Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV20718
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 39
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -208
Score: 4.6
Sequence: CACCACTTTGGGGGTA
Locus tag: VV1_3111
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VV1_3111
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -628
Score: 5.3
Sequence: TACCCCCTAAGGGGTA
Locus tag: VV20720
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VV20721
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VV20722
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VV20723
Name: napC
Funciton: Cytochrome c-type protein NapC
VV20720
napD
Periplasmic nitrate reductase component NapD
VV20721
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
VV20722
napB
Nitrate reductase cytochrome c550-type subunit
VV20723
napC
Cytochrome c-type protein NapC
Position: -225
Score: 5.1
Sequence: TACCCCTTTAGAGTTA
Locus tag: VV1_1249
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VV1_1248
Name: dcuA
Funciton: C4-dicarboxylate transporter
VV1_1249
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
VV1_1248
dcuA
C4-dicarboxylate transporter
Position: -256
Score: 4.4
Sequence: TACTCACAAGGTGGTA
Locus tag: VV1_3088
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VV1_3087
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VV1_3086
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VV1_3085
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VV1_3084
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
VV1_3088
moaA
Molybdenum cofactor biosynthesis protein MoaA
VV1_3087
moaB
Molybdenum cofactor biosynthesis protein MoaB
VV1_3086
moaC
Molybdenum cofactor biosynthesis protein MoaC
VV1_3085
moaD
Molybdenum cofactor biosynthesis protein MoaD
VV1_3084
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -106
Score: 4.1
Sequence: TACCCCTTTAGGGTAG
Position: -18
Score: 4.7
Sequence: TAACCCTTAGGAAGTA
Locus tag: VV20370
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VV20369
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VV20368
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VV20367
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
VV20370
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
VV20369
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
VV20368
nirC
Nitrite transporter, FNT family
VV20367
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -305
Score: 5.4
Sequence: TACCCCTAAAGGGGTA
Position: -203
Score: 3.7
Sequence: TACTACTAAAGAGTAG
Locus tag: VV1_3034
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VV1_3033
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VV1_3032
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VV1_3031
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VV1_3030
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
VV1_3034
nrfB
Cytochrome c-type protein NrfB precursor
VV1_3033
nfrC
Nitrite reductase, Fe-S center subunit
VV1_3032
nrfD
Nitrite reductase, NrfD component
VV1_3031
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
VV1_3030
nrfX
Nitrite reductase, predicted component NrfX
Position: -155
Score: 4.9
Sequence: TACTACTTTGGGGGTA
Locus tag: VV20393
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VV20392
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VV20391
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VV20390
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VV20389
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
VV20393
nrtC
Nitrate ABC transporter, substrate-binding protein
VV20392
nrtB
Nitrate ABC transporter, permease protein
VV20391
nrtD
Nitrate ABC transporter, ATP-binding protein
VV20390
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
VV20389
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VV1_2098
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
VV1_2098
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -146
Score: 4.3
Sequence: TCACTCTATAGAGGTA
Locus tag: VV1_1961
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VV1_1962
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VV1_1963
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VV1_1964
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VV1_1965
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VV1_1966
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VV1_1967
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VV1_1968
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VV1_1969
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
VV1_1961
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
VV1_1962
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
VV1_1963
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
VV1_1964
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
VV1_1965
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
VV1_1966
ccmF
Cytochrome c heme lyase, subunit CcmF
VV1_1967
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
VV1_1968
ccmH
Cytochrome c heme lyase, subunit CcmH
VV1_1969
ccmH
Cytochrome c heme lyase, subunit CcmH
Position: -192
Score: 5.4
Sequence: TACCCCTTTAGGGGTA
Locus tag: VV1_3035
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
VV1_3035
nrfA
Nitrite reductase, cytochrome c(552)
Position: -189
Score: 5.3
Sequence: TACCCCTTAGGGGGTA
Locus tag: VV20719
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VV20718
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
VV20719
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
VV20718
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
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