Regulon of PsrA in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type:	Transcription factor
TF locus tag:	VIBHAR_02639
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Vibrionales
Statistics of regulated genes:
- Genes	9
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 49 sites [see more]

Member of regulog collections

By trascription factor - PsrA
By taxonomy - Vibrionales
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -78 Score: 4.9 Sequence: ATGTAAACGGCTGTTTGATC Locus tag: VIBHAR_03043 Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
	VIBHAR_03043	fadH	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -78 Score: 5.7 Sequence: ATTTAAACGCATGTTTGATA Locus tag: VIBHAR_03121 Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Locus tag: VIBHAR_03120 Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	VIBHAR_03121	fadI	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	VIBHAR_03120	fadJ	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -186 Score: 5.5 Sequence: TGTTAAACACTTGTTTAAAA Locus tag: VIBHAR_00460 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) Locus tag: VIBHAR_00459 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
	VIBHAR_00460	fadB	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
	VIBHAR_00459	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -348 Score: 5.6 Sequence: ATTCATACACTTGTTTAAAT Position: -265 Score: 5.6 Sequence: AATCAAACACTTGTTTGATA Locus tag: VIBHAR_01041 Name: mdh Funciton: Malate synthase (EC 2.3.3.9)
	VIBHAR_01041	mdh	Malate synthase (EC 2.3.3.9)
Position: -32 Score: 5.5 Sequence: TTTCAAACAGTTGTTTAATA Locus tag: VIBHAR_02639 Name: psrA Funciton: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family Locus tag: VIBHAR_02638 Name: fadE Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	VIBHAR_02639	psrA	Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family
	VIBHAR_02638	fadE	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -112 Score: 5.6 Sequence: ATTTAAACAAGTGTTTGAGA Locus tag: VIBHAR_01379 Name: fadD Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
	VIBHAR_01379	fadD	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD