Regulon of PsrA in Shewanella denitrificans OS217
| Regulator type: | Transcription factor |
| TF locus tag: | Sden_2116 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 23 |
| - Operons | 15 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -24
Score: 6 Sequence: ATTTAAACAGGTGTTTTAAA
Locus tag: Sden_2116
Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Sden_2115
Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
|||
|
psrA
|
fatty acid degradation transcriptional regulator, TetR family
|
||
|
fadE1
|
oxidoreductase, acyl-CoA dehydrogenase family
|
||
|
Position: -150
Score: 5.7 Sequence: TTTTAAACAATTGTTTGAAA
Locus tag: Sden_1764
Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
|||
|
fadE2
|
oxidoreductase, acyl-CoA dehydrogenase family
|
||
|
Position: -46
Score: 5.5 Sequence: ATTCAAGCGAGCGTTTGAAT
Locus tag: Sden_0953
Name: Sbal_0657 Funciton: hypothetical protein |
|||
|
Sbal_0657
|
hypothetical protein
|
||
|
Position: -20
Score: 5.3 Sequence: TACCAAACGAGCGTTTAAAT
Locus tag: Sden_0074
Name: SO0080 Funciton: thioesterase superfamily protein |
|||
|
SO0080
|
thioesterase superfamily protein
|
||
|
Position: -39
Score: 6.1 Sequence: ATTAAAACACATGTTTGAAT
Locus tag: Sden_1761
Name: acdH Funciton: acyl-CoA dehydrogenase family protein |
|||
|
acdH
|
acyl-CoA dehydrogenase family protein
|
||
|
Position: -81
Score: 6.1 Sequence: AATTAAACAGATGTTTGAAT
Locus tag: Sden_3229
Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein |
|||
|
echH
|
enoyl-CoA hydratase/isomerase family protein
|
||
|
Position: -374
Score: 5.6 Sequence: ATTTAAATAAGCGTTTAATT
Locus tag: Sden_2187
Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Sden_2186
Name: sdhD Funciton: succinate dehydrogenase subunit D
Locus tag: Sden_2185
Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Sden_2184
Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein |
|||
|
sdhC
|
succinate dehydrogenase, cytochrome b556 subunit
|
||
|
sdhD
|
succinate dehydrogenase subunit D
|
||
|
sdhA
|
succinate dehydrogenase, flavoprotein subunit
|
||
|
sdhB
|
succinate dehydrogenase, iron-sulfur protein
|
||
|
Position: -50
Score: 5.6 Sequence: AATTAAACGCTTATTTAAAT
Locus tag: Sden_2189
Name: gltA Funciton: citrate synthase |
|||
|
gltA
|
citrate synthase
|
||
|
Position: -120
Score: 5.1 Sequence: ATGCAAACGCTTGTTTAACA
Locus tag: Sden_2539
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sden_2538
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
|||
|
etfB
|
electron transfer flavoprotein, beta subunit
|
||
|
etfA
|
electron transfer flavoprotein, alpha subunit
|
||
|
Position: -31
Score: 5 Sequence: TTTAAATCACTTGTTTAAAA
Position: -18
Score: 5.4 Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: Sden_1900
Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase |
|||
|
fadH
|
NADP-dependent 2,4-dienoyl-CoA reductase
|
||
|
Position: -470
Score: 5.3 Sequence: ATTAAAACGGTCGTTTGATG
Locus tag: Sden_1245
Name: aceB Funciton: malate synthase A
Locus tag: Sden_1246
Name: aceA Funciton: isocitrate lyase |
|||
|
aceB
|
malate synthase A
|
||
|
aceA
|
isocitrate lyase
|
||
|
Position: -73
Score: 5.3 Sequence: TTTAAAACAATCGTTTACTT
Locus tag: Sden_2473
Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family |
|||
|
SO2935
|
oxidoreductase, short-chain dehydrogenase/reductase family
|
||
|
Position: -149
Score: 6.1 Sequence: AATTAAACGGCCGTTTAAAT
Locus tag: Sden_0015
Name: fadB Funciton: fatty oxidation complex, alpha subunit
Locus tag: Sden_0014
Name: fadA Funciton: fatty oxidation complex, beta subunit |
|||
|
fadB
|
fatty oxidation complex, alpha subunit
|
||
|
fadA
|
fatty oxidation complex, beta subunit
|
||
|
Position: -141
Score: 5.4 Sequence: AAATAAACGGGTGTTTAAAA
Locus tag: Sden_1529
Name: fadI Funciton: fatty oxidation complex, beta subunit
Locus tag: Sden_1530
Name: fadJ Funciton: fatty oxidation complex, alpha subunit |
|||
|
fadI
|
fatty oxidation complex, beta subunit
|
||
|
fadJ
|
fatty oxidation complex, alpha subunit
|
||
|
Position: -169
Score: 5.6 Sequence: ATTTAAACGGCCGTATGATT
Locus tag: Sden_1625
Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase |
|||
|
fadD1
|
long-chain-fatty-acid--CoA ligase
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |