Regulon of PsrA in Shewanella sp W3-18-1
| Regulator type: | Transcription factor |
| TF locus tag: | Sputw3181_2147 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 26 |
| - Operons | 17 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -86
Score: 4.5 Sequence: TTTCATTCATTTGTTTGAAA
Position: -73
Score: 4.5 Sequence: TTTGAAACATGCGTTTATCA
Locus tag: Sputw3181_1612
Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family |
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SO2935
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oxidoreductase, short-chain dehydrogenase/reductase family
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Position: -42
Score: 5 Sequence: ATTCGAACGCACGTTTAACT
Locus tag: Sputw3181_0762
Name: Sbal_0657 Funciton: hypothetical protein |
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Sbal_0657
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hypothetical protein
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Position: -121
Score: 5.2 Sequence: ATGCAAACAGTCGTTTGAGT
Locus tag: Sputw3181_1497
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sputw3181_1498
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
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electron transfer flavoprotein, alpha subunit
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Position: -331
Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT
Locus tag: Sputw3181_1735
Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Sputw3181_1736
Name: sdhD Funciton: succinate dehydrogenase subunit D
Locus tag: Sputw3181_1737
Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Sputw3181_1738
Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein |
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sdhC
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succinate dehydrogenase, cytochrome b556 subunit
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sdhD
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succinate dehydrogenase subunit D
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sdhA
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succinate dehydrogenase, flavoprotein subunit
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sdhB
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succinate dehydrogenase, iron-sulfur protein
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Position: -41
Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT
Locus tag: Sputw3181_1978
Name: acdH Funciton: acyl-CoA dehydrogenase family protein |
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acdH
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acyl-CoA dehydrogenase family protein
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Position: -80
Score: 6.1 Sequence: AATTAAACATCTGTTTGAAT
Locus tag: Sputw3181_3411
Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein |
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echH
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enoyl-CoA hydratase/isomerase family protein
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Position: -77
Score: 5.9 Sequence: ATTAAAACGTATGTTTAATT
Locus tag: Sputw3181_0822
Name: SO0881 Funciton: conserved hypothetical protein
Locus tag: Sputw3181_0823
Name: SO0882 Funciton: oxidoreductase, GMC family |
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SO0881
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conserved hypothetical protein
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SO0882
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oxidoreductase, GMC family
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Position: -65
Score: 5.5 Sequence: ATCTAAACATATGTTTGATT
Locus tag: Sputw3181_3197
Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD2
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long-chain-fatty-acid--CoA ligase
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Position: -162
Score: 6.1 Sequence: AATTAAACAGTCGTTTAAAT
Locus tag: Sputw3181_0013
Name: fadB Funciton: fatty oxidation complex, alpha subunit
Locus tag: Sputw3181_0012
Name: fadA Funciton: fatty oxidation complex, beta subunit |
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fadB
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fatty oxidation complex, alpha subunit
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fadA
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fatty oxidation complex, beta subunit
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Position: -438
Score: 5.9 Sequence: AATTAAACGGTCGTTTTAAT
Locus tag: Sputw3181_2866
Name: aceB Funciton: malate synthase A
Locus tag: Sputw3181_2865
Name: aceA Funciton: isocitrate lyase |
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aceB
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malate synthase A
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aceA
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isocitrate lyase
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Position: -156
Score: 5.9 Sequence: ATTTAAACAATTGTTTGAAA
Locus tag: Sputw3181_2234
Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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fadE2
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -70
Score: 5.4 Sequence: AATAAAACGCCCGTTTACAA
Locus tag: Sputw3181_0242
Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase |
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etfD
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electron-transferring-flavoprotein dehydrogenase
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Position: -168
Score: 5.4 Sequence: AAACAAACAGGTGTTTAAAA
Locus tag: Sputw3181_1548
Name: fadI Funciton: fatty oxidation complex, beta subunit
Locus tag: Sputw3181_1549
Name: fadJ Funciton: fatty oxidation complex, alpha subunit |
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fadI
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fatty oxidation complex, beta subunit
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fadJ
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fatty oxidation complex, alpha subunit
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Position: -135
Score: 5.4 Sequence: ATTAAAACGCTCGTATGATT
Locus tag: Sputw3181_2264
Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD1
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long-chain-fatty-acid--CoA ligase
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Position: -38
Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA
Locus tag: Sputw3181_2147
Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Sputw3181_2146
Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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psrA
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fatty acid degradation transcriptional regulator, TetR family
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fadE1
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -31
Score: 5 Sequence: TTTAAATCACTTGTTTTAAA
Position: -18
Score: 5.4 Sequence: TTTTAAAAGGATGTTTGAAT
Locus tag: Sputw3181_1935
Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase |
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fadH
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NADP-dependent 2,4-dienoyl-CoA reductase
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Position: -105
Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT
Locus tag: Sputw3181_1734
Name: gltA Funciton: citrate synthase |
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gltA
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citrate synthase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |