite transporter, FNT family |
Gene: VF_0774: Nitrite transporter, FNT family |
Gene: VSAL_I0796: Nitrite transporter, FNT family |
|
Gene: PBPRA1426: Nitrite transporter, FNT family |
Nitrite transporter, FNT family |
| cysG |
|
Gene: VV20367: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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Gene: VPA0984: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: VSAK1_05780: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: VS_II0671: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: VF_0773: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Gene: VSAL_I0795: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|
Gene: PBPRA1425: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
| CRON 8. | |||||||||||
| frdA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -133 score = 4.73989 sequence = TACCACTTAATGGGTG Gene: VC2656: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: VV1_1269: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: VIBHAR_00131: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: VP2840: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: VSAK1_11298: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Vibrio splendidus LGP32 Site: position = -141 score = 4.65883 sequence = TACCACTTAAGGCTTA Gene: VS_0248: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Vibrio fischeri ES114 Site: position = -194 score = 4.47807 sequence = TGCCCCATTAGTGGTA Gene: VF_2334: Fumarate reductase subunit A (EC 1.3.5.4) |
*
Vibrio salmonicida LFI1238 Site: position = -152 score = 4.5787 sequence = CACCCCATTAGTGGTA Gene: VSAL_I2788: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: VAS14_18896: Fumarate reductase subunit A (EC 1.3.5.4) |
Gene: PBPRA3378: Fumarate reductase subunit A (EC 1.3.5.4) |
Fumarate reductase subunit A (EC 1.3.5.4) |
| frdB |
Gene: VC2657: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VV1_1268: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VIBHAR_00132: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VP2841: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VSAK1_11293: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VS_0247: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VF_2335: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VSAL_I2789: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: VAS14_18901: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Gene: PBPRA3379: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
| frdC |
Gene: VC2658: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VV1_1267: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VIBHAR_00133: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VP2842: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VSAK1_11288: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VS_0246: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VF_2336: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VSAL_I2790: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: VAS14_18906: Fumarate reductase subunit C (EC 1.3.5.4) |
Gene: PBPRA3380: Fumarate reductase subunit C (EC 1.3.5.4) |
Fumarate reductase subunit C (EC 1.3.5.4) |
| frdD |
Gene: VC2659: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VV1_1266: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VIBHAR_00134: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VP2843: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VSAK1_11283: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VS_0245: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VF_2337: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VSAL_I2791: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: VAS14_18911: Fumarate reductase subunit D (EC 1.3.5.4) |
Gene: PBPRA3381: Fumarate reductase subunit D (EC 1.3.5.4) |
Fumarate reductase subunit D (EC 1.3.5.4) |
| CRON 9. | |||||||||||
| adhB |
|
Gene: VV20019: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -112 score = 5.10139 sequence = TACCTCTAAGGGGGTA Gene: VIBHAR_05412: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -113 score = 5.09782 sequence = TACCCCTAAATGGGTA Gene: VPA0566: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*2
Vibrio shilonii AK1 Site: position = -105 score = 4.76903 sequence = CACCTCTAAAGTGGTA Gene: VSAK1_21639: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) Gene: VSAK1_20899: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
*
Vibrio splendidus LGP32 Site: position = -110 score = 4.41094 sequence = TAATCACAAAGTGGTA Gene: VS_II0445: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: VF_1188: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: VSAL_I1788: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: VAS14_18244: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Gene: PBPRA2519: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
| CRON 10. | |||||||||||
| nirB3 |
|
|
|
|
*
Vibrio shilonii AK1 Site: position = -144 score = 5.30251 sequence = TACCACTTTAGTGGTA Gene: VSAK1_03730: Nitrite reductase large subunit (EC 1.7.1.4) |
*
Vibrio splendidus LGP32 Site: position = -239 score = 5.34406 sequence = TACCCCTAAAGTGGTA Gene: VS_II1026: Nitrite reductase large subunit (EC 1.7.1.4) |
|
|
|
*
Photobacterium profundum SS9 Site: position = -205 score = 4.82857 sequence = TAACCCTTTAGTAGTA Gene: PBPRA2525: Nitrite reductase large subunit (EC 1.7.1.4) |
Nitrite reductase large subunit (EC 1.7.1.4) |
| CRON 11. | |||||||||||
| narQ |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -21 score = 4.4005 sequence = TAGCCCTAAAGAGGTG Site: position = -95 score = 5.09843 sequence = TACCTCTTAGGAGGTA Gene: VCA0675: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio vulnificus CMCP6 Site: position = -189 score = 5.287 sequence = TACCCCTTAGGGGGTA Gene: VV20719: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -188 score = 5.09843 sequence = TACCTCTTAGGAGGTA Gene: VIBHAR_05380: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -140 score = 5.09843 sequence = TACCTCTTAGGAGGTA Gene: VPA1196: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio shilonii AK1 Site: position = -133 score = 4.94386 sequence = TACCTCTTAGGGGTTA Gene: VSAK1_22414: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio splendidus LGP32 Site: position = -145 score = 5.1713 sequence = TACCCCTTAAGGGCTA Gene: VS_II0601: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio fischeri ES114 Site: position = -116 score = 4.67392 sequence = TACCCCATAATGGTTA Gene: VF_1908: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio salmonicida LFI1238 Site: position = -117 score = 4.59225 sequence = TACCTCATAATGGTTA Gene: VSAL_I2369: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Vibrio angustum S14 Site: position = -194 score = 5.26644 sequence = TACCCCATAAGGGGTA Gene: VAS14_16841: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
*
Photobacterium profundum SS9 Site: position = -168 score = 4.61099 sequence = TACCCACTTAGGGCTA Site: position = -65 score = 4.26514 sequence = TAATACTAAAGTATTA Gene: PBPRA0850: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) |
| narP |
|
Gene: VV20718: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VIBHAR_05381: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VPA1195: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VSAK1_22419: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VS_II0602: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VF_1909: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VSAL_I2370: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: VAS14_16836: Nitrate/nitrite response regulator protein NarP, LuxR family |
Gene: PBPRA0849: Nitrate/nitrite response regulator protein NarP, LuxR family |
Nitrate/nitrite response regulator protein NarP, LuxR family |
| CRON 12. | |||||||||||
| fnr |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -61 score = 3.92279 sequence = CTACCCTTTAGGGTTA Gene: VC1434: Fumarate and nitrate reduction regulatory protein, Crp family |
2
Vibrio vulnificus CMCP6 Gene: VV1_2610: Fumarate and nitrate reduction regulatory protein, Crp family Gene: VV1_2611: Fumarate and nitrate reduction regulatory protein, Crp family |
Gene: VIBHAR_02295: Fumarate and nitrate reduction regulatory protein, Crp family |
Gene: VP1536: Fumarate and nitrate reduction regulatory protein, Crp family |
*
Vibrio shilonii AK1 Site: position = -61 score = 4.29382 sequence = CTACCCTTAAGGGGTA Gene: VSAK1_11585: Fumarate and nitrate reduction regulatory protein, Crp family |
Gene: VS_1467: Fumarate and nitrate reduction regulatory protein, Crp family |
*
Vibrio fischeri ES114 Site: position = -62 score = 4.24905 sequence = TACCACTTTAGTGCGA Gene: VF_1308: Fumarate and nitrate reduction regulatory protein, Crp family |
*
Vibrio salmonicida LFI1238 Site: position = -63 score = 4.30071 sequence = TACCACTTTAGGACTG Gene: VSAL_I1571: Fumarate and nitrate reduction regulatory protein, Crp family |
Gene: VAS14_02788: Fumarate and nitrate reduction regulatory protein, Crp family |
Gene: PBPRA1838: Fumarate and nitrate reduction regulatory protein, Crp family |
Fumarate and nitrate reduction regulatory protein, Crp family |
| CRON 13. | |||||||||||
| moaA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -232 score = 4.84089 sequence = TACCCATTTAGGGCTA Gene: VC1024: Molybdenum cofactor biosynthesis protein MoaA |
*
Vibrio vulnificus CMCP6 Site: position = -256 score = 4.37584 sequence = TACTCACAAGGTGGTA Gene: VV1_3088: Molybdenum cofactor biosynthesis protein MoaA |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -235 score = 4.39328 sequence = TACTCACTAAGCGGTA Gene: VIBHAR_02954: Molybdenum cofactor biosynthesis protein MoaA |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -218 score = 4.39328 sequence = TACTCACTAAGCGGTA Gene: VP2096: Molybdenum cofactor biosynthesis protein MoaA |
*
Vibrio shilonii AK1 Site: position = -293 score = 4.30777 sequence = TACTTCTTTTGAGTTA Gene: VSAK1_03680: Molybdenum cofactor biosynthesis protein MoaA |
Gene: VS_0985: Molybdenum cofactor biosynthesis protein MoaA |
*
Vibrio fischeri ES114 Site: position = -256 score = 4.5347 sequence = TACCACTTTATAGATA Gene: VF_0940: Molybdenum cofactor biosynthesis protein MoaA |
Gene: VSAL_I1877: Molybdenum cofactor biosynthesis protein MoaA |
Gene: VAS14_05523: Molybdenum cofactor biosynthesis protein MoaA |
Gene: PBPRA1124: Molybdenum cofactor biosynthesis protein MoaA |
Molybdenum cofactor biosynthesis protein MoaA |
| moaB |
Gene: VC1025: Molybdenum cofactor biosynthesis protein MoaB |
Gene: VV1_3087: Molybdenum cofactor biosynthesis protein MoaB |
Gene: VIBHAR_02953: Molybdenum cofactor biosynthesis protein MoaB |
Gene: VP2095: Molybdenum cofactor biosynthesis protein MoaB |
Gene: VSAK1_03685: Molybdenum cofactor biosynthesis protein MoaB |
Gene: VS_0986: Molybdenum cofactor biosynthesis protein MoaB |
|
|
|
|
Molybdenum cofactor biosynthesis protein MoaB |
| moaC |
Gene: VC1026: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VV1_3086: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VIBHAR_02952: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VP2094: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VSAK1_03690: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VS_0987: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VF_0941: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VSAL_I1878: Molybdenum cofactor biosynthesis protein MoaC |
Gene: VAS14_05518: Molybdenum cofactor biosynthesis protein MoaC |
Gene: PBPRA1125: Molybdenum cofactor biosynthesis protein MoaC |
Molybdenum cofactor biosynthesis protein MoaC |
| moaD |
Gene: VC1027: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VV1_3085: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VIBHAR_02951: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VP2093: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VSAK1_03695: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VS_0988: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VF_0942: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VSAL_I1879: Molybdenum cofactor biosynthesis protein MoaD |
Gene: VAS14_05513: Molybdenum cofactor biosynthesis protein MoaD |
Gene: PBPRA1126: Molybdenum cofactor biosynthesis protein MoaD |
Molybdenum cofactor biosynthesis protein MoaD |
| moaE |
Gene: VC1028: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VV1_3084: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VIBHAR_02950: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VP2092: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VSAK1_03700: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VS_0989: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VF_0943: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VSAL_I1880: Molybdenum cofactor biosynthesis protein MoaE |
Gene: VAS14_05508: Molybdenum cofactor biosynthesis protein MoaE |
Gene: PBPRA1127: Molybdenum cofactor biosynthesis protein MoaE |
Molybdenum cofactor biosynthesis protein MoaE |
| CRON 14. | |||||||||||
| ccmA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -144 score = 4.42428 sequence = TAACTACAAAGGGTTA Gene: VC2057: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio vulnificus CMCP6 Site: position = -146 score = 4.32605 sequence = TCACTCTATAGAGGTA Gene: VV1_1961: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -146 score = 3.89761 sequence = TAATCACTTATGGTTA Gene: VIBHAR_03135: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -146 score = 3.88445 sequence = TAGCCACTTATGGTTA Gene: VP2223: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio shilonii AK1 Site: position = -145 score = 5.05627 sequence = TACCACTTTATGGGTA Gene: VSAK1_03174: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
Gene: VS_0849: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio fischeri ES114 Site: position = -192 score = 4.81165 sequence = TACCTACAAAGTGGTA Gene: VF_1824: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Vibrio salmonicida LFI1238 Site: position = -190 score = 4.8774 sequence = TACCCATAAGGTGGTA Gene: VSAL_I2281: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
Gene: VAS14_17256: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
*
Photobacterium profundum SS9 Site: position = -156 score = 3.98127 sequence = TTTTACTATAGGGGTA Gene: PBPRA0948: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA |
| ccmB |
Gene: VC2056: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VV1_1962: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VIBHAR_03134: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VP2222: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VSAK1_03179: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VS_0850: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VF_1823: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VSAL_I2280: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: VAS14_17261: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
Gene: PBPRA0949: ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
ABC transporter involved in cytochrome c biogenesis, CcmB subunit |
| ccmC |
Gene: VC2055: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VV1_1963: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VIBHAR_03133: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VP2221: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VSAK1_03184: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VS_0852: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VF_1822: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VSAL_I2279: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: VAS14_17266: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Gene: PBPRA0950: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE |
| ccmD |
Gene: VC2054: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VV1_1964: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VIBHAR_03132: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VP2220: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VSAK1_03189: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VS_0853: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VF_1821: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VSAL_I2278: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
Gene: VAS14_17271: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
|
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE |
| ccmE |
Gene: VC2053: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VV1_1965: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VIBHAR_03131: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VP2219: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VSAK1_03194: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VS_0854: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VF_1820: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VSAL_I2277: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: VAS14_17276: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Gene: PBPRA0951: Cytochrome c-type biogenesis protein CcmE, heme chaperone |
Cytochrome c-type biogenesis protein CcmE, heme chaperone |
| ccmF |
Gene: VC2052: Cytochrome c heme lyase, subunit CcmF |
Gene: VV1_1966: Cytochrome c heme lyase, subunit CcmF |
Gene: VIBHAR_03130: Cytochrome c heme lyase, subunit CcmF |
Gene: VP2218: Cytochrome c heme lyase, subunit CcmF |
Gene: VSAK1_03199: Cytochrome c heme lyase, subunit CcmF |
Gene: VS_0855: Cytochrome c heme lyase, subunit CcmF |
Gene: VF_1819: Cytochrome c heme lyase, subunit CcmF |
Gene: VSAL_I2276: Cytochrome c heme lyase, subunit CcmF |
Gene: VAS14_17281: Cytochrome c heme lyase, subunit CcmF |
Gene: PBPRA0952: Cytochrome c heme lyase, subunit CcmF |
Cytochrome c heme lyase, subunit CcmF |
| ccmG |
Gene: VC2051: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VV1_1967: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VIBHAR_03129: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VP2217: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VSAK1_03204: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VS_0856: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VF_1818: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VSAL_I2275: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: VAS14_17286: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Gene: PBPRA0953: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase |
| ccmH |
|
2
Vibrio vulnificus CMCP6 Gene: VV1_1968: Cytochrome c heme lyase, subunit CcmH Gene: VV1_1969: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03127: Cytochrome c heme lyase, subunit CcmH Gene: VIBHAR_03128: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VP2216: Cytochrome c heme lyase, subunit CcmH Gene: VP2215: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio shilonii AK1 Gene: VSAK1_03209: Cytochrome c heme lyase, subunit CcmH Gene: VSAK1_03214: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio splendidus LGP32 Gene: VS_0858: Cytochrome c heme lyase, subunit CcmH Gene: VS_0857: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio fischeri ES114 Gene: VF_1817: Cytochrome c heme lyase, subunit CcmH Gene: VF_1816: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio salmonicida LFI1238 Gene: VSAL_I2274: Cytochrome c heme lyase, subunit CcmH Gene: VSAL_I2273: Cytochrome c heme lyase, subunit CcmH |
2
Vibrio angustum S14 Gene: VAS14_17291: Cytochrome c heme lyase, subunit CcmH Gene: VAS14_17296: Cytochrome c heme lyase, subunit CcmH |
2
Photobacterium profundum SS9 Gene: PBPRA0954: Cytochrome c heme lyase, subunit CcmH Gene: PBPRA0955: Cytochrome c heme lyase, subunit CcmH |
Cytochrome c heme lyase, subunit CcmH |
| CRON 15. | |||||||||||
| nrfB |
|
*
Vibrio vulnificus CMCP6 Site: position = -203 score = 3.72691 sequence = TACTACTAAAGAGTAG Site: position = -305 score = 5.42888 sequence = TACCCCTAAAGGGGTA Gene: VV1_3034: Cytochrome c-type protein NrfB precursor |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -175 score = 3.78978 sequence = TACCTCTTATGAATAA Site: position = -277 score = 5.34721 sequence = TACCTCTAAAGGGGTA Gene: VIBHAR_02726: Cytochrome c-type protein NrfB precursor |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -197 score = 3.93775 sequence = TACCTCTTAGGAATAA Site: position = -301 score = 5.34406 sequence = TACCCCTAAAGTGGTA Gene: VP1928: Cytochrome c-type protein NrfB precursor |
*
Vibrio shilonii AK1 Site: position = -196 score = 4.8477 sequence = TACCTCTAAAGTGATA Site: position = -304 score = 5.21816 sequence = TAACCCTAAAGGGGTA Gene: VSAK1_05595: Cytochrome c-type protein NrfB precursor |
*
Vibrio splendidus LGP32 Site: position = -305 score = 5.34406 sequence = TACCCCTAAAGTGGTA Site: position = -163 score = 4.74746 sequence = TACCTAATTAGAGGTA Gene: VS_1932: Cytochrome c-type protein NrfB precursor |
*
Vibrio fischeri ES114 Site: position = -294 score = 5.10486 sequence = TACCTCTTAAGTGTTA Site: position = -206 score = 4.33189 sequence = TATCACAAAAGGAGTA Gene: VF_1553: Cytochrome c-type protein NrfB precursor |
*
Vibrio salmonicida LFI1238 Site: position = -229 score = 4.54623 sequence = TATCACAAAAGTGGTA Site: position = -316 score = 4.74752 sequence = TACCACTAAAGTATTA Gene: VSAL_I1998: Cytochrome c-type protein NrfB precursor |
|
*
Photobacterium profundum SS9 Site: position = -428 score = 4.80798 sequence = TACCCCTTATTGGGTA Site: position = -304 score = 4.63124 sequence = TGCTACTTAAGGGGTA Gene: PBPRA1259: Cytochrome c-type protein NrfB precursor |
Cytochrome c-type protein NrfB precursor |
| nfrC |
|
Gene: VV1_3033: Nitrite reductase, Fe-S center subunit |
2
Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_02725: Nitrite reductase, Fe-S center subunit Gene: VIBHAR_02724: Nitrite reductase, Fe-S center subunit |
Gene: VP1927: Nitrite reductase, Fe-S center subunit |
Gene: VSAK1_05590: Nitrite reductase, Fe-S center subunit |
Gene: VS_1931: Nitrite reductase, Fe-S center subunit |
Gene: VF_1552: Nitrite reductase, Fe-S center subunit |
Gene: VSAL_I1999: Nitrite reductase, Fe-S center subunit |
|
Gene: PBPRA1260: Nitrite reductase, Fe-S center subunit |
Nitrite reductase, Fe-S center subunit |
| nrfD |
|
Gene: VV1_3032: Nitrite reductase, NrfD component |
Gene: VIBHAR_02723: Nitrite reductase, NrfD component |
Gene: VP1926: Nitrite reductase, NrfD component |
Gene: VSAK1_05585: Nitrite reductase, NrfD component |
Gene: VS_1930: Nitrite reductase, NrfD component |
Gene: VF_1551: Nitrite reductase, NrfD component |
Gene: VSAL_I2000: Nitrite reductase, NrfD component |
|
Gene: PBPRA1261: Nitrite reductase, NrfD component |
Nitrite reductase, NrfD component |
| nrfE |
|
Gene: VV1_3031: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VIBHAR_02722: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VP1925: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VSAK1_05580: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VS_1928: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VF_1550: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Gene: VSAL_I2001: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
|
Gene: PBPRA1262: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE |
| nrfX |
|
Gene: VV1_3030: Nitrite reductase, predicted component NrfX |
Gene: VIBHAR_02721: Nitrite reductase, predicted component NrfX |
Gene: VP1924: Nitrite reductase, predicted component NrfX |
|
Gene: VS_1927: Nitrite reductase, predicted component NrfX |
Gene: VF_1549: Nitrite reductase, predicted component NrfX |
Gene: VSAL_I2002: Nitrite reductase, predicted component NrfX |
|
Gene: PBPRA1263: Nitrite reductase, predicted component NrfX |
Nitrite reductase, predicted component NrfX |
| nrfF |
|
|
Gene: VIBHAR_02720: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Gene: VP1923: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Gene: VSAK1_05575: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Gene: VS_1926: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Gene: VF_1548: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Gene: VSAL_I2003: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
|
Gene: PBPRA1264: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
| VS_1929 |
|
|
|
|
|
Gene: VS_1929: Hypothetical protein |
|
|
|
|
Hypothetical protein |
| CRON 16. | |||||||||||
| pflB |
Gene: VC1866: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio vulnificus CMCP6 Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VV1_2098: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VIBHAR_01546: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VP0994: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio shilonii AK1 Site: position = -111 score = 4.37982 sequence = TAACCCTAAGTGGTTA Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VSAK1_00285: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio splendidus LGP32 Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VS_1052: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio fischeri ES114 Site: position = -269 score = 4.62073 sequence = TAATACTTATGGGGTA Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VF_1590: Pyruvate formate-lyase (EC 2.3.1.54) |
*
Vibrio salmonicida LFI1238 Site: position = -24 score = 3.95967 sequence = TTCTACTAAAAAGGTA Gene: VSAL_I1955: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VAS14_06513: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: PBPRA2750: Pyruvate formate-lyase (EC 2.3.1.54) |
Pyruvate formate-lyase (EC 2.3.1.54) |
| CRON 17. | |||||||||||
| torY |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -46 score = 5.1625 sequence = TACCCCAAAAGGGGTA Gene: VC1951: Biotin sulfoxide reductase, cytochrome c-type |
|
*
Vibrio harveyi ATCC BAA-1116 Site: position = -61 score = 5.0144 sequence = TACTACTAAAGAGGTA Gene: VIBHAR_06847: Biotin sulfoxide reductase, cytochrome c-type |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -60 score = 4.5125 sequence = TACCTACAAAGTAGTA Gene: VPA0127: Biotin sulfoxide reductase, cytochrome c-type |
*
Vibrio shilonii AK1 Site: position = -61 score = 4.82214 sequence = TACTACTAAAGGAGTA Gene: VSAK1_18027: Biotin sulfoxide reductase, cytochrome c-type |
|
*
Vibrio fischeri ES114 Site: position = -66 score = 4.90345 sequence = TAACCCCAAAGTGGTA Gene: VF_A0189: Biotin sulfoxide reductase, cytochrome c-type |
|
|
|
Biotin sulfoxide reductase, cytochrome c-type |
| torZ |
Gene: VC1950: Biotin sulfoxide reductase |
|
Gene: VIBHAR_06846: Biotin sulfoxide reductase |
Gene: VPA0128: Biotin sulfoxide reductase |
Gene: VSAK1_18032: Biotin sulfoxide reductase |
|
Gene: VF_A0188: Biotin sulfoxide reductase |
|
|
|
Biotin sulfoxide reductase |
| CRON 18. | |||||||||||
| napF |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -152 score = 4.4867 sequence = CACCTCTTTAGGGCTA Site: position = -78 score = 5.11436 sequence = TACCTCCTAAGAGGTA Gene: VCA0676: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
|
*
Vibrio harveyi ATCC BAA-1116 Site: position = -122 score = 5.11436 sequence = TACCTCCTAAGAGGTA Gene: VIBHAR_05379: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -123 score = 5.11436 sequence = TACCTCCTAAGAGGTA Gene: VPA1197: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio shilonii AK1 Site: position = -123 score = 4.98531 sequence = TAACCCCTAAGAGGTA Gene: VSAK1_22409: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio splendidus LGP32 Site: position = -124 score = 5.03728 sequence = TAGCCCTTAAGGGGTA Gene: VS_II0600: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio fischeri ES114 Site: position = -87 score = 4.70747 sequence = TAACCATTATGGGGTA Gene: VF_1907: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio salmonicida LFI1238 Site: position = -87 score = 4.60058 sequence = TAACCATTATGAGGTA Gene: VSAL_I2368: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Vibrio angustum S14 Site: position = -144 score = 5.13903 sequence = TACCCCTTATGGGGTA Gene: VAS14_16846: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
*
Photobacterium profundum SS9 Site: position = -164 score = 4.35647 sequence = TAGCCCTAAGTGGGTA Gene: PBPRA0851: Periplasmic nitrate reductase, ferredoxin-type protein NapF |
Periplasmic nitrate reductase, ferredoxin-type protein NapF |
| napD |
Gene: VCA0677: Periplasmic nitrate reductase component NapD |
*
Vibrio vulnificus CMCP6 Site: position = -628 score = 5.30292 sequence = TACCCCCTAAGGGGTA Gene: VV20720: Periplasmic nitrate reductase component NapD |
Gene: VIBHAR_05378: Periplasmic nitrate reductase component NapD |
Gene: VPA1198: Periplasmic nitrate reductase component NapD |
Gene: VSAK1_22404: Periplasmic nitrate reductase component NapD |
Gene: VS_II0599: Periplasmic nitrate reductase component NapD |
Gene: VF_1906: Periplasmic nitrate reductase component NapD |
Gene: VSAL_I2367: Periplasmic nitrate reductase component NapD |
Gene: VAS14_16851: Periplasmic nitrate reductase component NapD |
Gene: PBPRA0852: Periplasmic nitrate reductase component NapD |
Periplasmic nitrate reductase component NapD |
| napA |
Gene: VCA0678: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VV20721: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VIBHAR_05377: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VPA1199: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VSAK1_22399: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VS_II0598: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Gene: VF_1905: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
|
Gene: VAS14_16856: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
2
Photobacterium profundum SS9 Gene: PBPRA0853: Periplasmic nitrate reductase precursor (EC 1.7.99.4) Gene: PBPRA2030: Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
Periplasmic nitrate reductase precursor (EC 1.7.99.4) |
| napB |
Gene: VCA0679: Nitrate reductase cytochrome c550-type subunit |
Gene: VV20722: Nitrate reductase cytochrome c550-type subunit |
Gene: VIBHAR_05376: Nitrate reductase cytochrome c550-type subunit |
Gene: VPA1200: Nitrate reductase cytochrome c550-type subunit |
Gene: VSAK1_22394: Nitrate reductase cytochrome c550-type subunit |
Gene: VS_II0597: Nitrate reductase cytochrome c550-type subunit |
Gene: VF_1904: Nitrate reductase cytochrome c550-type subunit |
Gene: VSAL_I2365: Nitrate reductase cytochrome c550-type subunit |
Gene: VAS14_16861: Nitrate reductase cytochrome c550-type subunit |
2
Photobacterium profundum SS9 Gene: PBPRA0854: Nitrate reductase cytochrome c550-type subunit Gene: PBPRA2029: Nitrate reductase cytochrome c550-type subunit |
Nitrate reductase cytochrome c550-type subunit |
| napC |
Gene: VCA0680: Cytochrome c-type protein NapC |
Gene: VV20723: Cytochrome c-type protein NapC |
Gene: VIBHAR_05375: Cytochrome c-type protein NapC |
Gene: VPA1201: Cytochrome c-type protein NapC |
Gene: VSAK1_22389: Cytochrome c-type protein NapC |
Gene: VS_II0596: Cytochrome c-type protein NapC |
Gene: VF_1903: Cytochrome c-type protein NapC |
Gene: VSAL_I2364: Cytochrome c-type protein NapC |
Gene: VAS14_16866: Cytochrome c-type protein NapC |
2
Photobacterium profundum SS9 Gene: PBPRA0855: Cytochrome c-type protein NapC Gene: PBPRA2028: Cytochrome c-type protein NapC |
Cytochrome c-type protein NapC |
| CRON 19. | |||||||||||
| nrfA |
|
*
Vibrio vulnificus CMCP6 Site: position = -192 score = 5.42325 sequence = TACCCCTTTAGGGGTA Gene: VV1_3035: Nitrite reductase, cytochrome c(552) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -207 score = 5.31636 sequence = TACCCCTTTAGAGGTA Gene: VIBHAR_02727: Nitrite reductase, cytochrome c(552) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -189 score = 5.38733 sequence = TACCACTTTAGGGGTA Site: position = -293 score = 4.09705 sequence = TTATTCCTAAGAGGTA Gene: VP1929: Nitrite reductase, cytochrome c(552) |
*
Vibrio shilonii AK1 Site: position = -206 score = 5.16179 sequence = TACCCCTTTAGGGTTA Gene: VSAK1_05600: Nitrite reductase, cytochrome c(552) |
*
Vibrio splendidus LGP32 Site: position = -235 score = 5.38733 sequence = TACCACTTTAGGGGTA Gene: VS_1933: Nitrite reductase, cytochrome c(552) |
*
Vibrio fischeri ES114 Site: position = -101 score = 4.73612 sequence = TACCTCTTAATTAGTA Site: position = -279 score = 4.2583 sequence = TACTCCTTTTGTGATA Site: position = -191 score = 5.17928 sequence = TAACACTTAAGAGGTA Gene: VF_1554: Nitrite reductase, cytochrome c(552) |
*
Vibrio salmonicida LFI1238 Site: position = -279 score = 4.49404 sequence = TACCACTTTTGTGATA Site: position = -192 score = 4.82013 sequence = TAATACTTTAGTGGTA Gene: VSAL_I1997: Nitrite reductase, cytochrome c(552) |
|
*
Photobacterium profundum SS9 Site: position = -209 score = 5.04559 sequence = TACCCAATAAGGGGTA Gene: PBPRA1258: Nitrite reductase, cytochrome c(552) |
Nitrite reductase, cytochrome c(552) |
| CRON 20. | |||||||||||
| aspA |
Gene: VC2698: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Vibrio vulnificus CMCP6 Site: position = -225 score = 5.05489 sequence = TACCCCTTTAGAGTTA Gene: VV1_1249: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -225 score = 4.9016 sequence = TACCACCAAAGGGTTA Gene: VIBHAR_00154: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -225 score = 4.71667 sequence = TACCCACAAAGGGTTA Gene: VP2863: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: VSAK1_26680: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: VS_2921: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Vibrio fischeri ES114 Site: position = -140 score = 4.86012 sequence = TACCACTAAAGAGGTG Gene: VF_2353: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Vibrio salmonicida LFI1238 Site: position = -141 score = 4.89604 sequence = TACCCCTAAAGAGGTG Gene: VSAL_I2806: Aspartate ammonia-lyase (EC 4.3.1.1) |
Gene: VAS14_18961: Aspartate ammonia-lyase (EC 4.3.1.1) |
*
Photobacterium profundum SS9 Site: position = -143 score = 4.36694 sequence = TACCACTAAAGGGGAG Gene: PBPRA3391: Aspartate ammonia-lyase (EC 4.3.1.1) |
Aspartate ammonia-lyase (EC 4.3.1.1) |
| dcuA |
Gene: VC2699: C4-dicarboxylate transporter |
Gene: VV1_1248: C4-dicarboxylate transporter |
Gene: VIBHAR_00155: C4-dicarboxylate transporter |
Gene: VP2864: C4-dicarboxylate transporter |
Gene: VSAK1_26675: C4-dicarboxylate transporter |
Gene: VS_2922: C4-dicarboxylate transporter |
Gene: VF_2354: C4-dicarboxylate transporter |
|
Gene: VAS14_18966: C4-dicarboxylate transporter |
Gene: PBPRA3392: C4-dicarboxylate transporter |
C4-dicarboxylate transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |