Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Vibrio splendidus LGP32

Properties
Regulator type: Transcription factor
TF locus tag: VS_II0602
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 33
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 4.1
Sequence: TACCCCTTTAGGGTAG
Locus tag: VS_II0668
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VS_II0669
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VS_II0670
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: VS_II0671
Name: cysG
Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
VS_II0668
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
VS_II0669
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
VS_II0670
nirC
Nitrite transporter, FNT family
VS_II0671
cysG
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -297
Score: 4.5
Sequence: TACTACTTAGTAGGTA
Locus tag: VS_2005
Name: torE
Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VS_2004
Name: torC
Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VS_2003
Name: torA
Funciton: Trimethylamine N-oxide reductase, component TorA
VS_2005
torE
Trimethylamine N-oxide reductase, component TorE
VS_2004
torC
Trimethylamine N-oxide reductase, component TorC
VS_2003
torA
Trimethylamine N-oxide reductase, component TorA
Position: -110
Score: 4.4
Sequence: TAATCACAAAGTGGTA
Locus tag: VS_II0445
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
VS_II0445
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -141
Score: 4.7
Sequence: TACCACTTAAGGCTTA
Locus tag: VS_0248
Name: frdA
Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: VS_0247
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: VS_0246
Name: frdC
Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: VS_0245
Name: frdD
Funciton: Fumarate reductase subunit D (EC 1.3.5.4)
VS_0248
frdA
Fumarate reductase subunit A (EC 1.3.5.4)
VS_0247
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
VS_0246
frdC
Fumarate reductase subunit C (EC 1.3.5.4)
VS_0245
frdD
Fumarate reductase subunit D (EC 1.3.5.4)
Position: -239
Score: 5.3
Sequence: TACCCCTAAAGTGGTA
Locus tag: VS_II1026
Name: nirB3
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
VS_II1026
nirB3
Nitrite reductase large subunit (EC 1.7.1.4)
Position: -124
Score: 5
Sequence: TAGCCCTTAAGGGGTA
Locus tag: VS_II0600
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VS_II0599
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VS_II0598
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VS_II0597
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VS_II0596
Name: napC
Funciton: Cytochrome c-type protein NapC
VS_II0600
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
VS_II0599
napD
Periplasmic nitrate reductase component NapD
VS_II0598
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
VS_II0597
napB
Nitrate reductase cytochrome c550-type subunit
VS_II0596
napC
Cytochrome c-type protein NapC
Position: -176
Score: 4.1
Sequence: TACTACTTTTTGGTTA
Position: -162
Score: 4.1
Sequence: TAATTCTTTTTGGGTA
Locus tag: VS_0958
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VS_0958
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -305
Score: 5.3
Sequence: TACCCCTAAAGTGGTA
Position: -163
Score: 4.7
Sequence: TACCTAATTAGAGGTA
Locus tag: VS_1932
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VS_1931
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VS_1930
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VS_1929
Name: VS_1929
Funciton: Hypothetical protein
Locus tag: VS_1928
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VS_1927
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VS_1926
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
VS_1932
nrfB
Cytochrome c-type protein NrfB precursor
VS_1931
nfrC
Nitrite reductase, Fe-S center subunit
VS_1930
nrfD
Nitrite reductase, NrfD component
VS_1929
VS_1929
Hypothetical protein
VS_1928
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
VS_1927
nrfX
Nitrite reductase, predicted component NrfX
VS_1926
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
Position: -24
Score: 4
Sequence: TTCTACTAAAAAGGTA
Locus tag: VS_1052
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
VS_1052
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -235
Score: 5.4
Sequence: TACCACTTTAGGGGTA
Locus tag: VS_1933
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
VS_1933
nrfA
Nitrite reductase, cytochrome c(552)
Position: -145
Score: 5.2
Sequence: TACCCCTTAAGGGCTA
Locus tag: VS_II0601
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VS_II0602
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
VS_II0601
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
VS_II0602
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -249
Score: 5.4
Sequence: TACCACTTTAGGGGTA
Locus tag: VS_II1027
Name: nirB2
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VS_II1028
Name: nirD2
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VS_II1029
Name: narK2
Funciton: Nitrate/nitrite antiporter
VS_II1027
nirB2
Nitrite reductase large subunit (EC 1.7.1.4)
VS_II1028
nirD2
Nitrite reductase small subunit (EC 1.7.1.4)
VS_II1029
narK2
Nitrate/nitrite antiporter
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