Regulon of PsrA in Shewanella pealeana ATCC 700345

Properties
Regulator type:	Transcription factor
TF locus tag:	Spea_2339
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes	24
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 295 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -154 Score: 5.7 Sequence: AATTAAACATTTGTTTGAAA Position: -121 Score: 4.8 Sequence: AAATTAACGAACGTTTAAAT Locus tag: Spea_2393 Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Spea_2393	fadE2	oxidoreductase, acyl-CoA dehydrogenase family
Position: -86 Score: 4.5 Sequence: GATTAATCGTTTGTTTAAAA Position: -73 Score: 4.9 Sequence: TTTAAAACAGCTGTTTATCA Locus tag: Spea_1649 Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
	Spea_1649	SO2935	oxidoreductase, short-chain dehydrogenase/reductase family
Position: -80 Score: 5.1 Sequence: ATTAAAACACCCGTTTATAG Locus tag: Spea_4121 Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase
	Spea_4121	etfD	electron-transferring-flavoprotein dehydrogenase
Position: -79 Score: 5.8 Sequence: AGTTAAACAGTTGTTTGAAT Locus tag: Spea_3567 Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein
	Spea_3567	echH	enoyl-CoA hydratase/isomerase family protein
Position: -99 Score: 5.6 Sequence: ATCCAAACGCACGTTTAAAT Locus tag: Spea_1234 Name: fadE3 Funciton: acyl-CoA dehydrogenase
	Spea_1234	fadE3	acyl-CoA dehydrogenase
Position: -351 Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT Locus tag: Spea_1784 Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit Locus tag: Spea_1785 Name: sdhD Funciton: succinate dehydrogenase subunit D Locus tag: Spea_1786 Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit Locus tag: Spea_1787 Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein
	Spea_1784	sdhC	succinate dehydrogenase, cytochrome b556 subunit
	Spea_1785	sdhD	succinate dehydrogenase subunit D
	Spea_1786	sdhA	succinate dehydrogenase, flavoprotein subunit
	Spea_1787	sdhB	succinate dehydrogenase, iron-sulfur protein
Position: -145 Score: 5.9 Sequence: ATTAAAACGTGTGTTTAATT Position: -98 Score: 4.7 Sequence: TTTTAAACTGGTCTTTTATT Locus tag: Spea_3504 Name: SO0881 Funciton: conserved hypothetical protein Locus tag: Spea_3503 Name: SO0882 Funciton: oxidoreductase, GMC family
	Spea_3504	SO0881	conserved hypothetical protein
	Spea_3503	SO0882	oxidoreductase, GMC family
Position: -137 Score: 5.5 Sequence: ATTTAAACGACCGTATGATT Locus tag: Spea_2448 Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase
	Spea_2448	fadD1	long-chain-fatty-acid--CoA ligase
Position: -148 Score: 5.4 Sequence: AAACAAACAAGTGTTTAAAA Locus tag: Spea_2599 Name: fadI Funciton: fatty oxidation complex, beta subunit Locus tag: Spea_2598 Name: fadJ Funciton: fatty oxidation complex, alpha subunit
	Spea_2599	fadI	fatty oxidation complex, beta subunit
	Spea_2598	fadJ	fatty oxidation complex, alpha subunit
Position: -40 Score: 5.7 Sequence: TTTGAAACAACTGTTTAAAT Locus tag: Spea_2081 Name: acdH Funciton: acyl-CoA dehydrogenase family protein
	Spea_2081	acdH	acyl-CoA dehydrogenase family protein
Position: -70 Score: 5.6 Sequence: ATCTAAACGCTTGTTTGATT Locus tag: Spea_3322 Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase
	Spea_3322	fadD2	long-chain-fatty-acid--CoA ligase
Position: -101 Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT Locus tag: Spea_1783 Name: gltA Funciton: citrate synthase
	Spea_1783	gltA	citrate synthase
Position: -168 Score: 5.6 Sequence: AACTAAACGGTCGTTTAAAT Locus tag: Spea_0018 Name: fadB Funciton: fatty oxidation complex, alpha subunit Locus tag: Spea_0017 Name: fadA Funciton: fatty oxidation complex, beta subunit
	Spea_0018	fadB	fatty oxidation complex, alpha subunit
	Spea_0017	fadA	fatty oxidation complex, beta subunit
Position: -31 Score: 5.3 Sequence: ATTAAATCACTTGTTTAAAA Position: -18 Score: 5.4 Sequence: TTTAAAAAGGATGTTTGAAT Locus tag: Spea_2252 Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
	Spea_2252	fadH	NADP-dependent 2,4-dienoyl-CoA reductase
Position: -39 Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA Locus tag: Spea_2339 Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family Locus tag: Spea_2338 Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Spea_2339	psrA	fatty acid degradation transcriptional regulator, TetR family
	Spea_2338	fadE1	oxidoreductase, acyl-CoA dehydrogenase family
Position: -70 Score: 5.9 Sequence: AGTTAAACAGCCGTTTAAAT Locus tag: Spea_4183 Name: SO0080 Funciton: thioesterase superfamily protein
	Spea_4183	SO0080	thioesterase superfamily protein
Position: -550 Score: 5.7 Sequence: ATTGAAACGTTCGTTTGAAT Locus tag: Spea_1290 Name: aceB Funciton: malate synthase A
	Spea_1290	aceB	malate synthase A

Export
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PsrA in Shewanella pealeana ATCC 700345

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --