Regulon of NarP in Vibrio harveyi ATCC BAA-1116
| Regulator type: | Transcription factor |
| TF locus tag: | VIBHAR_05381 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Regulog: | NarP - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 40 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrite
- By effector - Nitrate
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -277
Score: 5.3 Sequence: TACCTCTAAAGGGGTA
Position: -175
Score: 3.8 Sequence: TACCTCTTATGAATAA
Locus tag: VIBHAR_02726
Name: nrfB Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VIBHAR_02725
Name: nfrC Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02724
Name: nfrC Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02723
Name: nrfD Funciton: Nitrite reductase, NrfD component
Locus tag: VIBHAR_02722
Name: nrfE Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VIBHAR_02721
Name: nrfX Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VIBHAR_02720
Name: nrfF Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF |
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nrfB
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Cytochrome c-type protein NrfB precursor
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nfrC
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Nitrite reductase, Fe-S center subunit
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nfrC
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Nitrite reductase, Fe-S center subunit
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nrfD
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Nitrite reductase, NrfD component
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nrfE
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
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nrfX
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Nitrite reductase, predicted component NrfX
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nrfF
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Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
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Position: -225
Score: 4.9 Sequence: TACCACCAAAGGGTTA
Locus tag: VIBHAR_00154
Name: aspA Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VIBHAR_00155
Name: dcuA Funciton: C4-dicarboxylate transporter |
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aspA
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Aspartate ammonia-lyase (EC 4.3.1.1)
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dcuA
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C4-dicarboxylate transporter
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Position: -112
Score: 5.1 Sequence: TACCTCTAAGGGGGTA
Locus tag: VIBHAR_05412
Name: adhB Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1) |
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adhB
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Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
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Position: -122
Score: 5.1 Sequence: TACCTCCTAAGAGGTA
Locus tag: VIBHAR_05379
Name: napF Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VIBHAR_05378
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VIBHAR_05377
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VIBHAR_05376
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VIBHAR_05375
Name: napC Funciton: Cytochrome c-type protein NapC |
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napF
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Periplasmic nitrate reductase, ferredoxin-type protein NapF
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napB
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Nitrate reductase cytochrome c550-type subunit
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napC
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Cytochrome c-type protein NapC
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Position: -235
Score: 4.4 Sequence: TACTCACTAAGCGGTA
Locus tag: VIBHAR_02954
Name: moaA Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VIBHAR_02953
Name: moaB Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VIBHAR_02952
Name: moaC Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VIBHAR_02951
Name: moaD Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VIBHAR_02950
Name: moaE Funciton: Molybdenum cofactor biosynthesis protein MoaE |
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moaA
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Molybdenum cofactor biosynthesis protein MoaA
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moaB
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Molybdenum cofactor biosynthesis protein MoaB
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moaC
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Molybdenum cofactor biosynthesis protein MoaC
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moaD
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Molybdenum cofactor biosynthesis protein MoaD
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moaE
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Molybdenum cofactor biosynthesis protein MoaE
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Position: -191
Score: 4.4 Sequence: CACTACTTTGGGGGTA
Locus tag: VIBHAR_03018
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -276
Score: 4.9 Sequence: TACCACTTTGGGGTTA
Locus tag: VIBHAR_05588
Name: nrtC Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VIBHAR_05589
Name: nrtB Funciton: Nitrate ABC transporter, permease protein
Locus tag: VIBHAR_05590
Name: nrtD Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VIBHAR_05591
Name: nirB4 Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VIBHAR_05592
Name: nirD4 Funciton: Nitrite reductase large subunit (EC 1.7.1.4) |
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nrtC
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Nitrate ABC transporter, substrate-binding protein
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nrtB
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Nitrate ABC transporter, permease protein
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nrtD
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Nitrate ABC transporter, ATP-binding protein
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nirB4
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Nitrite reductase large subunit (EC 1.7.1.4)
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nirD4
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Nitrite reductase large subunit (EC 1.7.1.4)
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Position: -188
Score: 5.1 Sequence: TACCTCTTAGGAGGTA
Locus tag: VIBHAR_05380
Name: narQ Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VIBHAR_05381
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -207
Score: 5.3 Sequence: TACCCCTTTAGAGGTA
Locus tag: VIBHAR_02727
Name: nrfA Funciton: Nitrite reductase, cytochrome c(552) |
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nrfA
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Nitrite reductase, cytochrome c(552)
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Position: -61
Score: 5 Sequence: TACTACTAAAGAGGTA
Locus tag: VIBHAR_06847
Name: torY Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VIBHAR_06846
Name: torZ Funciton: Biotin sulfoxide reductase |
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torY
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Biotin sulfoxide reductase, cytochrome c-type
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torZ
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Biotin sulfoxide reductase
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Position: -146
Score: 3.9 Sequence: TAATCACTTATGGTTA
Locus tag: VIBHAR_03135
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VIBHAR_03134
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VIBHAR_03133
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VIBHAR_03132
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VIBHAR_03131
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VIBHAR_03130
Name: ccmF Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VIBHAR_03129
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VIBHAR_03128
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VIBHAR_03127
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH |
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ccmA
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ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
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ccmB
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ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
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ccmD
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Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
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ccmE
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Cytochrome c-type biogenesis protein CcmE, heme chaperone
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ccmF
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Cytochrome c heme lyase, subunit CcmF
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ccmG
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Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
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ccmH
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Cytochrome c heme lyase, subunit CcmH
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ccmH
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Cytochrome c heme lyase, subunit CcmH
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |