Regulon of FadR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_03434 |
| Regulator family: | GntR/Others |
| Regulation mode: | repressor (activator) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Regulog: | FadR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FadR
- By taxonomy - Vibrionales
- By TF family - GntR/Others
- By effector - Palmitoyl-CoA
- By effector - Oleoyl-CoA
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -31
Score: 5.2 Sequence: CTGTGGTCAGACCTCTT
Locus tag: VSAK1_03244
Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: VSAK1_03249
Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) |
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fadI
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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fadJ
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Enoyl-CoA hydratase (EC 4.2.1.17)
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Position: -115
Score: 4.8 Sequence: TACTGGTCAGATTTCTA
Locus tag: VSAK1_03229
Name: fadL Funciton: Long-chain fatty acid transport protein |
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fadL
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Long-chain fatty acid transport protein
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Position: -43
Score: 5.4 Sequence: TTCTGGTCAGACCACAA
Locus tag: VSAK1_03494
Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) |
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fadH
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2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
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Position: -52
Score: 4.7 Sequence: AACACGTCTGACCAGTT
Locus tag: VSAK1_10623
Name: VC2105 Funciton: Thioesterase/thiol ester dehydrase-isomerase |
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VC2105
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Thioesterase/thiol ester dehydrase-isomerase
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Position: -83
Score: 4.8 Sequence: TACTGGTACGACCTCTT
Locus tag: VSAK1_07334
Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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fadE2
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
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Position: -132
Score: 4.7 Sequence: AAAAGGTAAGACCAGTT
Locus tag: VSAK1_12467
Name: plsB Funciton: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) |
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plsB
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Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
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Position: -76
Score: 5.1 Sequence: AACTGGTCTAACCAGAA
Locus tag: VSAK1_12702
Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: VSAK1_12697
Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
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fadB
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Enoyl-CoA hydratase (EC 4.2.1.17)
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fadA
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3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |