Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VPA1195
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 44
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -108
Score: 4.1
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.7
Sequence: TAACCCTTAGGAAGTA
Locus tag: VPA0987
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VPA0986
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VPA0985
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VPA0984
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
VPA0987
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
VPA0986
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
VPA0985
nirC
Nitrite transporter, FNT family
VPA0984
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -301
Score: 5.3
Sequence: TACCCCTAAAGTGGTA
Position: -197
Score: 3.9
Sequence: TACCTCTTAGGAATAA
Locus tag: VP1928
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VP1927
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VP1926
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VP1925
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VP1924
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VP1923
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
VP1928
nrfB
Cytochrome c-type protein NrfB precursor
VP1927
nfrC
Nitrite reductase, Fe-S center subunit
VP1926
nrfD
Nitrite reductase, NrfD component
VP1925
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
VP1924
nrfX
Nitrite reductase, predicted component NrfX
VP1923
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
Position: -192
Score: 4.3
Sequence: CACTACTTTGGTGGTA
Locus tag: VP2121
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VP2121
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -113
Score: 5.1
Sequence: TACCCCTAAATGGGTA
Locus tag: VPA0566
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
VPA0566
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -123
Score: 5.1
Sequence: TACCTCCTAAGAGGTA
Locus tag: VPA1197
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VPA1198
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VPA1199
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VPA1200
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VPA1201
Name: napC
Funciton: Cytochrome c-type protein NapC
VPA1197
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
VPA1198
napD
Periplasmic nitrate reductase component NapD
VPA1199
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
VPA1200
napB
Nitrate reductase cytochrome c550-type subunit
VPA1201
napC
Cytochrome c-type protein NapC
Position: -225
Score: 4.7
Sequence: TACCCACAAAGGGTTA
Locus tag: VP2863
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VP2864
Name: dcuA
Funciton: C4-dicarboxylate transporter
VP2863
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
VP2864
dcuA
C4-dicarboxylate transporter
Position: -218
Score: 4.4
Sequence: TACTCACTAAGCGGTA
Locus tag: VP2096
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VP2095
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VP2094
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VP2093
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VP2092
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
VP2096
moaA
Molybdenum cofactor biosynthesis protein MoaA
VP2095
moaB
Molybdenum cofactor biosynthesis protein MoaB
VP2094
moaC
Molybdenum cofactor biosynthesis protein MoaC
VP2093
moaD
Molybdenum cofactor biosynthesis protein MoaD
VP2092
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -260
Score: 4.5
Sequence: TACTACTTTGGAGTTA
Locus tag: VPA1058
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VPA1057
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VPA1056
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VPA1055
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VPA1054
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
VPA1058
nrtC
Nitrate ABC transporter, substrate-binding protein
VPA1057
nrtB
Nitrate ABC transporter, permease protein
VPA1056
nrtD
Nitrate ABC transporter, ATP-binding protein
VPA1055
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
VPA1054
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VP0994
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
VP0994
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -293
Score: 4.1
Sequence: TTATTCCTAAGAGGTA
Position: -189
Score: 5.4
Sequence: TACCACTTTAGGGGTA
Locus tag: VP1929
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
VP1929
nrfA
Nitrite reductase, cytochrome c(552)
Position: -140
Score: 5.1
Sequence: TACCTCTTAGGAGGTA
Locus tag: VPA1196
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VPA1195
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
VPA1196
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
VPA1195
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -60
Score: 4.5
Sequence: TACCTACAAAGTAGTA
Locus tag: VPA0127
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VPA0128
Name: torZ
Funciton: Biotin sulfoxide reductase
VPA0127
torY
Biotin sulfoxide reductase, cytochrome c-type
VPA0128
torZ
Biotin sulfoxide reductase
Position: -146
Score: 3.9
Sequence: TAGCCACTTATGGTTA
Locus tag: VP2223
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VP2222
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VP2221
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VP2220
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VP2219
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VP2218
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VP2217
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VP2216
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VP2215
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
VP2223
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
VP2222
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
VP2221
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
VP2220
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
VP2219
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
VP2218
ccmF
Cytochrome c heme lyase, subunit CcmF
VP2217
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
VP2216
ccmH
Cytochrome c heme lyase, subunit CcmH
VP2215
ccmH
Cytochrome c heme lyase, subunit CcmH
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