Regulog PsrA - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | 25 | 16 |
| Shewanella putrefaciens CN-32 | 26 | 17 |
| Shewanella sp W3-18-1 | 26 | 17 |
| Shewanella sp ANA-3 | 25 | 16 |
| Shewanella sp MR-4 | 25 | 16 |
| Shewanella sp MR-7 | 25 | 16 |
| Shewanella baltica OS155 | 26 | 17 |
| Shewanella denitrificans OS217 | 23 | 15 |
| Shewanella frigidimarina NCIMB 400 | 25 | 16 |
| Shewanella amazonensis SB2B | 23 | 15 |
| Shewanella loihica PV-4 | 25 | 17 |
| Shewanella pealeana ATCC 700345 | 24 | 17 |
| Shewanella halifaxensis HAW-EB4 | 24 | 17 |
| Shewanella piezotolerans WP3 | 24 | 17 |
| Shewanella sediminis HAW-EB3 | 27 | 18 |
| Shewanella woodyi ATCC 51908 | 24 | 17 |
| Genes | Function | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||||||
| fadD2 |
*
Shewanella oneidensis MR-1 Site: position = -63 score = 5.62202 sequence = ATCTAAACACCCGTTTGATT Gene: SO_3664: long-chain-fatty-acid--CoA ligase |
*
Shewanella putrefaciens CN-32 Site: position = -66 score = 5.50475 sequence = ATCTAAACATATGTTTGATT Gene: Sputcn32_0970: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp W3-18-1 Site: position = -65 score = 5.50475 sequence = ATCTAAACATATGTTTGATT Gene: Sputw3181_3197: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp ANA-3 Site: position = -62 score = 5.55802 sequence = ATCTAAACACTCGTTTGATT Gene: Shewana3_3231: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp MR-4 Site: position = -62 score = 5.55802 sequence = ATCTAAACACTCGTTTGATT Gene: Shewmr4_0883: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp MR-7 Site: position = -62 score = 5.55802 sequence = ATCTAAACACTCGTTTGATT Gene: Shewmr7_3139: long-chain-fatty-acid--CoA ligase |
*
Shewanella baltica OS155 Site: position = -66 score = 5.42396 sequence = ATCTAAACACCTGTTTAACT Gene: Sbal_0956: long-chain-fatty-acid--CoA ligase |
Gene: Sden_2934: long-chain-fatty-acid--CoA ligase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -55 score = 5.5014 sequence = ATCTAAACGGACGTTTGATT Gene: Sfri_3097: long-chain-fatty-acid--CoA ligase |
Gene: Sama_2897: long-chain-fatty-acid--CoA ligase |
*
Shewanella loihica PV-4 Site: position = -130 score = 5.26511 sequence = TGTTAAACGATTGTTTTATT Site: position = -70 score = 5.07459 sequence = GTCTAAACACCTGTTTGATT Gene: Shew_3084: long-chain-fatty-acid--CoA ligase |
*
Shewanella pealeana ATCC 700345 Site: position = -70 score = 5.55802 sequence = ATCTAAACGCTTGTTTGATT Gene: Spea_3322: long-chain-fatty-acid--CoA ligase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -62 score = 4.81525 sequence = gTcTAAACAGCTGTTTgAcT Gene: Shal_3395: long-chain-fatty-acid--CoA ligase |
*
Shewanella piezotolerans WP3 Site: position = -66 score = 5.66963 sequence = ATCTAAACACCTGTTTGATT Gene: swp_3965: long-chain-fatty-acid--CoA ligase |
*
Shewanella sediminis HAW-EB3 Site: position = -83 score = 5.62202 sequence = ATCTAAACGCCTGTTTGATT Gene: Ssed_3695: long-chain-fatty-acid--CoA ligase |
*
Shewanella woodyi ATCC 51908 Site: position = -95 score = 5.66963 sequence = ATCTAAACACCTGTTTGATT Gene: Swoo_3995: long-chain-fatty-acid--CoA ligase |
long-chain-fatty-acid--CoA ligase |
| CRON 2. | |||||||||||||||||
| fadD3 |
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|
*
Shewanella sediminis HAW-EB3 Site: position = -180 score = 5.4703 sequence = ATTAAAACGATCGTTTGCTT Gene: Ssed_1667: long-chain-fatty-acid--CoA ligase |
Gene: Swoo_2941: long-chain-fatty-acid--CoA ligase |
long-chain-fatty-acid--CoA ligase |
| CRON 3. | |||||||||||||||||
| fadD1 |
*
Shewanella oneidensis MR-1 Site: position = -136 score = 5.48194 sequence = ATTAAAACGCCCGTATGATT Gene: SO_2581: long-chain-fatty-acid--CoA ligase |
*
Shewanella putrefaciens CN-32 Site: position = -135 score = 5.41794 sequence = ATTAAAACGCTCGTATGATT Gene: Sputcn32_1761: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp W3-18-1 Site: position = -135 score = 5.41794 sequence = ATTAAAACGCTCGTATGATT Gene: Sputw3181_2264: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp ANA-3 Site: position = -136 score = 5.48194 sequence = ATTAAAACGCCCGTATGATT Gene: Shewana3_2386: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp MR-4 Site: position = -136 score = 5.48194 sequence = ATTAAAACGCCCGTATGATT Gene: Shewmr4_2177: long-chain-fatty-acid--CoA ligase |
*
Shewanella sp MR-7 Site: position = -136 score = 5.48194 sequence = ATTAAAACGCCCGTATGATT Gene: Shewmr7_2254: long-chain-fatty-acid--CoA ligase |
*
Shewanella baltica OS155 Site: position = -137 score = 5.41794 sequence = ATTAAAACGCTCGTATGATT Gene: Sbal_1864: long-chain-fatty-acid--CoA ligase |
*
Shewanella denitrificans OS217 Site: position = -169 score = 5.57327 sequence = ATTTAAACGGCCGTATGATT Gene: Sden_1625: long-chain-fatty-acid--CoA ligase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -145 score = 5.23496 sequence = ATTAAAACACTTGTATGACT Gene: Sfri_1733: long-chain-fatty-acid--CoA ligase |
*
Shewanella amazonensis SB2B Site: position = -120 score = 5.55443 sequence = ATTTAAACGCCCGTATGATT Gene: Sama_1934: long-chain-fatty-acid--CoA ligase |
*
Shewanella loihica PV-4 Site: position = -130 score = 5.48194 sequence = ATTAAAACGCCCGTATGATT Gene: Shew_2188: long-chain-fatty-acid--CoA ligase |
*
Shewanella pealeana ATCC 700345 Site: position = -137 score = 5.50927 sequence = ATTTAAACGACCGTATGATT Gene: Spea_2448: long-chain-fatty-acid--CoA ligase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -136 score = 5.49043 sequence = ATTTAAACGCTCGTATGATT Gene: Shal_1832: long-chain-fatty-acid--CoA ligase |
*
Shewanella piezotolerans WP3 Site: position = -134 score = 5.53803 sequence = ATTTAAACGCTTGTATGATT Gene: swp_2289: long-chain-fatty-acid--CoA ligase |
*
Shewanella sediminis HAW-EB3 Site: position = -132 score = 5.67152 sequence = ATTAAAACGCCTGTATGAAT Gene: Ssed_2523: long-chain-fatty-acid--CoA ligase |
*
Shewanella woodyi ATCC 51908 Site: position = -134 score = 5.67152 sequence = ATTAAAACGCCTGTATGAAT Gene: Swoo_2110: long-chain-fatty-acid--CoA ligase |
long-chain-fatty-acid--CoA ligase |
| CRON 4. | |||||||||||||||||
| psrA |
*
Shewanella oneidensis MR-1 Site: position = 40 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: SO_2493: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella putrefaciens CN-32 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Sputcn32_1862: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella sp W3-18-1 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Sputw3181_2147: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella sp ANA-3 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Shewana3_2155: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella sp MR-4 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Shewmr4_2050: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella sp MR-7 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Shewmr7_1925: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella baltica OS155 Site: position = -38 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Sbal_2245: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella denitrificans OS217 Site: position = -24 score = 5.984 sequence = ATTTAAACAGGTGTTTTAAA Gene: Sden_2116: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -36 score = 6.30369 sequence = ATTTAAACAGGTGTTTAAAT Gene: Sfri_1888: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella amazonensis SB2B Site: position = 7 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Sama_1816: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella loihica PV-4 Site: position = -39 score = 6.16422 sequence = ATTTAAACACACGTTTAAAT Gene: Shew_2052: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella pealeana ATCC 700345 Site: position = -39 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Spea_2339: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -25 score = 5.94489 sequence = ATTTAAACGAGTGTTTAAAA Gene: Shal_1945: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella piezotolerans WP3 Site: position = -41 score = 6.19208 sequence = ATTTAAACGAGTGTTTAAAT Gene: swp_2385: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella sediminis HAW-EB3 Site: position = -40 score = 6.00889 sequence = ATTTAAACGGGTGTTTAAAA Gene: Ssed_2066: fatty acid degradation transcriptional regulator, TetR family |
*
Shewanella woodyi ATCC 51908 Site: position = -41 score = 5.8724 sequence = ATTTAAACGAGTGTTTTAAA Gene: Swoo_2543: fatty acid degradation transcriptional regulator, TetR family |
fatty acid degradation transcriptional regulator, TetR family |
| fadE1 |
Gene: SO_2492: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sputcn32_1863: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sputw3181_2146: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Shewana3_2154: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Shewmr4_2049: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Shewmr7_1926: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sbal_2244: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sden_2115: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sfri_1889: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Sama_1815: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Shew_2051: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Spea_2338: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Shal_1946: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: swp_2386: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Ssed_2067: oxidoreductase, acyl-CoA dehydrogenase family |
Gene: Swoo_2542: oxidoreductase, acyl-CoA dehydrogenase family |
oxidoreductase, acyl-CoA dehydrogenase family |
| CRON 5. | |||||||||||||||||
| fadH |
*
Shewanella oneidensis MR-1 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Gene: SO_2419: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella putrefaciens CN-32 Site: position = -31 score = 4.9719 sequence = TTTAAATCACTTGTTTTAAA Site: position = -18 score = 5.4302 sequence = TTTTAAAAGGATGTTTGAAT Gene: Sputcn32_2077: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella sp W3-18-1 Site: position = -18 score = 5.4302 sequence = TTTTAAAAGGATGTTTGAAT Site: position = -31 score = 4.9719 sequence = TTTAAATCACTTGTTTTAAA Gene: Sputw3181_1935: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella sp ANA-3 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Gene: Shewana3_1965: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella sp MR-4 Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Gene: Shewmr4_1910: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella sp MR-7 Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Gene: Shewmr7_2068: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella baltica OS155 Site: position = -18 score = 5.4302 sequence = TTTTAAAAGGATGTTTGAAT Site: position = -31 score = 4.9719 sequence = TTTAAATCACTTGTTTTAAA Gene: Sbal_2056: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella denitrificans OS217 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Gene: Sden_1900: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -84 score = 5.26322 sequence = TAACAAACGAGCGTTTAAAT Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Gene: Sfri_2144: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella amazonensis SB2B Site: position = -18 score = 5.50322 sequence = TTTTAAAAGGGTGTTTGAAT Gene: Sama_1724: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella loihica PV-4 Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Site: position = -18 score = 5.39023 sequence = TTTAAAAAGGATGTTTAAAT Gene: Shew_1942: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella pealeana ATCC 700345 Site: position = -31 score = 5.29159 sequence = ATTAAATCACTTGTTTAAAA Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Gene: Spea_2252: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.03452 sequence = ATTGAATCACTTGTTTAAAA Gene: Shal_2030: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella piezotolerans WP3 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.29159 sequence = ATTAAATCACTTGTTTAAAA Gene: swp_2472: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella sediminis HAW-EB3 Site: position = -18 score = 5.35772 sequence = TTTAAAAAGGATGTTTGAAT Site: position = -31 score = 5.04439 sequence = TTTAAATCACTTGTTTAAAA Gene: Ssed_2310: NADP-dependent 2,4-dienoyl-CoA reductase |
*
Shewanella woodyi ATCC 51908 Site: position = -18 score = 5.4302 sequence = TTTTAAAAGGATGTTTGAAT Site: position = -31 score = 4.99075 sequence = TTTAAATCAGTTGTTTTAAA Gene: Swoo_2300: NADP-dependent 2,4-dienoyl-CoA reductase |
NADP-dependent 2,4-dienoyl-CoA reductase |
| CRON 6. | |||||||||||||||||
| Sbal_0657 |
|
*
Shewanella putrefaciens CN-32 Site: position = -42 score = 5.03552 sequence = ATTCGAACGCACGTTTAACT Gene: Sputcn32_3181: hypothetical protein |
*
Shewanella sp W3-18-1 Site: position = -42 score = 5.03552 sequence = ATTCGAACGCACGTTTAACT Gene: Sputw3181_0762: hypothetical protein |
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*
Shewanella baltica OS155 Site: position = -42 score = 5.36131 sequence = ATTCGAACACACGTTTAATT Gene: Sbal_0657: hypothetical protein |
*
Shewanella denitrificans OS217 Site: position = -46 score = 5.45103 sequence = ATTCAAGCGAGCGTTTGAAT Gene: Sden_0953: hypothetical protein |
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Gene: Swoo_2460: hypothetical protein |
hypothetical protein |
| CRON 7. | |||||||||||||||||
| SO2935 |
*
Shewanella oneidensis MR-1 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTAGCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: SO_2935: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella putrefaciens CN-32 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTATCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: Sputcn32_2396: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella sp W3-18-1 Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTATCA Gene: Sputw3181_1612: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella sp ANA-3 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTAGCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: Shewana3_1528: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella sp MR-4 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTAGCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: Shewmr4_1468: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella sp MR-7 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTAGCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: Shewmr7_1534: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella baltica OS155 Site: position = -73 score = 4.46054 sequence = TTTGAAACATGCGTTTATCA Site: position = -86 score = 4.49927 sequence = TTTCATTCATTTGTTTGAAA Gene: Sbal_2694: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella denitrificans OS217 Site: position = -73 score = 5.30323 sequence = TTTAAAACAATCGTTTACTT Gene: Sden_2473: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -73 score = 5.28206 sequence = TTTCAAACGGTCGTTTATTT Site: position = -86 score = 4.57234 sequence = TATTAATCATTTGTTTCAAA Gene: Sfri_2572: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella amazonensis SB2B Site: position = -73 score = 5.1431 sequence = TTTTAAACAGCTGTATGACT Gene: Sama_2121: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella loihica PV-4 Site: position = -74 score = 4.38445 sequence = TTTTAAACATTCGTTTCAGG Site: position = -87 score = 4.42185 sequence = AATCAGTCATTTGTTTTAAA Gene: Shew_2409: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella pealeana ATCC 700345 Site: position = -73 score = 4.87592 sequence = TTTAAAACAGCTGTTTATCA Site: position = -86 score = 4.50644 sequence = GATTAATCGTTTGTTTAAAA Gene: Spea_1649: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -73 score = 4.87592 sequence = TTTAAAACAGCTGTTTATCA Gene: Shal_2614: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella piezotolerans WP3 Site: position = -73 score = 4.95345 sequence = TTTAAAACAGCTGTTTACCA Site: position = -86 score = 5.10148 sequence = AATTAATCGTTTGTTTAAAA Gene: swp_1930: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella sediminis HAW-EB3 Site: position = -86 score = 5.0766 sequence = AATTAATCATTTGTTTTAAA Gene: Ssed_1692: oxidoreductase, short-chain dehydrogenase/reductase family |
*
Shewanella woodyi ATCC 51908 Site: position = -86 score = 5.0766 sequence = AATTAATCATTTGTTTTAAA Gene: Swoo_2905: oxidoreductase, short-chain dehydrogenase/reductase family |
oxidoreductase, short-chain dehydrogenase/reductase family |
| CRON 8. | |||||||||||||||||
| SO0080 |
Gene: SO_0080: thioesterase superfamily protein |
Gene: Sputcn32_0066: thioesterase superfamily protein |
Gene: Sputw3181_4011: thioesterase superfamily protein |
Gene: Shewana3_0085: thioesterase superfamily protein |
Gene: Shewmr4_0084: thioesterase superfamily protein |
Gene: Shewmr7_0081: thioesterase superfamily protein |
Gene: Sbal_4269: thioesterase superfamily protein |
*
Shewanella denitrificans OS217 Site: position = -20 score = 5.26322 sequence = TACCAAACGAGCGTTTAAAT Gene: Sden_0074: thioesterase superfamily protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -44 score = 6.05011 sequence = ATTTAAACAAGCGTTTAATT Gene: Sfri_3968: thioesterase superfamily protein |
*
Shewanella amazonensis SB2B Site: position = -21 score = 5.44705 sequence = TGTTAAACAATCGTTTGAAT Gene: Sama_0073: thioesterase superfamily protein |
*
Shewanella loihica PV-4 Site: position = -35 score = 5.35843 sequence = AACTAAACACTTGTTTGAAA Gene: Shew_3772: thioesterase superfamily protein |
*
Shewanella pealeana ATCC 700345 Site: position = -70 score = 5.85477 sequence = AGTTAAACAGCCGTTTAAAT Gene: Spea_4183: thioesterase superfamily protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -47 score = 5.58552 sequence = AATTAAACAGCTGTTTAAAC Gene: Shal_0066: thioesterase superfamily protein |
*
Shewanella piezotolerans WP3 Site: position = -49 score = 5.75672 sequence = AATCAAACAACCGTTTGAAA Gene: swp_0119: thioesterase superfamily protein |
*
Shewanella sediminis HAW-EB3 Site: position = -32 score = 5.75825 sequence = AGTTAAACAACCGTTTGAAT Gene: Ssed_4456: thioesterase superfamily protein |
*
Shewanella woodyi ATCC 51908 Site: position = -50 score = 5.67902 sequence = AGTCAAACGCATGTTTGAAT Gene: Swoo_4857: thioesterase superfamily protein |
thioesterase superfamily protein |
| CRON 9. | |||||||||||||||||
| SO0881 |
*
Shewanella oneidensis MR-1 Site: position = -78 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: SO_0881: conserved hypothetical protein |
*
Shewanella putrefaciens CN-32 Site: position = -77 score = 5.87674 sequence = ATTAAAACGTATGTTTAATT Gene: Sputcn32_3121: conserved hypothetical protein |
*
Shewanella sp W3-18-1 Site: position = -77 score = 5.87674 sequence = ATTAAAACGTATGTTTAATT Gene: Sputw3181_0822: conserved hypothetical protein |
*
Shewanella sp ANA-3 Site: position = -78 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: Shewana3_3397: conserved hypothetical protein |
*
Shewanella sp MR-4 Site: position = -78 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: Shewmr4_0737: conserved hypothetical protein |
*
Shewanella sp MR-7 Site: position = -78 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: Shewmr7_3285: conserved hypothetical protein |
*
Shewanella baltica OS155 Site: position = -155 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: Sbal_3483: conserved hypothetical protein |
Gene: Sden_3185: conserved hypothetical protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -81 score = 6.0912 sequence = ATTTAAACGTATGTTTAAAT Gene: Sfri_3287: conserved hypothetical protein |
*
Shewanella amazonensis SB2B Site: position = -151 score = 5.73477 sequence = AATAAAACGTATGTTTAATT Gene: Sama_2999: conserved hypothetical protein |
*
Shewanella loihica PV-4 Site: position = -116 score = 5.99736 sequence = ATTAAAACATGTGTTTAATT Gene: Shew_0590: conserved hypothetical protein |
*
Shewanella pealeana ATCC 700345 Site: position = -145 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Site: position = -98 score = 4.69214 sequence = TTTTAAACTGGTCTTTTATT Gene: Spea_3504: conserved hypothetical protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -146 score = 5.87674 sequence = ATTAAAACGTATGTTTAATT Gene: Shal_3598: conserved hypothetical protein |
*
Shewanella piezotolerans WP3 Site: position = -175 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: swp_0761: conserved hypothetical protein |
*
Shewanella sediminis HAW-EB3 Site: position = -260 score = 5.94976 sequence = ATTAAAACGTGTGTTTAATT Gene: Ssed_3864: conserved hypothetical protein |
Gene: Swoo_0671: conserved hypothetical protein |
conserved hypothetical protein |
| SO0882 |
Gene: SO_0882: oxidoreductase, GMC family |
Gene: Sputcn32_3120: oxidoreductase, GMC family |
Gene: Sputw3181_0823: oxidoreductase, GMC family |
Gene: Shewana3_3396: oxidoreductase, GMC family |
Gene: Shewmr4_0738: oxidoreductase, GMC family |
Gene: Shewmr7_3284: oxidoreductase, GMC family |
Gene: Sbal_3482: oxidoreductase, GMC family |
Gene: Sden_3184: oxidoreductase, GMC family |
Gene: Sfri_3286: oxidoreductase, GMC family |
Gene: Sama_2998: oxidoreductase, GMC family |
Gene: Shew_0591: oxidoreductase, GMC family |
Gene: Spea_3503: oxidoreductase, GMC family |
Gene: Shal_3597: oxidoreductase, GMC family |
Gene: swp_0762: oxidoreductase, GMC family |
Gene: Ssed_3863: oxidoreductase, GMC family |
Gene: Swoo_0672: oxidoreductase, GMC family |
oxidoreductase, GMC family |
| CRON 10. | |||||||||||||||||
| fadE3 |
|
|
|
|
|
|
|
|
|
|
*
Shewanella loihica PV-4 Site: position = -199 score = 4.92959 sequence = ATTCAAACAATTATATGAAA Site: position = -186 score = 5.52097 sequence = TATGAAACAAGTGTTTAAAT Gene: Shew_3003: acyl-CoA dehydrogenase |
*
Shewanella pealeana ATCC 700345 Site: position = -99 score = 5.62452 sequence = ATCCAAACGCACGTTTAAAT Gene: Spea_1234: acyl-CoA dehydrogenase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -98 score = 5.69999 sequence = ATCCAAACAAGCGTTTAAAT Gene: Shal_1266: acyl-CoA dehydrogenase |
*
Shewanella piezotolerans WP3 Site: position = -98 score = 5.75136 sequence = ATCTAAACAACCGTTTAAAT Gene: swp_3422: acyl-CoA dehydrogenase |
|
*
Shewanella woodyi ATCC 51908 Site: position = -98 score = 6.16202 sequence = ATTCAAACAATTGTTTAAAT Gene: Swoo_1504: acyl-CoA dehydrogenase |
acyl-CoA dehydrogenase |
| CRON 11. | |||||||||||||||||
| etfB |
*
Shewanella oneidensis MR-1 Site: position = -121 score = 5.38885 sequence = ATGCAAACAGGCGTTTGACT Gene: SO_3145: electron transfer flavoprotein, beta subunit |
*
Shewanella putrefaciens CN-32 Site: position = -121 score = 5.20103 sequence = ATGCAAACAGTCGTTTGAGT Gene: Sputcn32_2511: electron transfer flavoprotein, beta subunit |
*
Shewanella sp W3-18-1 Site: position = -121 score = 5.20103 sequence = ATGCAAACAGTCGTTTGAGT Gene: Sputw3181_1497: electron transfer flavoprotein, beta subunit |
*
Shewanella sp ANA-3 Site: position = -121 score = 5.24618 sequence = ATGCAAACAGGCGTTTGAGT Gene: Shewana3_1405: electron transfer flavoprotein, beta subunit |
*
Shewanella sp MR-4 Site: position = -121 score = 5.24618 sequence = ATGCAAACAGGCGTTTGAGT Gene: Shewmr4_1352: electron transfer flavoprotein, beta subunit |
*
Shewanella sp MR-7 Site: position = -121 score = 5.24618 sequence = ATGCAAACAGGCGTTTGAGT Gene: Shewmr7_1417: electron transfer flavoprotein, beta subunit |
*
Shewanella baltica OS155 Site: position = -121 score = 5.38885 sequence = ATGCAAACAGGCGTTTGACT Gene: Sbal_2847: electron transfer flavoprotein, beta subunit |
*
Shewanella denitrificans OS217 Site: position = -120 score = 5.11017 sequence = ATGCAAACGCTTGTTTAACA Gene: Sden_2539: electron transfer flavoprotein, beta subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -122 score = 5.37621 sequence = ATGTAAACAGTCGTTTGACT Gene: Sfri_2748: electron transfer flavoprotein, beta subunit |
Gene: Sama_1169: electron transfer flavoprotein, beta subunit |
Gene: Shew_2584: electron transfer flavoprotein, beta subunit |
Gene: Spea_2855: electron transfer flavoprotein, beta subunit |
Gene: Shal_2945: electron transfer flavoprotein, beta subunit |
Gene: swp_3472: electron transfer flavoprotein, beta subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -120 score = 5.63872 sequence = ATACAAACGGTCGTTTGAAT Gene: Ssed_1445: electron transfer flavoprotein, beta subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -123 score = 5.43667 sequence = ATACAAACGGGCGTTTGAAA Gene: Swoo_3236: electron transfer flavoprotein, beta subunit |
electron transfer flavoprotein, beta subunit |
| etfA |
Gene: SO_3144: electron transfer flavoprotein, alpha subunit |
Gene: Sputcn32_2510: electron transfer flavoprotein, alpha subunit |
Gene: Sputw3181_1498: electron transfer flavoprotein, alpha subunit |
Gene: Shewana3_1406: electron transfer flavoprotein, alpha subunit |
Gene: Shewmr4_1353: electron transfer flavoprotein, alpha subunit |
Gene: Shewmr7_1418: electron transfer flavoprotein, alpha subunit |
Gene: Sbal_2846: electron transfer flavoprotein, alpha subunit |
Gene: Sden_2538: electron transfer flavoprotein, alpha subunit |
Gene: Sfri_2747: electron transfer flavoprotein, alpha subunit |
Gene: Sama_1170: electron transfer flavoprotein, alpha subunit |
Gene: Shew_2583: electron transfer flavoprotein, alpha subunit |
Gene: Spea_2854: electron transfer flavoprotein, alpha subunit |
Gene: Shal_2944: electron transfer flavoprotein, alpha subunit |
Gene: swp_3471: electron transfer flavoprotein, alpha subunit |
Gene: Ssed_1446: electron transfer flavoprotein, alpha subunit |
Gene: Swoo_3235: electron transfer flavoprotein, alpha subunit |
electron transfer flavoprotein, alpha subunit |
| CRON 12. | |||||||||||||||||
| etfD |
*
Shewanella oneidensis MR-1 Site: position = -70 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: SO_4453: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella putrefaciens CN-32 Site: position = -70 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Sputcn32_0388: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella sp W3-18-1 Site: position = -70 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Sputw3181_0242: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella sp ANA-3 Site: position = -74 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Shewana3_0273: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella sp MR-4 Site: position = -74 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Shewmr4_0272: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella sp MR-7 Site: position = -74 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Shewmr7_3749: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella baltica OS155 Site: position = -70 score = 5.36478 sequence = AATAAAACGCCCGTTTACAA Gene: Sbal_0283: electron-transferring-flavoprotein dehydrogenase |
Gene: Sden_0100: electron-transferring-flavoprotein dehydrogenase |
Gene: Sfri_0081: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella amazonensis SB2B Site: position = -51 score = 5.41239 sequence = TATAAAACACCCGTTTACAT Gene: Sama_3523: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella loihica PV-4 Site: position = -47 score = 5.71207 sequence = AATAAAACACCCGTTTCAAT Gene: Shew_0086: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella pealeana ATCC 700345 Site: position = -80 score = 5.12898 sequence = ATTAAAACACCCGTTTATAG Gene: Spea_4121: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -79 score = 5.12898 sequence = ATTAAAACACCCGTTTATAG Gene: Shal_0121: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella piezotolerans WP3 Site: position = -76 score = 5.12898 sequence = ATTAAAACACCCGTTTATAG Gene: swp_5010: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella sediminis HAW-EB3 Site: position = -49 score = 5.16839 sequence = ATTAAAACACCCGTTTAACG Gene: Ssed_4403: electron-transferring-flavoprotein dehydrogenase |
*
Shewanella woodyi ATCC 51908 Site: position = -45 score = 5.16839 sequence = ATTAAAACACCCGTTTAACG Gene: Swoo_4794: electron-transferring-flavoprotein dehydrogenase |
electron-transferring-flavoprotein dehydrogenase |
| CRON 13. | |||||||||||||||||
| sdhC |
*
Shewanella oneidensis MR-1 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: SO_1927: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella putrefaciens CN-32 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Sputcn32_2273: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella sp W3-18-1 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Sputw3181_1735: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella sp ANA-3 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Shewana3_1706: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella sp MR-4 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Shewmr4_1631: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella sp MR-7 Site: position = -331 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Shewmr7_1706: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella baltica OS155 Site: position = -330 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Sbal_2519: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella denitrificans OS217 Site: position = -374 score = 5.57696 sequence = ATTTAAATAAGCGTTTAATT Gene: Sden_2187: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -324 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Sfri_2347: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella amazonensis SB2B Site: position = -327 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Sama_1423: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella loihica PV-4 Site: position = -329 score = 5.76654 sequence = ATTTAAATAAGTGTTTAAAT Gene: Shew_1651: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -351 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Spea_1784: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -350 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: Shal_2493: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella piezotolerans WP3 Site: position = -284 score = 5.71894 sequence = ATTTAAATAAGCGTTTAAAT Gene: swp_2955: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -349 score = 5.76654 sequence = ATTTAAATAAGTGTTTAAAT Gene: Ssed_2818: succinate dehydrogenase, cytochrome b556 subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -351 score = 5.73778 sequence = ATTTAAATAACCGTTTAAAT Gene: Swoo_1833: succinate dehydrogenase, cytochrome b556 subunit |
succinate dehydrogenase, cytochrome b556 subunit |
| sdhD |
Gene: SO_1927.1: succinate dehydrogenase subunit D |
Gene: Sputcn32_2272: succinate dehydrogenase subunit D |
Gene: Sputw3181_1736: succinate dehydrogenase subunit D |
Gene: Shewana3_1707: succinate dehydrogenase subunit D |
Gene: Shewmr4_1632: succinate dehydrogenase subunit D |
Gene: Shewmr7_1707: succinate dehydrogenase subunit D |
Gene: Sbal_2518: succinate dehydrogenase subunit D |
Gene: Sden_2186: succinate dehydrogenase subunit D |
Gene: Sfri_2346: succinate dehydrogenase subunit D |
Gene: Sama_1424: succinate dehydrogenase subunit D |
Gene: Shew_1652: succinate dehydrogenase subunit D |
Gene: Spea_1785: succinate dehydrogenase subunit D |
Gene: Shal_2492: succinate dehydrogenase subunit D |
Gene: swp_2953: succinate dehydrogenase subunit D |
Gene: Ssed_2817: succinate dehydrogenase subunit D |
Gene: Swoo_1834: succinate dehydrogenase subunit D |
succinate dehydrogenase subunit D |
| sdhA |
Gene: SO_1928: succinate dehydrogenase, flavoprotein subunit |
Gene: Sputcn32_2271: succinate dehydrogenase, flavoprotein subunit |
Gene: Sputw3181_1737: succinate dehydrogenase, flavoprotein subunit |
Gene: Shewana3_1708: succinate dehydrogenase, flavoprotein subunit |
Gene: Shewmr4_1633: succinate dehydrogenase, flavoprotein subunit |
Gene: Shewmr7_1708: succinate dehydrogenase, flavoprotein subunit |
Gene: Sbal_2517: succinate dehydrogenase, flavoprotein subunit |
Gene: Sden_2185: succinate dehydrogenase, flavoprotein subunit |
Gene: Sfri_2345: succinate dehydrogenase, flavoprotein subunit |
Gene: Sama_1425: succinate dehydrogenase, flavoprotein subunit |
Gene: Shew_1653: succinate dehydrogenase, flavoprotein subunit |
Gene: Spea_1786: succinate dehydrogenase, flavoprotein subunit |
Gene: Shal_2491: succinate dehydrogenase, flavoprotein subunit |
Gene: swp_2952: succinate dehydrogenase, flavoprotein subunit |
Gene: Ssed_2816: succinate dehydrogenase, flavoprotein subunit |
Gene: Swoo_1835: succinate dehydrogenase, flavoprotein subunit |
succinate dehydrogenase, flavoprotein subunit |
| sdhB |
Gene: SO_1929: succinate dehydrogenase, iron-sulfur protein |
Gene: Sputcn32_2270: succinate dehydrogenase, iron-sulfur protein |
Gene: Sputw3181_1738: succinate dehydrogenase, iron-sulfur protein |
Gene: Shewana3_1709: succinate dehydrogenase, iron-sulfur protein |
Gene: Shewmr4_1634: succinate dehydrogenase, iron-sulfur protein |
Gene: Shewmr7_1709: succinate dehydrogenase, iron-sulfur protein |
Gene: Sbal_2516: succinate dehydrogenase, iron-sulfur protein |
Gene: Sden_2184: succinate dehydrogenase, iron-sulfur protein |
Gene: Sfri_2344: succinate dehydrogenase, iron-sulfur protein |
Gene: Sama_1426: succinate dehydrogenase, iron-sulfur protein |
Gene: Shew_1654: succinate dehydrogenase, iron-sulfur protein |
Gene: Spea_1787: succinate dehydrogenase, iron-sulfur protein |
Gene: Shal_2490: succinate dehydrogenase, iron-sulfur protein |
Gene: swp_2950: succinate dehydrogenase, iron-sulfur protein |
Gene: Ssed_2815: succinate dehydrogenase, iron-sulfur protein |
Gene: Swoo_1836: succinate dehydrogenase, iron-sulfur protein |
succinate dehydrogenase, iron-sulfur protein |
| CRON 14. | |||||||||||||||||
| aceB |
*
Shewanella oneidensis MR-1 Site: position = -507 score = 5.58716 sequence = AATGAAACGTATGTTTGAAT Gene: SO_1483: malate synthase A |
*
Shewanella putrefaciens CN-32 Site: position = -439 score = 5.94886 sequence = AATTAAACGGTCGTTTTAAT Gene: Sputcn32_1238: malate synthase A |
*
Shewanella sp W3-18-1 Site: position = -438 score = 5.94886 sequence = AATTAAACGGTCGTTTTAAT Gene: Sputw3181_2866: malate synthase A |
*
Shewanella sp ANA-3 Site: position = -507 score = 6.00496 sequence = AATTAAACGATTGTTTAAAT Gene: Shewana3_2943: malate synthase A |
*
Shewanella sp MR-4 Site: position = -507 score = 5.17688 sequence = AGTTAAACGAGTGTTTAAAC Gene: Shewmr4_2767: malate synthase A |
*
Shewanella sp MR-7 Site: position = -507 score = 5.77192 sequence = AGTTAAACGAGTGTTTAAAT Gene: Shewmr7_2845: malate synthase A |
*
Shewanella baltica OS155 Site: position = -515 score = 5.94886 sequence = AATAAAACGGTCGTTTAAAT Gene: Sbal_1316: malate synthase A |
*
Shewanella denitrificans OS217 Site: position = -470 score = 5.3213 sequence = ATTAAAACGGTCGTTTGATG Gene: Sden_1245: malate synthase A |
*
Shewanella frigidimarina NCIMB 400 Site: position = -592 score = 5.93885 sequence = TTTAAAACAGTTGTTTAAAT Gene: Sfri_1101: malate synthase A |
*
Shewanella amazonensis SB2B Site: position = -499 score = 5.90215 sequence = ATTAAAACGTGCGTTTAATT Gene: Sama_2381: malate synthase A |
*
Shewanella loihica PV-4 Site: position = -527 score = 5.94265 sequence = ATTAAAACGCGCGTTTGATT Gene: Shew_1275: malate synthase A |
*
Shewanella pealeana ATCC 700345 Site: position = -550 score = 5.70939 sequence = ATTGAAACGTTCGTTTGAAT Gene: Spea_1290: malate synthase A |
*
Shewanella halifaxensis HAW-EB4 Site: position = -592 score = 5.58337 sequence = GTTTAAACGGTTGTTTGAAT Gene: Shal_1352: malate synthase A |
*
Shewanella piezotolerans WP3 Site: position = -547 score = 6.06896 sequence = ATTTAAACGACTGTTTAATT Gene: swp_1433: malate synthase A |
*
Shewanella sediminis HAW-EB3 Site: position = -506 score = 5.32169 sequence = ATTGAAACGGTCGTATGAAT Gene: Ssed_1414: malate synthase A |
*
Shewanella woodyi ATCC 51908 Site: position = -536 score = 5.26749 sequence = ATTGAAACGCTTGTTTAAAC Gene: Swoo_1528: malate synthase A |
malate synthase A |
| aceA |
Gene: SO_1484: isocitrate lyase |
Gene: Sputcn32_1239: isocitrate lyase |
Gene: Sputw3181_2865: isocitrate lyase |
Gene: Shewana3_2942: isocitrate lyase |
Gene: Shewmr4_2766: isocitrate lyase |
Gene: Shewmr7_2844: isocitrate lyase |
Gene: Sbal_1317: isocitrate lyase |
Gene: Sden_1246: isocitrate lyase |
Gene: Sfri_1102: isocitrate lyase |
Gene: Sama_2380: isocitrate lyase |
Gene: Shew_1276: isocitrate lyase |
|
|
|
Gene: Ssed_1415: isocitrate lyase |
|
isocitrate lyase |
| CRON 15. | |||||||||||||||||
| acdH |
*
Shewanella oneidensis MR-1 Site: position = -41 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: SO_2395: acyl-CoA dehydrogenase family protein |
*
Shewanella putrefaciens CN-32 Site: position = -41 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Sputcn32_2035: acyl-CoA dehydrogenase family protein |
*
Shewanella sp W3-18-1 Site: position = -41 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Sputw3181_1978: acyl-CoA dehydrogenase family protein |
*
Shewanella sp ANA-3 Site: position = -41 score = 6.18605 sequence = ATTAAAACAACTGTTTAAAT Gene: Shewana3_1984: acyl-CoA dehydrogenase family protein |
*
Shewanella sp MR-4 Site: position = -41 score = 6.18605 sequence = ATTAAAACAACTGTTTAAAT Gene: Shewmr4_1931: acyl-CoA dehydrogenase family protein |
*
Shewanella sp MR-7 Site: position = -41 score = 6.18605 sequence = ATTAAAACAACTGTTTAAAT Gene: Shewmr7_2047: acyl-CoA dehydrogenase family protein |
*
Shewanella baltica OS155 Site: position = -41 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Sbal_2077: acyl-CoA dehydrogenase family protein |
*
Shewanella denitrificans OS217 Site: position = -39 score = 6.10682 sequence = ATTAAAACACATGTTTGAAT Gene: Sden_1761: acyl-CoA dehydrogenase family protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -40 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Sfri_2115: acyl-CoA dehydrogenase family protein |
*
Shewanella amazonensis SB2B Site: position = -40 score = 5.92898 sequence = ATTGAAACAACTGTTTAAAT Gene: Sama_1743: acyl-CoA dehydrogenase family protein |
*
Shewanella loihica PV-4 Site: position = -41 score = 6.06595 sequence = ATTAAAACGACTGTTTTAAT Gene: Shew_1961: acyl-CoA dehydrogenase family protein |
*
Shewanella pealeana ATCC 700345 Site: position = -40 score = 5.68179 sequence = TTTGAAACAACTGTTTAAAT Gene: Spea_2081: acyl-CoA dehydrogenase family protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -40 score = 5.68179 sequence = TTTGAAACAACTGTTTAAAT Gene: Shal_2054: acyl-CoA dehydrogenase family protein |
*
Shewanella piezotolerans WP3 Site: position = -40 score = 5.90112 sequence = ATTGAAACATCTGTTTAAAT Gene: swp_2502: acyl-CoA dehydrogenase family protein |
*
Shewanella sediminis HAW-EB3 Site: position = -40 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Ssed_2292: acyl-CoA dehydrogenase family protein |
*
Shewanella woodyi ATCC 51908 Site: position = -40 score = 6.11356 sequence = ATTAAAACAACTGTTTTAAT Gene: Swoo_2323: acyl-CoA dehydrogenase family protein |
acyl-CoA dehydrogenase family protein |
| CRON 16. | |||||||||||||||||
| gltA |
*
Shewanella oneidensis MR-1 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: SO_1926: citrate synthase |
*
Shewanella putrefaciens CN-32 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Sputcn32_2274: citrate synthase |
*
Shewanella sp W3-18-1 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Sputw3181_1734: citrate synthase |
*
Shewanella sp ANA-3 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Shewana3_1705: citrate synthase |
*
Shewanella sp MR-4 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Shewmr4_1630: citrate synthase |
*
Shewanella sp MR-7 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Shewmr7_1705: citrate synthase |
*
Shewanella baltica OS155 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Sbal_2520: citrate synthase |
*
Shewanella denitrificans OS217 Site: position = -50 score = 5.57696 sequence = AATTAAACGCTTATTTAAAT Gene: Sden_2189: citrate synthase |
*
Shewanella frigidimarina NCIMB 400 Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Sfri_2348: citrate synthase |
*
Shewanella amazonensis SB2B Site: position = -105 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Sama_1422: citrate synthase |
*
Shewanella loihica PV-4 Site: position = -103 score = 5.76654 sequence = ATTTAAACACTTATTTAAAT Gene: Shew_1650: citrate synthase |
*
Shewanella pealeana ATCC 700345 Site: position = -101 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Spea_1783: citrate synthase |
*
Shewanella halifaxensis HAW-EB4 Site: position = -101 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: Shal_2494: citrate synthase |
*
Shewanella piezotolerans WP3 Site: position = -101 score = 5.71894 sequence = ATTTAAACGCTTATTTAAAT Gene: swp_2957: citrate synthase |
*
Shewanella sediminis HAW-EB3 Site: position = -100 score = 5.76654 sequence = ATTTAAACACTTATTTAAAT Gene: Ssed_2819: citrate synthase |
*
Shewanella woodyi ATCC 51908 Site: position = -100 score = 5.73778 sequence = ATTTAAACGGTTATTTAAAT Gene: Swoo_1832: citrate synthase |
citrate synthase |
| CRON 17. | |||||||||||||||||
| echH |
*
Shewanella oneidensis MR-1 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: SO_3908: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella putrefaciens CN-32 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: Sputcn32_0764: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella sp W3-18-1 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: Sputw3181_3411: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella sp ANA-3 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: Shewana3_0721: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella sp MR-4 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: Shewmr4_3240: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella sp MR-7 Site: position = -80 score = 6.05618 sequence = AATTAAACATCTGTTTGAAT Gene: Shewmr7_0749: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella baltica OS155 Site: position = -79 score = 6.14805 sequence = AATTAAACAGCTGTTTGAAT Gene: Sbal_3582: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella denitrificans OS217 Site: position = -81 score = 6.05618 sequence = AATTAAACAGATGTTTGAAT Gene: Sden_3229: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella frigidimarina NCIMB 400 Site: position = -81 score = 5.778 sequence = AGTTAAACAGATGTTTGAAT Gene: Sfri_3336: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella amazonensis SB2B Site: position = -77 score = 6.03734 sequence = AATTAAACATGTGTTTGAAT Gene: Sama_3052: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella loihica PV-4 Site: position = -80 score = 5.81555 sequence = AATTAAACGCGTGTTTGAAA Gene: Shew_0540: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella pealeana ATCC 700345 Site: position = -79 score = 5.80586 sequence = AGTTAAACAGTTGTTTGAAT Gene: Spea_3567: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella halifaxensis HAW-EB4 Site: position = -79 score = 5.21082 sequence = GGTTAAACAGTTGTTTGAAT Gene: Shal_3661: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella piezotolerans WP3 Site: position = -81 score = 5.55866 sequence = TGTTAAACAGTTGTTTGAAT Gene: swp_0735: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella sediminis HAW-EB3 Site: position = -78 score = 6.01759 sequence = AATTAAACGCTTGTTTGAAT Gene: Ssed_0770: enoyl-CoA hydratase/isomerase family protein |
*
Shewanella woodyi ATCC 51908 Site: position = -78 score = 6.0652 sequence = AATTAAACACTTGTTTGAAT Gene: Swoo_4199: enoyl-CoA hydratase/isomerase family protein |
enoyl-CoA hydratase/isomerase family protein |
| CRON 18. | |||||||||||||||||
| fadE2 |
*
Shewanella oneidensis MR-1 Site: position = -157 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: SO_2536: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella putrefaciens CN-32 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Sputcn32_1791: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella sp W3-18-1 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Sputw3181_2234: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella sp ANA-3 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Shewana3_2323: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella sp MR-4 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Shewmr4_2146: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella sp MR-7 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Shewmr7_2223: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella baltica OS155 Site: position = -156 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Sbal_2306: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella denitrificans OS217 Site: position = -150 score = 5.66762 sequence = TTTTAAACAATTGTTTGAAA Gene: Sden_1764: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella frigidimarina NCIMB 400 Site: position = -150 score = 5.91482 sequence = ATTTAAACAATTGTTTGAAA Gene: Sfri_1869: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella amazonensis SB2B Site: position = -149 score = 5.88696 sequence = ATTTAAACATTTGTTTGAAA Gene: Sama_1870: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella loihica PV-4 Site: position = -155 score = 5.49466 sequence = AGTTAAACAATTGTTTGAAA Gene: Shew_2108: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella pealeana ATCC 700345 Site: position = -121 score = 4.8415 sequence = AAATTAACGAACGTTTAAAT Site: position = -154 score = 5.74498 sequence = AATTAAACATTTGTTTGAAA Gene: Spea_2393: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella halifaxensis HAW-EB4 Site: position = -154 score = 6.0247 sequence = ATTTAAACATTTGTTTAATT Gene: Shal_1890: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella piezotolerans WP3 Site: position = -181 score = 5.88696 sequence = ATTTAAACATTTGTTTGAAA Gene: swp_2312: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella sediminis HAW-EB3 Site: position = -156 score = 5.59215 sequence = TTTTAAACGTTTGTTTGAAA Gene: Ssed_1999: oxidoreductase, acyl-CoA dehydrogenase family |
*
Shewanella woodyi ATCC 51908 Site: position = -158 score = 5.79938 sequence = ATTTAAACGTTTGTTTTAAA Gene: Swoo_2604: oxidoreductase, acyl-CoA dehydrogenase family |
oxidoreductase, acyl-CoA dehydrogenase family |
| CRON 19. | |||||||||||||||||
| fadI |
*
Shewanella oneidensis MR-1 Site: position = -163 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: SO_3089: fatty oxidation complex, beta subunit |
*
Shewanella putrefaciens CN-32 Site: position = -168 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Sputcn32_2460: fatty oxidation complex, beta subunit |
*
Shewanella sp W3-18-1 Site: position = -168 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Sputw3181_1548: fatty oxidation complex, beta subunit |
*
Shewanella sp ANA-3 Site: position = -167 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Shewana3_1460: fatty oxidation complex, beta subunit |
*
Shewanella sp MR-4 Site: position = -167 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Shewmr4_1407: fatty oxidation complex, beta subunit |
*
Shewanella sp MR-7 Site: position = -167 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Shewmr7_1472: fatty oxidation complex, beta subunit |
*
Shewanella baltica OS155 Site: position = -168 score = 5.42243 sequence = AAACAAACAGGTGTTTAAAA Gene: Sbal_2761: fatty oxidation complex, beta subunit |
*
Shewanella denitrificans OS217 Site: position = -141 score = 5.40734 sequence = AAATAAACGGGTGTTTAAAA Gene: Sden_1529: fatty oxidation complex, beta subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -136 score = 5.37965 sequence = TTGTAAACGCCTGTTTAAAA Gene: Sfri_2677: fatty oxidation complex, beta subunit |
*
Shewanella amazonensis SB2B Site: position = -144 score = 5.57794 sequence = ATGCAAACAAGTGTTTAAAA Gene: Sama_2168: fatty oxidation complex, beta subunit |
*
Shewanella loihica PV-4 Site: position = -166 score = 5.42243 sequence = AACCAAACAGGTGTTTAAAA Gene: Shew_2426: fatty oxidation complex, beta subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -148 score = 5.35843 sequence = AAACAAACAAGTGTTTAAAA Gene: Spea_2599: fatty oxidation complex, beta subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -151 score = 5.35843 sequence = AAACAAACAAGTGTTTAAAA Gene: Shal_2671: fatty oxidation complex, beta subunit |
*
Shewanella piezotolerans WP3 Site: position = -154 score = 5.35843 sequence = AAACAAACAAGTGTTTAAAA Gene: swp_3140: fatty oxidation complex, beta subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -183 score = 5.37727 sequence = AACCAAACAACTGTTTAAAA Gene: Ssed_1628: fatty oxidation complex, beta subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -170 score = 5.35843 sequence = AACCAAACAAGTGTTTAAAA Gene: Swoo_3027: fatty oxidation complex, beta subunit |
fatty oxidation complex, beta subunit |
| fadJ |
Gene: SO_3088: fatty oxidation complex, alpha subunit |
Gene: Sputcn32_2459: fatty oxidation complex, alpha subunit |
Gene: Sputw3181_1549: fatty oxidation complex, alpha subunit |
Gene: Shewana3_1461: fatty oxidation complex, alpha subunit |
Gene: Shewmr4_1408: fatty oxidation complex, alpha subunit |
Gene: Shewmr7_1473: fatty oxidation complex, alpha subunit |
Gene: Sbal_2760: fatty oxidation complex, alpha subunit |
Gene: Sden_1530: fatty oxidation complex, alpha subunit |
Gene: Sfri_2676: fatty oxidation complex, alpha subunit |
Gene: Sama_2167: fatty oxidation complex, alpha subunit |
Gene: Shew_2425: fatty oxidation complex, alpha subunit |
Gene: Spea_2598: fatty oxidation complex, alpha subunit |
Gene: Shal_2670: fatty oxidation complex, alpha subunit |
Gene: swp_3139: fatty oxidation complex, alpha subunit |
Gene: Ssed_1629: fatty oxidation complex, alpha subunit |
Gene: Swoo_3026: fatty oxidation complex, alpha subunit |
fatty oxidation complex, alpha subunit |
| CRON 20. | |||||||||||||||||
| fadB |
*
Shewanella oneidensis MR-1 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: SO_0021: fatty oxidation complex, alpha subunit |
*
Shewanella putrefaciens CN-32 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Sputcn32_0013: fatty oxidation complex, alpha subunit |
*
Shewanella sp W3-18-1 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Sputw3181_0013: fatty oxidation complex, alpha subunit |
*
Shewanella sp ANA-3 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Shewana3_0024: fatty oxidation complex, alpha subunit |
*
Shewanella sp MR-4 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Shewmr4_0018: fatty oxidation complex, alpha subunit |
*
Shewanella sp MR-7 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Shewmr7_0016: fatty oxidation complex, alpha subunit |
*
Shewanella baltica OS155 Site: position = -162 score = 6.06896 sequence = AATTAAACAGTCGTTTAAAT Gene: Sbal_0021: fatty oxidation complex, alpha subunit |
*
Shewanella denitrificans OS217 Site: position = -149 score = 6.08535 sequence = AATTAAACGGCCGTTTAAAT Gene: Sden_0015: fatty oxidation complex, alpha subunit |
*
Shewanella frigidimarina NCIMB 400 Site: position = -161 score = 6.08535 sequence = AATTAAACGGCCGTTTAAAT Gene: Sfri_0013: fatty oxidation complex, alpha subunit |
*
Shewanella amazonensis SB2B Site: position = -145 score = 5.88486 sequence = AATTAAACGATCGTTTTAAT Gene: Sama_0032: fatty oxidation complex, alpha subunit |
*
Shewanella loihica PV-4 Site: position = -161 score = 6.09772 sequence = AATTAAACAAGTGTTTAAAT Gene: Shew_0019: fatty oxidation complex, alpha subunit |
*
Shewanella pealeana ATCC 700345 Site: position = -168 score = 5.56178 sequence = AACTAAACGGTCGTTTAAAT Gene: Spea_0018: fatty oxidation complex, alpha subunit |
*
Shewanella halifaxensis HAW-EB4 Site: position = -168 score = 5.52926 sequence = AACCAAACGACCGTTTAAAT Gene: Shal_0016: fatty oxidation complex, alpha subunit |
*
Shewanella piezotolerans WP3 Site: position = -161 score = 5.53115 sequence = ATTCGAACACTCGTTTAAAT Gene: swp_0035: fatty oxidation complex, alpha subunit |
*
Shewanella sediminis HAW-EB3 Site: position = -228 score = 6.08159 sequence = AATCAAACACCCGTTTAAAT Gene: Ssed_0023: fatty oxidation complex, alpha subunit |
*
Shewanella woodyi ATCC 51908 Site: position = -166 score = 6.0652 sequence = AATCAAACAAGTGTTTAAAT Gene: Swoo_0021: fatty oxidation complex, alpha subunit |
fatty oxidation complex, alpha subunit |
| fadA |
Gene: SO_0020: fatty oxidation complex, beta subunit |
Gene: Sputcn32_0012: fatty oxidation complex, beta subunit |
Gene: Sputw3181_0012: fatty oxidation complex, beta subunit |
Gene: Shewana3_0023: fatty oxidation complex, beta subunit |
Gene: Shewmr4_0017: fatty oxidation complex, beta subunit |
Gene: Shewmr7_0015: fatty oxidation complex, beta subunit |
Gene: Sbal_0020: fatty oxidation complex, beta subunit |
Gene: Sden_0014: fatty oxidation complex, beta subunit |
Gene: Sfri_0012: fatty oxidation complex, beta subunit |
Gene: Sama_0031: fatty oxidation complex, beta subunit |
Gene: Shew_0018: fatty oxidation complex, beta subunit |
Gene: Spea_0017: fatty oxidation complex, beta subunit |
Gene: Shal_0015: fatty oxidation complex, beta subunit |
Gene: swp_0034: fatty oxidation complex, beta subunit |
Gene: Ssed_0022: fatty oxidation complex, beta subunit |
Gene: Swoo_0020: fatty oxidation complex, beta subunit |
fatty oxidation complex, beta subunit |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |