Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Shewanella sp W3-18-1

Properties
Regulator type: Transcription factor
TF locus tag: Sputw3181_2147
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes 26
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 295 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -86
Score: 4.5
Sequence: TTTCATTCATTTGTTTGAAA
Position: -73
Score: 4.5
Sequence: TTTGAAACATGCGTTTATCA
Locus tag: Sputw3181_1612
Name: SO2935
Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
SO2935
oxidoreductase, short-chain dehydrogenase/reductase family

Position: -42
Score: 5
Sequence: ATTCGAACGCACGTTTAACT
Locus tag: Sputw3181_0762
Name: Sbal_0657
Funciton: hypothetical protein
Sbal_0657
hypothetical protein

Position: -121
Score: 5.2
Sequence: ATGCAAACAGTCGTTTGAGT
Locus tag: Sputw3181_1497
Name: etfB
Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Sputw3181_1498
Name: etfA
Funciton: electron transfer flavoprotein, alpha subunit
etfB
electron transfer flavoprotein, beta subunit
etfA
electron transfer flavoprotein, alpha subunit

Position: -331
Score: 5.7
Sequence: ATTTAAATAAGCGTTTAAAT
Locus tag: Sputw3181_1735
Name: sdhC
Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Sputw3181_1736
Name: sdhD
Funciton: succinate dehydrogenase subunit D
Locus tag: Sputw3181_1737
Name: sdhA
Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Sputw3181_1738
Name: sdhB
Funciton: succinate dehydrogenase, iron-sulfur protein
sdhC
succinate dehydrogenase, cytochrome b556 subunit
sdhD
succinate dehydrogenase subunit D
sdhA
succinate dehydrogenase, flavoprotein subunit
sdhB
succinate dehydrogenase, iron-sulfur protein

Position: -41
Score: 6.1
Sequence: ATTAAAACAACTGTTTTAAT
Locus tag: Sputw3181_1978
Name: acdH
Funciton: acyl-CoA dehydrogenase family protein
acdH
acyl-CoA dehydrogenase family protein

Position: -80
Score: 6.1
Sequence: AATTAAACATCTGTTTGAAT
Locus tag: Sputw3181_3411
Name: echH
Funciton: enoyl-CoA hydratase/isomerase family protein
echH
enoyl-CoA hydratase/isomerase family protein

Position: -77
Score: 5.9
Sequence: ATTAAAACGTATGTTTAATT
Locus tag: Sputw3181_0822
Name: SO0881
Funciton: conserved hypothetical protein
Locus tag: Sputw3181_0823
Name: SO0882
Funciton: oxidoreductase, GMC family
SO0881
conserved hypothetical protein
SO0882
oxidoreductase, GMC family

Position: -65
Score: 5.5
Sequence: ATCTAAACATATGTTTGATT
Locus tag: Sputw3181_3197
Name: fadD2
Funciton: long-chain-fatty-acid--CoA ligase
fadD2
long-chain-fatty-acid--CoA ligase

Position: -162
Score: 6.1
Sequence: AATTAAACAGTCGTTTAAAT
Locus tag: Sputw3181_0013
Name: fadB
Funciton: fatty oxidation complex, alpha subunit
Locus tag: Sputw3181_0012
Name: fadA
Funciton: fatty oxidation complex, beta subunit
fadB
fatty oxidation complex, alpha subunit
fadA
fatty oxidation complex, beta subunit

Position: -438
Score: 5.9
Sequence: AATTAAACGGTCGTTTTAAT
Locus tag: Sputw3181_2866
Name: aceB
Funciton: malate synthase A
Locus tag: Sputw3181_2865
Name: aceA
Funciton: isocitrate lyase
aceB
malate synthase A
aceA
isocitrate lyase

Position: -156
Score: 5.9
Sequence: ATTTAAACAATTGTTTGAAA
Locus tag: Sputw3181_2234
Name: fadE2
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
fadE2
oxidoreductase, acyl-CoA dehydrogenase family

Position: -70
Score: 5.4
Sequence: AATAAAACGCCCGTTTACAA
Locus tag: Sputw3181_0242
Name: etfD
Funciton: electron-transferring-flavoprotein dehydrogenase
etfD
electron-transferring-flavoprotein dehydrogenase

Position: -168
Score: 5.4
Sequence: AAACAAACAGGTGTTTAAAA
Locus tag: Sputw3181_1548
Name: fadI
Funciton: fatty oxidation complex, beta subunit
Locus tag: Sputw3181_1549
Name: fadJ
Funciton: fatty oxidation complex, alpha subunit
fadI
fatty oxidation complex, beta subunit
fadJ
fatty oxidation complex, alpha subunit

Position: -135
Score: 5.4
Sequence: ATTAAAACGCTCGTATGATT
Locus tag: Sputw3181_2264
Name: fadD1
Funciton: long-chain-fatty-acid--CoA ligase
fadD1
long-chain-fatty-acid--CoA ligase

Position: -38
Score: 5.9
Sequence: ATTTAAACGAGTGTTTTAAA
Locus tag: Sputw3181_2147
Name: psrA
Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Sputw3181_2146
Name: fadE1
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
psrA
fatty acid degradation transcriptional regulator, TetR family
fadE1
oxidoreductase, acyl-CoA dehydrogenase family

Position: -31
Score: 5
Sequence: TTTAAATCACTTGTTTTAAA
Position: -18
Score: 5.4
Sequence: TTTTAAAAGGATGTTTGAAT
Locus tag: Sputw3181_1935
Name: fadH
Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
fadH
NADP-dependent 2,4-dienoyl-CoA reductase

Position: -105
Score: 5.7
Sequence: ATTTAAACGCTTATTTAAAT
Locus tag: Sputw3181_1734
Name: gltA
Funciton: citrate synthase
gltA
citrate synthase
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