Regulon of PsrA in Shewanella sp MR-4
| Regulator type: | Transcription factor |
| TF locus tag: | Shewmr4_2050 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 25 |
| - Operons | 16 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -86
Score: 4.5 Sequence: TTTCATTCATTTGTTTGAAA
Position: -73
Score: 4.5 Sequence: TTTGAAACATGCGTTTAGCA
Locus tag: Shewmr4_1468
Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family |
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SO2935
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oxidoreductase, short-chain dehydrogenase/reductase family
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Position: -78
Score: 5.9 Sequence: ATTAAAACGTGTGTTTAATT
Locus tag: Shewmr4_0737
Name: SO0881 Funciton: conserved hypothetical protein
Locus tag: Shewmr4_0738
Name: SO0882 Funciton: oxidoreductase, GMC family |
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SO0881
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conserved hypothetical protein
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SO0882
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oxidoreductase, GMC family
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Position: -121
Score: 5.2 Sequence: ATGCAAACAGGCGTTTGAGT
Locus tag: Shewmr4_1352
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Shewmr4_1353
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
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electron transfer flavoprotein, alpha subunit
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Position: -80
Score: 6.1 Sequence: AATTAAACATCTGTTTGAAT
Locus tag: Shewmr4_3240
Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein |
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echH
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enoyl-CoA hydratase/isomerase family protein
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Position: -74
Score: 5.4 Sequence: AATAAAACGCCCGTTTACAA
Locus tag: Shewmr4_0272
Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase |
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etfD
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electron-transferring-flavoprotein dehydrogenase
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Position: -331
Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT
Locus tag: Shewmr4_1631
Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Shewmr4_1632
Name: sdhD Funciton: succinate dehydrogenase subunit D
Locus tag: Shewmr4_1633
Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Shewmr4_1634
Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein |
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sdhC
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succinate dehydrogenase, cytochrome b556 subunit
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sdhD
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succinate dehydrogenase subunit D
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sdhA
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succinate dehydrogenase, flavoprotein subunit
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sdhB
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succinate dehydrogenase, iron-sulfur protein
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Position: -31
Score: 5 Sequence: TTTAAATCACTTGTTTAAAA
Position: -18
Score: 5.4 Sequence: TTTAAAAAGGATGTTTGAAT
Locus tag: Shewmr4_1910
Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase |
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fadH
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NADP-dependent 2,4-dienoyl-CoA reductase
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Position: -167
Score: 5.4 Sequence: AAACAAACAGGTGTTTAAAA
Locus tag: Shewmr4_1407
Name: fadI Funciton: fatty oxidation complex, beta subunit
Locus tag: Shewmr4_1408
Name: fadJ Funciton: fatty oxidation complex, alpha subunit |
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fadI
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fatty oxidation complex, beta subunit
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fadJ
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fatty oxidation complex, alpha subunit
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Position: -105
Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT
Locus tag: Shewmr4_1630
Name: gltA Funciton: citrate synthase |
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gltA
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citrate synthase
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Position: -62
Score: 5.6 Sequence: ATCTAAACACTCGTTTGATT
Locus tag: Shewmr4_0883
Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD2
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long-chain-fatty-acid--CoA ligase
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Position: -136
Score: 5.5 Sequence: ATTAAAACGCCCGTATGATT
Locus tag: Shewmr4_2177
Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD1
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long-chain-fatty-acid--CoA ligase
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Position: -162
Score: 6.1 Sequence: AATTAAACAGTCGTTTAAAT
Locus tag: Shewmr4_0018
Name: fadB Funciton: fatty oxidation complex, alpha subunit
Locus tag: Shewmr4_0017
Name: fadA Funciton: fatty oxidation complex, beta subunit |
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fadB
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fatty oxidation complex, alpha subunit
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fadA
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fatty oxidation complex, beta subunit
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Position: -38
Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA
Locus tag: Shewmr4_2050
Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Shewmr4_2049
Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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psrA
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fatty acid degradation transcriptional regulator, TetR family
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fadE1
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -156
Score: 5.9 Sequence: ATTTAAACAATTGTTTGAAA
Locus tag: Shewmr4_2146
Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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fadE2
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -41
Score: 6.2 Sequence: ATTAAAACAACTGTTTAAAT
Locus tag: Shewmr4_1931
Name: acdH Funciton: acyl-CoA dehydrogenase family protein |
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acdH
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acyl-CoA dehydrogenase family protein
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Position: -507
Score: 5.2 Sequence: AGTTAAACGAGTGTTTAAAC
Locus tag: Shewmr4_2767
Name: aceB Funciton: malate synthase A
Locus tag: Shewmr4_2766
Name: aceA Funciton: isocitrate lyase |
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aceB
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malate synthase A
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aceA
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isocitrate lyase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |