Regulon of NarP in Vibrio splendidus LGP32
| Regulator type: | Transcription factor |
| TF locus tag: | VS_II0602 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Regulog: | NarP - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 33 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -109
Score: 4.1 Sequence: TACCCCTTTAGGGTAG
Locus tag: VS_II0668
Name: nirB Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VS_II0669
Name: nirD Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VS_II0670
Name: nirC Funciton: Nitrite transporter, FNT family
Locus tag: VS_II0671
Name: cysG Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nirB
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Nitrite reductase large subunit (EC 1.7.1.4)
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nirD
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Nitrite reductase small subunit (EC 1.7.1.4)
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nirC
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Nitrite transporter, FNT family
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cysG
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -297
Score: 4.5 Sequence: TACTACTTAGTAGGTA
Locus tag: VS_2005
Name: torE Funciton: Trimethylamine N-oxide reductase, component TorE
Locus tag: VS_2004
Name: torC Funciton: Trimethylamine N-oxide reductase, component TorC
Locus tag: VS_2003
Name: torA Funciton: Trimethylamine N-oxide reductase, component TorA |
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torE
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Trimethylamine N-oxide reductase, component TorE
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torC
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Trimethylamine N-oxide reductase, component TorC
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torA
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Trimethylamine N-oxide reductase, component TorA
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Position: -110
Score: 4.4 Sequence: TAATCACAAAGTGGTA
Locus tag: VS_II0445
Name: adhB Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
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adhB
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Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
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Position: -141
Score: 4.7 Sequence: TACCACTTAAGGCTTA
Locus tag: VS_0248
Name: frdA Funciton: Fumarate reductase subunit A (EC 1.3.5.4)
Locus tag: VS_0247
Name: frdB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Locus tag: VS_0246
Name: frdC Funciton: Fumarate reductase subunit C (EC 1.3.5.4)
Locus tag: VS_0245
Name: frdD Funciton: Fumarate reductase subunit D (EC 1.3.5.4) |
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frdA
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Fumarate reductase subunit A (EC 1.3.5.4)
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frdB
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Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
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frdC
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Fumarate reductase subunit C (EC 1.3.5.4)
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frdD
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Fumarate reductase subunit D (EC 1.3.5.4)
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Position: -239
Score: 5.3 Sequence: TACCCCTAAAGTGGTA
Locus tag: VS_II1026
Name: nirB3 Funciton: Nitrite reductase large subunit (EC 1.7.1.4) |
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nirB3
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Nitrite reductase large subunit (EC 1.7.1.4)
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Position: -124
Score: 5 Sequence: TAGCCCTTAAGGGGTA
Locus tag: VS_II0600
Name: napF Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VS_II0599
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VS_II0598
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VS_II0597
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VS_II0596
Name: napC Funciton: Cytochrome c-type protein NapC |
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napF
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Periplasmic nitrate reductase, ferredoxin-type protein NapF
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB
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Nitrate reductase cytochrome c550-type subunit
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napC
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Cytochrome c-type protein NapC
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Position: -176
Score: 4.1 Sequence: TACTACTTTTTGGTTA
Position: -162
Score: 4.1 Sequence: TAATTCTTTTTGGGTA
Locus tag: VS_0958
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -305
Score: 5.3 Sequence: TACCCCTAAAGTGGTA
Position: -163
Score: 4.7 Sequence: TACCTAATTAGAGGTA
Locus tag: VS_1932
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VS_1931
Name: nfrC Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VS_1930
Name: nrfD Funciton: Nitrite reductase, NrfD component
Locus tag: VS_1929
Name: VS_1929 Funciton: Hypothetical protein
Locus tag: VS_1928
Name: nrfE Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VS_1927
Name: nrfX Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VS_1926
Name: nrfF Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
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nrfB
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Cytochrome c-type protein NrfB precursor
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nfrC
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Nitrite reductase, Fe-S center subunit
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nrfD
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Nitrite reductase, NrfD component
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VS_1929
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Hypothetical protein
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nrfE
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
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nrfX
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Nitrite reductase, predicted component NrfX
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nrfF
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
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Position: -24
Score: 4 Sequence: TTCTACTAAAAAGGTA
Locus tag: VS_1052
Name: pflB Funciton: Pyruvate formate-lyase (EC 2.3.1.54) |
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pflB
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Pyruvate formate-lyase (EC 2.3.1.54)
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Position: -235
Score: 5.4 Sequence: TACCACTTTAGGGGTA
Locus tag: VS_1933
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) |
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nrfA
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Nitrite reductase, cytochrome c(552)
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Position: -145
Score: 5.2 Sequence: TACCCCTTAAGGGCTA
Locus tag: VS_II0601
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VS_II0602
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -249
Score: 5.4 Sequence: TACCACTTTAGGGGTA
Locus tag: VS_II1027
Name: nirB2 Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VS_II1028
Name: nirD2 Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: VS_II1029
Name: narK2 Funciton: Nitrate/nitrite antiporter |
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nirB2
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Nitrite reductase large subunit (EC 1.7.1.4)
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nirD2
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Nitrite reductase small subunit (EC 1.7.1.4)
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narK2
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Nitrate/nitrite antiporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |