Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing nrfD gene

Properties
Regulog: NarP - Vibrionales
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Built upon 135 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -428
Score: 4.80798
Sequence: TACCCCTTATTGGGTA
Position: -304
Score: 4.63124
Sequence: TGCTACTTAAGGGGTA
Locus tag: PBPRA1259
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: PBPRA1260
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: PBPRA1261
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: PBPRA1262
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: PBPRA1263
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: PBPRA1264
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-nrfE-nrfX-nrfF -428 4.8 TACCCCTTATTGGGTA PBPRA1259
-304 4.6 TGCTACTTAAGGGGTA
Vibrio fischeri ES114
Position: -294
Score: 5.10486
Sequence: TACCTCTTAAGTGTTA
Position: -206
Score: 4.33189
Sequence: TATCACAAAAGGAGTA
Locus tag: VF_1553
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VF_1552
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VF_1551
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VF_1550
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VF_1549
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VF_1548
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-nrfE-nrfX-nrfF -294 5.1 TACCTCTTAAGTGTTA VF_1553
-206 4.3 TATCACAAAAGGAGTA
Vibrio harveyi ATCC BAA-1116
Position: -277
Score: 5.34721
Sequence: TACCTCTAAAGGGGTA
Position: -175
Score: 3.78978
Sequence: TACCTCTTATGAATAA
Locus tag: VIBHAR_02726
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VIBHAR_02725
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02724
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02723
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VIBHAR_02722
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VIBHAR_02721
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VIBHAR_02720
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nfrC-nrfD-nrfE-nrfX-nrfF -277 5.3 TACCTCTAAAGGGGTA VIBHAR_02726
-175 3.8 TACCTCTTATGAATAA
Vibrio parahaemolyticus RIMD 2210633
Position: -301
Score: 5.34406
Sequence: TACCCCTAAAGTGGTA
Position: -197
Score: 3.93775
Sequence: TACCTCTTAGGAATAA
Locus tag: VP1928
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VP1927
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VP1926
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VP1925
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VP1924
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VP1923
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-nrfE-nrfX-nrfF -301 5.3 TACCCCTAAAGTGGTA VP1928
-197 3.9 TACCTCTTAGGAATAA
Vibrio salmonicida LFI1238
Position: -316
Score: 4.74752
Sequence: TACCACTAAAGTATTA
Position: -229
Score: 4.54623
Sequence: TATCACAAAAGTGGTA
Locus tag: VSAL_I1998
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAL_I1999
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAL_I2000
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VSAL_I2001
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAL_I2002
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VSAL_I2003
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-nrfE-nrfX-nrfF -316 4.7 TACCACTAAAGTATTA VSAL_I1998
-229 4.5 TATCACAAAAGTGGTA
Vibrio shilonii AK1
Position: -304
Score: 5.21816
Sequence: TAACCCTAAAGGGGTA
Position: -196
Score: 4.8477
Sequence: TACCTCTAAAGTGATA
Locus tag: VSAK1_05595
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAK1_05590
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAK1_05585
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VSAK1_05580
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAK1_05575
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-nrfE-nrfF -304 5.2 TAACCCTAAAGGGGTA VSAK1_05595
-196 4.8 TACCTCTAAAGTGATA
Vibrio splendidus LGP32
Position: -305
Score: 5.34406
Sequence: TACCCCTAAAGTGGTA
Position: -163
Score: 4.74746
Sequence: TACCTAATTAGAGGTA
Locus tag: VS_1932
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VS_1931
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VS_1930
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VS_1929
Name: VS_1929
Funciton: Hypothetical protein
Locus tag: VS_1928
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VS_1927
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VS_1926
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
nrfB-nfrC-nrfD-VS_1929-nrfE-nrfX-nrfF -305 5.3 TACCCCTAAAGTGGTA VS_1932
-163 4.7 TACCTAATTAGAGGTA
Vibrio vulnificus CMCP6
Position: -305
Score: 5.42888
Sequence: TACCCCTAAAGGGGTA
Position: -203
Score: 3.72691
Sequence: TACTACTAAAGAGTAG
Locus tag: VV1_3034
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VV1_3033
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VV1_3032
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VV1_3031
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VV1_3030
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
nrfB-nfrC-nrfD-nrfE-nrfX -305 5.4 TACCCCTAAAGGGGTA VV1_3034
-203 3.7 TACTACTAAAGAGTAG
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