Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PsrA in Shewanella loihica PV-4

Properties
Regulator type: Transcription factor
TF locus tag: Shew_2052
Regulator family: TetR
Regulation mode: repressor
Biological process: Fatty acid degradation
Effector: Oleate
Regulog: PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes 25
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 295 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -130
Score: 5.5
Sequence: ATTAAAACGCCCGTATGATT
Locus tag: Shew_2188
Name: fadD1
Funciton: long-chain-fatty-acid--CoA ligase
Shew_2188
fadD1
long-chain-fatty-acid--CoA ligase
Position: -87
Score: 4.4
Sequence: AATCAGTCATTTGTTTTAAA
Position: -74
Score: 4.4
Sequence: TTTTAAACATTCGTTTCAGG
Locus tag: Shew_2409
Name: SO2935
Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
Shew_2409
SO2935
oxidoreductase, short-chain dehydrogenase/reductase family
Position: -103
Score: 5.8
Sequence: ATTTAAACACTTATTTAAAT
Locus tag: Shew_1650
Name: gltA
Funciton: citrate synthase
Shew_1650
gltA
citrate synthase
Position: -47
Score: 5.7
Sequence: AATAAAACACCCGTTTCAAT
Locus tag: Shew_0086
Name: etfD
Funciton: electron-transferring-flavoprotein dehydrogenase
Shew_0086
etfD
electron-transferring-flavoprotein dehydrogenase
Position: -80
Score: 5.8
Sequence: AATTAAACGCGTGTTTGAAA
Locus tag: Shew_0540
Name: echH
Funciton: enoyl-CoA hydratase/isomerase family protein
Shew_0540
echH
enoyl-CoA hydratase/isomerase family protein
Position: -199
Score: 4.9
Sequence: ATTCAAACAATTATATGAAA
Position: -186
Score: 5.5
Sequence: TATGAAACAAGTGTTTAAAT
Locus tag: Shew_3003
Name: fadE3
Funciton: acyl-CoA dehydrogenase
Shew_3003
fadE3
acyl-CoA dehydrogenase
Position: -329
Score: 5.8
Sequence: ATTTAAATAAGTGTTTAAAT
Locus tag: Shew_1651
Name: sdhC
Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Shew_1652
Name: sdhD
Funciton: succinate dehydrogenase subunit D
Locus tag: Shew_1653
Name: sdhA
Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Shew_1654
Name: sdhB
Funciton: succinate dehydrogenase, iron-sulfur protein
Shew_1651
sdhC
succinate dehydrogenase, cytochrome b556 subunit
Shew_1652
sdhD
succinate dehydrogenase subunit D
Shew_1653
sdhA
succinate dehydrogenase, flavoprotein subunit
Shew_1654
sdhB
succinate dehydrogenase, iron-sulfur protein
Position: -41
Score: 6.1
Sequence: ATTAAAACGACTGTTTTAAT
Locus tag: Shew_1961
Name: acdH
Funciton: acyl-CoA dehydrogenase family protein
Shew_1961
acdH
acyl-CoA dehydrogenase family protein
Position: -35
Score: 5.4
Sequence: AACTAAACACTTGTTTGAAA
Locus tag: Shew_3772
Name: SO0080
Funciton: thioesterase superfamily protein
Shew_3772
SO0080
thioesterase superfamily protein
Position: -166
Score: 5.4
Sequence: AACCAAACAGGTGTTTAAAA
Locus tag: Shew_2426
Name: fadI
Funciton: fatty oxidation complex, beta subunit
Locus tag: Shew_2425
Name: fadJ
Funciton: fatty oxidation complex, alpha subunit
Shew_2426
fadI
fatty oxidation complex, beta subunit
Shew_2425
fadJ
fatty oxidation complex, alpha subunit
Position: -155
Score: 5.5
Sequence: AGTTAAACAATTGTTTGAAA
Locus tag: Shew_2108
Name: fadE2
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Shew_2108
fadE2
oxidoreductase, acyl-CoA dehydrogenase family
Position: -116
Score: 6
Sequence: ATTAAAACATGTGTTTAATT
Locus tag: Shew_0590
Name: SO0881
Funciton: conserved hypothetical protein
Locus tag: Shew_0591
Name: SO0882
Funciton: oxidoreductase, GMC family
Shew_0590
SO0881
conserved hypothetical protein
Shew_0591
SO0882
oxidoreductase, GMC family
Position: -31
Score: 5
Sequence: TTTAAATCACTTGTTTAAAA
Position: -18
Score: 5.4
Sequence: TTTAAAAAGGATGTTTAAAT
Locus tag: Shew_1942
Name: fadH
Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
Shew_1942
fadH
NADP-dependent 2,4-dienoyl-CoA reductase
Position: -130
Score: 5.3
Sequence: TGTTAAACGATTGTTTTATT
Position: -70
Score: 5.1
Sequence: GTCTAAACACCTGTTTGATT
Locus tag: Shew_3084
Name: fadD2
Funciton: long-chain-fatty-acid--CoA ligase
Shew_3084
fadD2
long-chain-fatty-acid--CoA ligase
Position: -39
Score: 6.2
Sequence: ATTTAAACACACGTTTAAAT
Locus tag: Shew_2052
Name: psrA
Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Shew_2051
Name: fadE1
Funciton: oxidoreductase, acyl-CoA dehydrogenase family
Shew_2052
psrA
fatty acid degradation transcriptional regulator, TetR family
Shew_2051
fadE1
oxidoreductase, acyl-CoA dehydrogenase family
Position: -161
Score: 6.1
Sequence: AATTAAACAAGTGTTTAAAT
Locus tag: Shew_0019
Name: fadB
Funciton: fatty oxidation complex, alpha subunit
Locus tag: Shew_0018
Name: fadA
Funciton: fatty oxidation complex, beta subunit
Shew_0019
fadB
fatty oxidation complex, alpha subunit
Shew_0018
fadA
fatty oxidation complex, beta subunit
Position: -527
Score: 5.9
Sequence: ATTAAAACGCGCGTTTGATT
Locus tag: Shew_1275
Name: aceB
Funciton: malate synthase A
Locus tag: Shew_1276
Name: aceA
Funciton: isocitrate lyase
Shew_1275
aceB
malate synthase A
Shew_1276
aceA
isocitrate lyase
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