Regulon of NarP in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_22419 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Regulog: | NarP - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 50 |
| - Operons | 16 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -199
Score: 4.2 Sequence: TTACCCTTAATGGTTA
Position: -185
Score: 4.4 Sequence: TACTACTAAGTAGGTA
Locus tag: VSAK1_03569
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|||
|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
||
|
Position: -293
Score: 4.3 Sequence: TACTTCTTTTGAGTTA
Locus tag: VSAK1_03680
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VSAK1_03685
Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VSAK1_03690
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VSAK1_03695
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VSAK1_03700
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE |
|||
|
moaA
|
Molybdenum cofactor biosynthesis protein MoaA
|
||
|
moaB
|
Molybdenum cofactor biosynthesis protein MoaB
|
||
|
moaC
|
Molybdenum cofactor biosynthesis protein MoaC
|
||
|
moaD
|
Molybdenum cofactor biosynthesis protein MoaD
|
||
|
moaE
|
Molybdenum cofactor biosynthesis protein MoaE
|
||
|
Position: -105
Score: 4.8 Sequence: CACCTCTAAAGTGGTA
Locus tag: VSAK1_21639
Name: adhB Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
|||
|
adhB
|
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
|
||
|
Position: -144
Score: 5.3 Sequence: TACCACTTTAGTGGTA
Locus tag: VSAK1_03730
Name: nirB3 Funciton: Nitrite reductase large subunit (EC 1.7.1.4) |
|||
|
nirB3
|
Nitrite reductase large subunit (EC 1.7.1.4)
|
||
|
Position: -61
Score: 4.3 Sequence: CTACCCTTAAGGGGTA
Locus tag: VSAK1_11585
Name: fnr Funciton: Fumarate and nitrate reduction regulatory protein, Crp family |
|||
|
fnr
|
Fumarate and nitrate reduction regulatory protein, Crp family
|
||
|
Position: -123
Score: 5 Sequence: TAACCCCTAAGAGGTA
Locus tag: VSAK1_22409
Name: napF Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VSAK1_22404
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VSAK1_22399
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VSAK1_22394
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VSAK1_22389
Name: napC Funciton: Cytochrome c-type protein NapC |
|||
|
napF
|
Periplasmic nitrate reductase, ferredoxin-type protein NapF
|
||
|
napD
|
Periplasmic nitrate reductase component NapD
|
||
|
napA
|
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
|
||
|
napB
|
Nitrate reductase cytochrome c550-type subunit
|
||
|
napC
|
Cytochrome c-type protein NapC
|
||
|
Position: -108
Score: 4 Sequence: TACCACTTTAGAGTAG
Position: -18
Score: 4.4 Sequence: TAACACTTAGGTATTA
Locus tag: VSAK1_05765
Name: nirB Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_05770
Name: nirD Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_05775
Name: nirC Funciton: Nitrite transporter, FNT family
Locus tag: VSAK1_05780
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
|||
|
nirB
|
Nitrite reductase large subunit (EC 1.7.1.4)
|
||
|
nirD
|
Nitrite reductase small subunit (EC 1.7.1.4)
|
||
|
nirC
|
Nitrite transporter, FNT family
|
||
|
cysG
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
|
||
|
Position: -111
Score: 4.4 Sequence: TAACCCTAAGTGGTTA
Position: -24
Score: 4 Sequence: TTCTACTAAAAAGGTA
Locus tag: VSAK1_00285
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
|||
|
pflB
|
Pyruvate formate-lyase (EC 2.3.1.54)
|
||
|
Position: -277
Score: 4.3 Sequence: TTACTCTAAAGGGTTA
Locus tag: VSAK1_04362
Name: torE Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VSAK1_04367
Name: torC Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VSAK1_04372
Name: torA Funciton: Trimethylamine N-oxide reductase, component TorA |
|||
|
torE
|
Trimethylamine N-oxide reductase, component TorE
|
||
|
torC
|
Trimethylamine N-oxide reductase, component TorC
|
||
|
torA
|
Trimethylamine N-oxide reductase, component TorA
|
||
|
Position: -99
Score: 4.7 Sequence: TAACCATTAAGTAGTA
Locus tag: VSAK1_04530
Name: dmsA Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: VSAK1_04535
Name: dmsB Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: VSAK1_04540
Name: dmsC Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: VSAK1_04545
Name: dmsD Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Locus tag: VSAK1_04550
Name: dmsX Funciton: Predicted ferredoxin |
|||
|
dmsA
|
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
|
||
|
dmsB
|
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
|
||
|
dmsC
|
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
|
||
|
dmsD
|
Dimethyl sulfoxide reductase chaperone protein dmsD
|
||
|
dmsX
|
Predicted ferredoxin
|
||
|
Position: -206
Score: 5.2 Sequence: TACCCCTTTAGGGTTA
Locus tag: VSAK1_05600
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) |
|||
|
nrfA
|
Nitrite reductase, cytochrome c(552)
|
||
|
Position: -133
Score: 4.9 Sequence: TACCTCTTAGGGGTTA
Locus tag: VSAK1_22414
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VSAK1_22419
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
|||
|
narQ
|
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
|
||
|
narP
|
Nitrate/nitrite response regulator protein NarP, LuxR family
|
||
|
Position: -304
Score: 5.2 Sequence: TAACCCTAAAGGGGTA
Position: -196
Score: 4.8 Sequence: TACCTCTAAAGTGATA
Locus tag: VSAK1_05595
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAK1_05590
Name: nfrC Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAK1_05585
Name: nrfD Funciton: Nitrite reductase, NrfD component
Locus tag: VSAK1_05580
Name: nrfE Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAK1_05575
Name: nrfF Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
|||
|
nrfB
|
Cytochrome c-type protein NrfB precursor
|
||
|
nfrC
|
Nitrite reductase, Fe-S center subunit
|
||
|
nrfD
|
Nitrite reductase, NrfD component
|
||
|
nrfE
|
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
|
||
|
nrfF
|
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
|
||
|
Position: -61
Score: 4.8 Sequence: TACTACTAAAGGAGTA
Locus tag: VSAK1_18027
Name: torY Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VSAK1_18032
Name: torZ Funciton: Biotin sulfoxide reductase |
|||
|
torY
|
Biotin sulfoxide reductase, cytochrome c-type
|
||
|
torZ
|
Biotin sulfoxide reductase
|
||
|
Position: -285
Score: 5.3 Sequence: TACCACTaaAGTGGTA
Locus tag: VSAK1_03740
Name: cysG2 Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: VSAK1_03745
Name: nirB2 Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_03750
Name: nirD2 Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_03755
Name: narK2 Funciton: Nitrate/nitrite antiporter |
|||
|
cysG2
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
|
||
|
nirB2
|
Nitrite reductase large subunit (EC 1.7.1.4)
|
||
|
nirD2
|
Nitrite reductase small subunit (EC 1.7.1.4)
|
||
|
narK2
|
Nitrate/nitrite antiporter
|
||
|
Position: -145
Score: 5.1 Sequence: TACCACTTTATGGGTA
Locus tag: VSAK1_03174
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAK1_03179
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAK1_03184
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAK1_03189
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAK1_03194
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAK1_03199
Name: ccmF Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAK1_03204
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAK1_03209
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAK1_03214
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH |
|||
|
ccmA
|
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
|
||
|
ccmB
|
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
|
||
|
ccmC
|
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
|
||
|
ccmD
|
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
|
||
|
ccmE
|
Cytochrome c-type biogenesis protein CcmE, heme chaperone
|
||
|
ccmF
|
Cytochrome c heme lyase, subunit CcmF
|
||
|
ccmG
|
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
|
||
|
ccmH
|
Cytochrome c heme lyase, subunit CcmH
|
||
|
ccmH
|
Cytochrome c heme lyase, subunit CcmH
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |