Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_1945
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes 24
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 295 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -40
Score: 5.7
Sequence: TTTGAAACAACTGTTTAAAT
Locus tag: Shal_2054
Name: acdH
Funciton: acyl-CoA dehydrogenase family protein
Shal_2054
acdH
acyl-CoA dehydrogenase family protein
Position: -73
Score: 4.9
Sequence: TTTAAAACAGCTGTTTATCA
Locus tag: Shal_2614
Name: SO2935
Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
Shal_2614
SO2935
oxidoreductase, short-chain dehydrogenase/reductase family
Position: -79
Score: 5.2
Sequence: GGTTAAACAGTTGTTTGAAT
Locus tag: Shal_3661
Name: echH
Funciton: enoyl-CoA hydratase/isomerase family protein
Shal_3661
echH
enoyl-CoA hydratase/isomerase family protein
Position: -47
Score: 5.6
Sequence: AATTAAACAGCTGTTTAAAC
Locus tag: Shal_0066
Name: SO0080
Funciton: thioesterase superfamily protein
Shal_0066
SO0080
thioesterase superfamily protein
Position: -146
Score: 5.9
Sequence: ATTAAAACGTATGTTTAATT
Locus tag: Shal_3598
Name: SO0881
Funciton: conserved hypothetical protein
Locus tag: Shal_3597
Name: SO0882
Funciton: oxidoreductase, GMC family
Shal_3598
SO0881
conserved hypothetical protein
Shal_3597
SO0882
oxidoreductase, GMC family
Position: -98
Score: 5.7
Sequence: ATCCAAACAAGCGTTTAAAT
Locus tag: Shal_1266
Name: fadE3
Funciton: acyl-CoA dehydrogenase
Shal_1266
fadE3
acyl-CoA dehydrogenase
Position: -350
Score: 5.7
Sequence: ATTTAAATAAGCGTTTAAAT
Locus tag: Shal_2493
Name: sdhC
Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Shal_2492
Name: sdhD
Funciton: succinate dehydrogenase subunit D
Locus tag: Shal_2491
Name: sdhA
Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Shal_2490
Name: sdhB
Funciton: succinate dehydrogenase, iron-sulfur protein
Shal_2493
sdhC
succinate dehydrogenase, cytochrome b556 subunit
Shal_2492
sdhD
succinate dehydrogenase subunit D
Shal_2491
sdhA
succinate dehydrogenase, flavoprotein subunit
Shal_2490
sdhB
succinate dehydrogenase, iron-sulfur protein
Position: -79
Score: 5.1
Sequence: ATTAAAACACCCGTTTATAG
Locus tag: Shal_0121
Name: etfD
Funciton: electron-transferring-flavoprotein dehydrogenase
Shal_0121
etfD
electron-transferring-flavoprotein dehydrogenase
Position: -151
Score: 5.4
Sequence: AAACAAACAAGTGTTTAAAA
Locus tag: Shal_2671
Name: fadI
Funciton: fatty oxidation complex, beta subunit
Locus tag: Shal_2670
Name: fadJ
Funciton: fatty oxidation complex, alpha subunit
Shal_2671
fadI
fatty oxidation complex, beta subunit
Shal_2670
fadJ
fatty oxidation complex, alpha subunit
Position: -154
Score: 6
Sequence: ATTTAAACATTTGTTTAATT
Locus tag: Shal_1890
Name: fadE2
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Shal_1890
fadE2
oxidoreductase, acyl-CoA dehydrogenase family
Position: -31
Score: 5
Sequence: ATTGAATCACTTGTTTAAAA
Position: -18
Score: 5.4
Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: Shal_2030
Name: fadH
Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
Shal_2030
fadH
NADP-dependent 2,4-dienoyl-CoA reductase
Position: -62
Score: 4.8
Sequence: gTcTAAACAGCTGTTTgAcT
Locus tag: Shal_3395
Name: fadD2
Funciton: long-chain-fatty-acid--CoA ligase
Shal_3395
fadD2
long-chain-fatty-acid--CoA ligase
Position: -168
Score: 5.5
Sequence: AACCAAACGACCGTTTAAAT
Locus tag: Shal_0016
Name: fadB
Funciton: fatty oxidation complex, alpha subunit
Locus tag: Shal_0015
Name: fadA
Funciton: fatty oxidation complex, beta subunit
Shal_0016
fadB
fatty oxidation complex, alpha subunit
Shal_0015
fadA
fatty oxidation complex, beta subunit
Position: -136
Score: 5.5
Sequence: ATTTAAACGCTCGTATGATT
Locus tag: Shal_1832
Name: fadD1
Funciton: long-chain-fatty-acid--CoA ligase
Shal_1832
fadD1
long-chain-fatty-acid--CoA ligase
Position: -592
Score: 5.6
Sequence: GTTTAAACGGTTGTTTGAAT
Locus tag: Shal_1352
Name: aceB
Funciton: malate synthase A
Shal_1352
aceB
malate synthase A
Position: -25
Score: 5.9
Sequence: ATTTAAACGAGTGTTTAAAA
Locus tag: Shal_1945
Name: psrA
Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Shal_1946
Name: fadE1
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Shal_1945
psrA
fatty acid degradation transcriptional regulator, TetR family
Shal_1946
fadE1
oxidoreductase, acyl-CoA dehydrogenase family
Position: -101
Score: 5.7
Sequence: ATTTAAACGCTTATTTAAAT
Locus tag: Shal_2494
Name: gltA
Funciton: citrate synthase
Shal_2494
gltA
citrate synthase
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