Regulon of PsrA in Shewanella sp W3-18-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputw3181_2147
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes	26
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 295 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -86 Score: 4.5 Sequence: TTTCATTCATTTGTTTGAAA Position: -73 Score: 4.5 Sequence: TTTGAAACATGCGTTTATCA Locus tag: Sputw3181_1612 Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
	Sputw3181_1612	SO2935	oxidoreductase, short-chain dehydrogenase/reductase family
Position: -42 Score: 5 Sequence: ATTCGAACGCACGTTTAACT Locus tag: Sputw3181_0762 Name: Sbal_0657 Funciton: hypothetical protein
	Sputw3181_0762	Sbal_0657	hypothetical protein
Position: -121 Score: 5.2 Sequence: ATGCAAACAGTCGTTTGAGT Locus tag: Sputw3181_1497 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sputw3181_1498 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sputw3181_1497	etfB	electron transfer flavoprotein, beta subunit
	Sputw3181_1498	etfA	electron transfer flavoprotein, alpha subunit
Position: -331 Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT Locus tag: Sputw3181_1735 Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit Locus tag: Sputw3181_1736 Name: sdhD Funciton: succinate dehydrogenase subunit D Locus tag: Sputw3181_1737 Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit Locus tag: Sputw3181_1738 Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein
	Sputw3181_1735	sdhC	succinate dehydrogenase, cytochrome b556 subunit
	Sputw3181_1736	sdhD	succinate dehydrogenase subunit D
	Sputw3181_1737	sdhA	succinate dehydrogenase, flavoprotein subunit
	Sputw3181_1738	sdhB	succinate dehydrogenase, iron-sulfur protein
Position: -41 Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT Locus tag: Sputw3181_1978 Name: acdH Funciton: acyl-CoA dehydrogenase family protein
	Sputw3181_1978	acdH	acyl-CoA dehydrogenase family protein
Position: -80 Score: 6.1 Sequence: AATTAAACATCTGTTTGAAT Locus tag: Sputw3181_3411 Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein
	Sputw3181_3411	echH	enoyl-CoA hydratase/isomerase family protein
Position: -77 Score: 5.9 Sequence: ATTAAAACGTATGTTTAATT Locus tag: Sputw3181_0822 Name: SO0881 Funciton: conserved hypothetical protein Locus tag: Sputw3181_0823 Name: SO0882 Funciton: oxidoreductase, GMC family
	Sputw3181_0822	SO0881	conserved hypothetical protein
	Sputw3181_0823	SO0882	oxidoreductase, GMC family
Position: -65 Score: 5.5 Sequence: ATCTAAACATATGTTTGATT Locus tag: Sputw3181_3197 Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase
	Sputw3181_3197	fadD2	long-chain-fatty-acid--CoA ligase
Position: -162 Score: 6.1 Sequence: AATTAAACAGTCGTTTAAAT Locus tag: Sputw3181_0013 Name: fadB Funciton: fatty oxidation complex, alpha subunit Locus tag: Sputw3181_0012 Name: fadA Funciton: fatty oxidation complex, beta subunit
	Sputw3181_0013	fadB	fatty oxidation complex, alpha subunit
	Sputw3181_0012	fadA	fatty oxidation complex, beta subunit
Position: -438 Score: 5.9 Sequence: AATTAAACGGTCGTTTTAAT Locus tag: Sputw3181_2866 Name: aceB Funciton: malate synthase A Locus tag: Sputw3181_2865 Name: aceA Funciton: isocitrate lyase
	Sputw3181_2866	aceB	malate synthase A
	Sputw3181_2865	aceA	isocitrate lyase
Position: -156 Score: 5.9 Sequence: ATTTAAACAATTGTTTGAAA Locus tag: Sputw3181_2234 Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sputw3181_2234	fadE2	oxidoreductase, acyl-CoA dehydrogenase family
Position: -70 Score: 5.4 Sequence: AATAAAACGCCCGTTTACAA Locus tag: Sputw3181_0242 Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase
	Sputw3181_0242	etfD	electron-transferring-flavoprotein dehydrogenase
Position: -168 Score: 5.4 Sequence: AAACAAACAGGTGTTTAAAA Locus tag: Sputw3181_1548 Name: fadI Funciton: fatty oxidation complex, beta subunit Locus tag: Sputw3181_1549 Name: fadJ Funciton: fatty oxidation complex, alpha subunit
	Sputw3181_1548	fadI	fatty oxidation complex, beta subunit
	Sputw3181_1549	fadJ	fatty oxidation complex, alpha subunit
Position: -135 Score: 5.4 Sequence: ATTAAAACGCTCGTATGATT Locus tag: Sputw3181_2264 Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase
	Sputw3181_2264	fadD1	long-chain-fatty-acid--CoA ligase
Position: -38 Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA Locus tag: Sputw3181_2147 Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family Locus tag: Sputw3181_2146 Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sputw3181_2147	psrA	fatty acid degradation transcriptional regulator, TetR family
	Sputw3181_2146	fadE1	oxidoreductase, acyl-CoA dehydrogenase family
Position: -31 Score: 5 Sequence: TTTAAATCACTTGTTTTAAA Position: -18 Score: 5.4 Sequence: TTTTAAAAGGATGTTTGAAT Locus tag: Sputw3181_1935 Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
	Sputw3181_1935	fadH	NADP-dependent 2,4-dienoyl-CoA reductase
Position: -105 Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT Locus tag: Sputw3181_1734 Name: gltA Funciton: citrate synthase
	Sputw3181_1734	gltA	citrate synthase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PsrA in Shewanella sp W3-18-1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --