Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Vibrio shilonii AK1

Properties
Regulator type: Transcription factor
TF locus tag: VSAK1_22419
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 50
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -199
Score: 4.2
Sequence: TTACCCTTAATGGTTA
Position: -185
Score: 4.4
Sequence: TACTACTAAGTAGGTA
Locus tag: VSAK1_03569
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VSAK1_03569
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -293
Score: 4.3
Sequence: TACTTCTTTTGAGTTA
Locus tag: VSAK1_03680
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VSAK1_03685
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VSAK1_03690
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VSAK1_03695
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VSAK1_03700
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
VSAK1_03680
moaA
Molybdenum cofactor biosynthesis protein MoaA
VSAK1_03685
moaB
Molybdenum cofactor biosynthesis protein MoaB
VSAK1_03690
moaC
Molybdenum cofactor biosynthesis protein MoaC
VSAK1_03695
moaD
Molybdenum cofactor biosynthesis protein MoaD
VSAK1_03700
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -105
Score: 4.8
Sequence: CACCTCTAAAGTGGTA
Locus tag: VSAK1_21639
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
VSAK1_21639
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -144
Score: 5.3
Sequence: TACCACTTTAGTGGTA
Locus tag: VSAK1_03730
Name: nirB3
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
VSAK1_03730
nirB3
Nitrite reductase large subunit (EC 1.7.1.4)
Position: -61
Score: 4.3
Sequence: CTACCCTTAAGGGGTA
Locus tag: VSAK1_11585
Name: fnr
Funciton: Fumarate and nitrate reduction regulatory protein, Crp family
VSAK1_11585
fnr
Fumarate and nitrate reduction regulatory protein, Crp family
Position: -123
Score: 5
Sequence: TAACCCCTAAGAGGTA
Locus tag: VSAK1_22409
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VSAK1_22404
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VSAK1_22399
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VSAK1_22394
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VSAK1_22389
Name: napC
Funciton: Cytochrome c-type protein NapC
VSAK1_22409
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
VSAK1_22404
napD
Periplasmic nitrate reductase component NapD
VSAK1_22399
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
VSAK1_22394
napB
Nitrate reductase cytochrome c550-type subunit
VSAK1_22389
napC
Cytochrome c-type protein NapC
Position: -108
Score: 4
Sequence: TACCACTTTAGAGTAG
Position: -18
Score: 4.4
Sequence: TAACACTTAGGTATTA
Locus tag: VSAK1_05765
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_05770
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_05775
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VSAK1_05780
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
VSAK1_05765
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
VSAK1_05770
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
VSAK1_05775
nirC
Nitrite transporter, FNT family
VSAK1_05780
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -111
Score: 4.4
Sequence: TAACCCTAAGTGGTTA
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VSAK1_00285
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
VSAK1_00285
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -277
Score: 4.3
Sequence: TTACTCTAAAGGGTTA
Locus tag: VSAK1_04362
Name: torE
Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VSAK1_04367
Name: torC
Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VSAK1_04372
Name: torA
Funciton: Trimethylamine N-oxide reductase, component TorA
VSAK1_04362
torE
Trimethylamine N-oxide reductase, component TorE
VSAK1_04367
torC
Trimethylamine N-oxide reductase, component TorC
VSAK1_04372
torA
Trimethylamine N-oxide reductase, component TorA
Position: -99
Score: 4.7
Sequence: TAACCATTAAGTAGTA
Locus tag: VSAK1_04530
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: VSAK1_04535
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: VSAK1_04540
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: VSAK1_04545
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Locus tag: VSAK1_04550
Name: dmsX
Funciton: Predicted ferredoxin
VSAK1_04530
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
VSAK1_04535
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
VSAK1_04540
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
VSAK1_04545
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
VSAK1_04550
dmsX
Predicted ferredoxin
Position: -206
Score: 5.2
Sequence: TACCCCTTTAGGGTTA
Locus tag: VSAK1_05600
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
VSAK1_05600
nrfA
Nitrite reductase, cytochrome c(552)
Position: -133
Score: 4.9
Sequence: TACCTCTTAGGGGTTA
Locus tag: VSAK1_22414
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VSAK1_22419
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
VSAK1_22414
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
VSAK1_22419
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -304
Score: 5.2
Sequence: TAACCCTAAAGGGGTA
Position: -196
Score: 4.8
Sequence: TACCTCTAAAGTGATA
Locus tag: VSAK1_05595
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VSAK1_05590
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VSAK1_05585
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VSAK1_05580
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VSAK1_05575
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
VSAK1_05595
nrfB
Cytochrome c-type protein NrfB precursor
VSAK1_05590
nfrC
Nitrite reductase, Fe-S center subunit
VSAK1_05585
nrfD
Nitrite reductase, NrfD component
VSAK1_05580
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
VSAK1_05575
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
Position: -61
Score: 4.8
Sequence: TACTACTAAAGGAGTA
Locus tag: VSAK1_18027
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VSAK1_18032
Name: torZ
Funciton: Biotin sulfoxide reductase
VSAK1_18027
torY
Biotin sulfoxide reductase, cytochrome c-type
VSAK1_18032
torZ
Biotin sulfoxide reductase
Position: -285
Score: 5.3
Sequence: TACCACTaaAGTGGTA
Locus tag: VSAK1_03740
Name: cysG2
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: VSAK1_03745
Name: nirB2
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VSAK1_03750
Name: nirD2
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VSAK1_03755
Name: narK2
Funciton: Nitrate/nitrite antiporter
VSAK1_03740
cysG2
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
VSAK1_03745
nirB2
Nitrite reductase large subunit (EC 1.7.1.4)
VSAK1_03750
nirD2
Nitrite reductase small subunit (EC 1.7.1.4)
VSAK1_03755
narK2
Nitrate/nitrite antiporter
Position: -145
Score: 5.1
Sequence: TACCACTTTATGGGTA
Locus tag: VSAK1_03174
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VSAK1_03179
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VSAK1_03184
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VSAK1_03189
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VSAK1_03194
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VSAK1_03199
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VSAK1_03204
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VSAK1_03209
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VSAK1_03214
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
VSAK1_03174
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
VSAK1_03179
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
VSAK1_03184
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
VSAK1_03189
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
VSAK1_03194
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
VSAK1_03199
ccmF
Cytochrome c heme lyase, subunit CcmF
VSAK1_03204
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
VSAK1_03209
ccmH
Cytochrome c heme lyase, subunit CcmH
VSAK1_03214
ccmH
Cytochrome c heme lyase, subunit CcmH
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