Collection of regulogs for PsrA transcription factor
Genomes | 110 |
TF regulogs | 12 |
TF regulons | 76 |
TF binding sites | 673 |
Transcription factors PsrA belong to the TetR protein family and control the fatty acid degradation in Proteobacteria. The PsrA regulon and its DNA-binding motif were discovered by application of the comparative genomic approach to the fatty acid degradation genes in the Shewanella lineage [21810205]. Then PsrA regulons were reconstructed in other taxonomic groups of Proteobacteria that possess an ortholog of the PsrA regulator [18820024]. The reconstructed PsrA regulons in different taxonomic groups showed the significant variability in their gene content.
Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
---|---|---|---|---|
Proteobacteria/alpha | PsrA - Caulobacterales | 4 (4) | 70 | ![]() |
Proteobacteria/alpha | PsrA - Rhizobiales | 3 (15) | 12 | ![]() |
Proteobacteria/beta | PsrA - Burkholderia | 8 (8) | 16 | ![]() |
Proteobacteria/beta | PsrA - Ralstonia | 6 (6) | 9 | ![]() |
Proteobacteria/beta | PsrA - Various betaproteobacteria | 5 (12) | 34 | ![]() |
Proteobacteria/gamma | PsrA - Alteromonadales | 4 (9) | 26 | ![]() |
Proteobacteria/gamma | PsrA - Oceanospirillales/Alteromonadales | 8 (12) | 67 | ![]() |
Proteobacteria/gamma | PsrA - Pseudomonadaceae | 8 (8) | 69 | ![]() |
Proteobacteria/gamma | PsrA - Psychromonadaceae/Aeromonadales | 3 (6) | 19 | ![]() |
Proteobacteria/gamma | PsrA - Shewanellaceae | 16 (16) | 295 | ![]() |
Proteobacteria/gamma | PsrA - Vibrionales | 8 (10) | 49 | ![]() |
Proteobacteria/gamma | PsrA - Xanthomonadales | 3 (4) | 7 | ![]() |