Regulog PsrA - Psychromonadaceae/Aeromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Psychromonadaceae/Aeromonadales
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Psychromonas ingrahamii 37 | ||
| Psychromonas sp. CNPT3 | ||
| Moritella sp. PE36 | 9 | 6 |
| Aeromonas hydrophila subsp. hydrophila ATCC 7966 | 7 | 4 |
| Aeromonas salmonicida subsp. salmonicida A449 | 7 | 4 |
| Tolumonas auensis DSM 9187 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fadB |
Gene: Ping_2604: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: PCNPT3_08305: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Moritella sp. PE36 Site: position = -135 score = 5.5612 sequence = AGTTAAACAGTCGTTTAAAA Site: position = -122 score = 4.77819 sequence = TTTAAAATAAGTGTTGAAAT Gene: PE36_15295: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -123 score = 5.13755 sequence = TGTTAAACGAATGTTTTAAA Site: position = -110 score = 4.83827 sequence = TTTTAAATAGGTGTTGAAAT Gene: AHA_0139: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -123 score = 5.18814 sequence = TGTTAAACAAATGTTTTAAA Site: position = -110 score = 4.76722 sequence = TTTTAAATAGGTGTTGAAAA Gene: ASA_4250: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| fadA |
|
|
Gene: PE36_15300: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: AHA_0138: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: ASA_4251: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| CRON 2. | |||||||
| PE36_15065 |
|
|
*
Moritella sp. PE36 Site: position = -55 score = 5.66225 sequence = ATTCAAACATATGTTTGAAA Gene: PE36_15065: acetyl-CoA acetyltransferase |
|
|
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acetyl-CoA acetyltransferase |
| CRON 3. | |||||||
| fadI |
|
|
*2
Moritella sp. PE36 Site: position = -96 score = 5.10759 sequence = TTTCAAACTAATGTTTGAAT Gene: PE36_17987: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Gene: PE36_12372: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -100 score = 4.82321 sequence = TTTCAATCAGCCGTATGAAA Gene: AHA_2153: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 4.82321 sequence = TTTCAATCAGCCGTATGAAA Gene: ASA_2146: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| fadJ |
|
|
Gene: PE36_17982: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: AHA_2154: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: ASA_2145: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| CRON 4. | |||||||
| fadD2 |
|
|
*
Moritella sp. PE36 Site: position = -138 score = 5.265 sequence = AATCATACGACTGTTTAAAT Gene: PE36_17450: long-chain-fatty-acid--CoA ligase |
|
|
|
long-chain-fatty-acid--CoA ligase |
| CRON 5. | |||||||
| fadH |
|
|
*
Moritella sp. PE36 Site: position = -132 score = 4.35216 sequence = GATTAAAATAGCGTTTGAAA Site: position = -119 score = 4.31587 sequence = TTTGAAATGAACGATTAAAT Gene: PE36_13067: 2,4-dienoyl-CoA reductase (EC 1.3.1.34) |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -182 score = 5.01103 sequence = GTCCAAACATTTGTTTGAAA Gene: AHA_3357: 2,4-dienoyl-CoA reductase (EC 1.3.1.34) |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -81 score = 5.01103 sequence = GTCCAAACATTTGTTTGAAA Gene: ASA_0950: 2,4-dienoyl-CoA reductase (EC 1.3.1.34) |
|
2,4-dienoyl-CoA reductase (EC 1.3.1.34) |
| CRON 6. | |||||||
| psrA |
|
|
*
Moritella sp. PE36 Site: position = -81 score = 5.31882 sequence = TTTCAAACATTTGTTTACAT Site: position = -30 score = 5.58538 sequence = TTTAAAACGTTCGTTTAAAA Gene: PE36_04678: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -30 score = 5.38944 sequence = TTTTAAACATTCGTTTAAGT Gene: AHA_1345: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Aeromonas salmonicida subsp. salmonicida A449 Site: position = -19 score = 5.14055 sequence = TTTTAAACATTCGTTTTAAG Gene: ASA_1317: Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
|
Predicted transcriptional regulator for fatty acid degradation PsrA, TetR family |
| fadE1 |
|
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Gene: PE36_04673: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: AHA_1346: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: ASA_1318: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |