Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_05381
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Vibrionales
Statistics of regulated genes:
- Genes 40
- Operons 11
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 135 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -277
Score: 5.3
Sequence: TACCTCTAAAGGGGTA
Position: -175
Score: 3.8
Sequence: TACCTCTTATGAATAA
Locus tag: VIBHAR_02726
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VIBHAR_02725
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02724
Name: nfrC
Funciton: Nitrite reductase, Fe-S center subunit
Locus tag: VIBHAR_02723
Name: nrfD
Funciton: Nitrite reductase, NrfD component
Locus tag: VIBHAR_02722
Name: nrfE
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
Locus tag: VIBHAR_02721
Name: nrfX
Funciton: Nitrite reductase, predicted component NrfX
Locus tag: VIBHAR_02720
Name: nrfF
Funciton: Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
VIBHAR_02726
nrfB
Cytochrome c-type protein NrfB precursor
VIBHAR_02725
nfrC
Nitrite reductase, Fe-S center subunit
VIBHAR_02724
nfrC
Nitrite reductase, Fe-S center subunit
VIBHAR_02723
nrfD
Nitrite reductase, NrfD component
VIBHAR_02722
nrfE
Nitrite reductase, cytochrome c-type heme lyase subunit nrfE
VIBHAR_02721
nrfX
Nitrite reductase, predicted component NrfX
VIBHAR_02720
nrfF
Nitrite reductase, cytochrome c-type heme lyase subunit nrfF
Position: -225
Score: 4.9
Sequence: TACCACCAAAGGGTTA
Locus tag: VIBHAR_00154
Name: aspA
Funciton: Aspartate ammonia-lyase (EC 4.3.1.1)
Locus tag: VIBHAR_00155
Name: dcuA
Funciton: C4-dicarboxylate transporter
VIBHAR_00154
aspA
Aspartate ammonia-lyase (EC 4.3.1.1)
VIBHAR_00155
dcuA
C4-dicarboxylate transporter
Position: -112
Score: 5.1
Sequence: TACCTCTAAGGGGGTA
Locus tag: VIBHAR_05412
Name: adhB
Funciton: Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
VIBHAR_05412
adhB
Alcohol dehydrogenase, iron-containing (EC 1.1.1.1)
Position: -122
Score: 5.1
Sequence: TACCTCCTAAGAGGTA
Locus tag: VIBHAR_05379
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: VIBHAR_05378
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: VIBHAR_05377
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: VIBHAR_05376
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: VIBHAR_05375
Name: napC
Funciton: Cytochrome c-type protein NapC
VIBHAR_05379
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
VIBHAR_05378
napD
Periplasmic nitrate reductase component NapD
VIBHAR_05377
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
VIBHAR_05376
napB
Nitrate reductase cytochrome c550-type subunit
VIBHAR_05375
napC
Cytochrome c-type protein NapC
Position: -235
Score: 4.4
Sequence: TACTCACTAAGCGGTA
Locus tag: VIBHAR_02954
Name: moaA
Funciton: Molybdenum cofactor biosynthesis protein MoaA
Locus tag: VIBHAR_02953
Name: moaB
Funciton: Molybdenum cofactor biosynthesis protein MoaB
Locus tag: VIBHAR_02952
Name: moaC
Funciton: Molybdenum cofactor biosynthesis protein MoaC
Locus tag: VIBHAR_02951
Name: moaD
Funciton: Molybdenum cofactor biosynthesis protein MoaD
Locus tag: VIBHAR_02950
Name: moaE
Funciton: Molybdenum cofactor biosynthesis protein MoaE
VIBHAR_02954
moaA
Molybdenum cofactor biosynthesis protein MoaA
VIBHAR_02953
moaB
Molybdenum cofactor biosynthesis protein MoaB
VIBHAR_02952
moaC
Molybdenum cofactor biosynthesis protein MoaC
VIBHAR_02951
moaD
Molybdenum cofactor biosynthesis protein MoaD
VIBHAR_02950
moaE
Molybdenum cofactor biosynthesis protein MoaE
Position: -191
Score: 4.4
Sequence: CACTACTTTGGGGGTA
Locus tag: VIBHAR_03018
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
VIBHAR_03018
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -276
Score: 4.9
Sequence: TACCACTTTGGGGTTA
Locus tag: VIBHAR_05588
Name: nrtC
Funciton: Nitrate ABC transporter, substrate-binding protein
Locus tag: VIBHAR_05589
Name: nrtB
Funciton: Nitrate ABC transporter, permease protein
Locus tag: VIBHAR_05590
Name: nrtD
Funciton: Nitrate ABC transporter, ATP-binding protein
Locus tag: VIBHAR_05591
Name: nirB4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: VIBHAR_05592
Name: nirD4
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
VIBHAR_05588
nrtC
Nitrate ABC transporter, substrate-binding protein
VIBHAR_05589
nrtB
Nitrate ABC transporter, permease protein
VIBHAR_05590
nrtD
Nitrate ABC transporter, ATP-binding protein
VIBHAR_05591
nirB4
Nitrite reductase large subunit (EC 1.7.1.4)
VIBHAR_05592
nirD4
Nitrite reductase large subunit (EC 1.7.1.4)
Position: -188
Score: 5.1
Sequence: TACCTCTTAGGAGGTA
Locus tag: VIBHAR_05380
Name: narQ
Funciton: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Locus tag: VIBHAR_05381
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
VIBHAR_05380
narQ
Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
VIBHAR_05381
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -207
Score: 5.3
Sequence: TACCCCTTTAGAGGTA
Locus tag: VIBHAR_02727
Name: nrfA
Funciton: Nitrite reductase, cytochrome c(552)
VIBHAR_02727
nrfA
Nitrite reductase, cytochrome c(552)
Position: -61
Score: 5
Sequence: TACTACTAAAGAGGTA
Locus tag: VIBHAR_06847
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: VIBHAR_06846
Name: torZ
Funciton: Biotin sulfoxide reductase
VIBHAR_06847
torY
Biotin sulfoxide reductase, cytochrome c-type
VIBHAR_06846
torZ
Biotin sulfoxide reductase
Position: -146
Score: 3.9
Sequence: TAATCACTTATGGTTA
Locus tag: VIBHAR_03135
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: VIBHAR_03134
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: VIBHAR_03133
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: VIBHAR_03132
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: VIBHAR_03131
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: VIBHAR_03130
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: VIBHAR_03129
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: VIBHAR_03128
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: VIBHAR_03127
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
VIBHAR_03135
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
VIBHAR_03134
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
VIBHAR_03133
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
VIBHAR_03132
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
VIBHAR_03131
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
VIBHAR_03130
ccmF
Cytochrome c heme lyase, subunit CcmF
VIBHAR_03129
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
VIBHAR_03128
ccmH
Cytochrome c heme lyase, subunit CcmH
VIBHAR_03127
ccmH
Cytochrome c heme lyase, subunit CcmH
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