Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Shewanella sediminis HAW-EB3

Properties
Regulator type: Transcription factor
TF locus tag: Ssed_2066
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes 27
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 295 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -180
Score: 5.5
Sequence: ATTAAAACGATCGTTTGCTT
Locus tag: Ssed_1667
Name: fadD3
Funciton: long-chain-fatty-acid--CoA ligase
Ssed_1667
fadD3
long-chain-fatty-acid--CoA ligase
Position: -32
Score: 5.8
Sequence: AGTTAAACAACCGTTTGAAT
Locus tag: Ssed_4456
Name: SO0080
Funciton: thioesterase superfamily protein
Ssed_4456
SO0080
thioesterase superfamily protein
Position: -120
Score: 5.6
Sequence: ATACAAACGGTCGTTTGAAT
Locus tag: Ssed_1445
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Ssed_1446
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
Ssed_1445
etfB
electron transfer flavoprotein, beta subunit
Ssed_1446
etfA
electron transfer flavoprotein, alpha subunit
Position: -78
Score: 6
Sequence: AATTAAACGCTTGTTTGAAT
Locus tag: Ssed_0770
Name: echH
Funciton: enoyl-CoA hydratase/isomerase family protein
Ssed_0770
echH
enoyl-CoA hydratase/isomerase family protein
Position: -86
Score: 5.1
Sequence: AATTAATCATTTGTTTTAAA
Locus tag: Ssed_1692
Name: SO2935
Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
Ssed_1692
SO2935
oxidoreductase, short-chain dehydrogenase/reductase family
Position: -349
Score: 5.8
Sequence: ATTTAAATAAGTGTTTAAAT
Locus tag: Ssed_2818
Name: sdhC
Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Ssed_2817
Name: sdhD
Funciton: succinate dehydrogenase subunit D
Locus tag: Ssed_2816
Name: sdhA
Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Ssed_2815
Name: sdhB
Funciton: succinate dehydrogenase, iron-sulfur protein
Ssed_2818
sdhC
succinate dehydrogenase, cytochrome b556 subunit
Ssed_2817
sdhD
succinate dehydrogenase subunit D
Ssed_2816
sdhA
succinate dehydrogenase, flavoprotein subunit
Ssed_2815
sdhB
succinate dehydrogenase, iron-sulfur protein
Position: -156
Score: 5.6
Sequence: TTTTAAACGTTTGTTTGAAA
Locus tag: Ssed_1999
Name: fadE2
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Ssed_1999
fadE2
oxidoreductase, acyl-CoA dehydrogenase family
Position: -40
Score: 6.1
Sequence: ATTAAAACAACTGTTTTAAT
Locus tag: Ssed_2292
Name: acdH
Funciton: acyl-CoA dehydrogenase family protein
Ssed_2292
acdH
acyl-CoA dehydrogenase family protein
Position: -183
Score: 5.4
Sequence: AACCAAACAACTGTTTAAAA
Locus tag: Ssed_1628
Name: fadI
Funciton: fatty oxidation complex, beta subunit
Locus tag: Ssed_1629
Name: fadJ
Funciton: fatty oxidation complex, alpha subunit
Ssed_1628
fadI
fatty oxidation complex, beta subunit
Ssed_1629
fadJ
fatty oxidation complex, alpha subunit
Position: -31
Score: 5
Sequence: TTTAAATCACTTGTTTAAAA
Position: -18
Score: 5.4
Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: Ssed_2310
Name: fadH
Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
Ssed_2310
fadH
NADP-dependent 2,4-dienoyl-CoA reductase
Position: -228
Score: 6.1
Sequence: AATCAAACACCCGTTTAAAT
Locus tag: Ssed_0023
Name: fadB
Funciton: fatty oxidation complex, alpha subunit
Locus tag: Ssed_0022
Name: fadA
Funciton: fatty oxidation complex, beta subunit
Ssed_0023
fadB
fatty oxidation complex, alpha subunit
Ssed_0022
fadA
fatty oxidation complex, beta subunit
Position: -83
Score: 5.6
Sequence: ATCTAAACGCCTGTTTGATT
Locus tag: Ssed_3695
Name: fadD2
Funciton: long-chain-fatty-acid--CoA ligase
Ssed_3695
fadD2
long-chain-fatty-acid--CoA ligase
Position: -506
Score: 5.3
Sequence: ATTGAAACGGTCGTATGAAT
Locus tag: Ssed_1414
Name: aceB
Funciton: malate synthase A
Locus tag: Ssed_1415
Name: aceA
Funciton: isocitrate lyase
Ssed_1414
aceB
malate synthase A
Ssed_1415
aceA
isocitrate lyase
Position: -49
Score: 5.2
Sequence: ATTAAAACACCCGTTTAACG
Locus tag: Ssed_4403
Name: etfD
Funciton: electron-transferring-flavoprotein dehydrogenase
Ssed_4403
etfD
electron-transferring-flavoprotein dehydrogenase
Position: -260
Score: 5.9
Sequence: ATTAAAACGTGTGTTTAATT
Locus tag: Ssed_3864
Name: SO0881
Funciton: conserved hypothetical protein
Locus tag: Ssed_3863
Name: SO0882
Funciton: oxidoreductase, GMC family
Ssed_3864
SO0881
conserved hypothetical protein
Ssed_3863
SO0882
oxidoreductase, GMC family
Position: -132
Score: 5.7
Sequence: ATTAAAACGCCTGTATGAAT
Locus tag: Ssed_2523
Name: fadD1
Funciton: long-chain-fatty-acid--CoA ligase
Ssed_2523
fadD1
long-chain-fatty-acid--CoA ligase
Position: -100
Score: 5.8
Sequence: ATTTAAACACTTATTTAAAT
Locus tag: Ssed_2819
Name: gltA
Funciton: citrate synthase
Ssed_2819
gltA
citrate synthase
Position: -40
Score: 6
Sequence: ATTTAAACGGGTGTTTAAAA
Locus tag: Ssed_2066
Name: psrA
Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Ssed_2067
Name: fadE1
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Ssed_2066
psrA
fatty acid degradation transcriptional regulator, TetR family
Ssed_2067
fadE1
oxidoreductase, acyl-CoA dehydrogenase family
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