Regulon of PsrA in Shewanella woodyi ATCC 51908
| Regulator type: | Transcription factor |
| TF locus tag: | Swoo_2543 |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Regulog: | PsrA - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 24 |
| - Operons | 17 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -86
Score: 5.1 Sequence: AATTAATCATTTGTTTTAAA
Locus tag: Swoo_2905
Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family |
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SO2935
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oxidoreductase, short-chain dehydrogenase/reductase family
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Position: -50
Score: 5.7 Sequence: AGTCAAACGCATGTTTGAAT
Locus tag: Swoo_4857
Name: SO0080 Funciton: thioesterase superfamily protein |
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SO0080
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thioesterase superfamily protein
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Position: -40
Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT
Locus tag: Swoo_2323
Name: acdH Funciton: acyl-CoA dehydrogenase family protein |
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acdH
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acyl-CoA dehydrogenase family protein
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Position: -351
Score: 5.7 Sequence: ATTTAAATAACCGTTTAAAT
Locus tag: Swoo_1833
Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit
Locus tag: Swoo_1834
Name: sdhD Funciton: succinate dehydrogenase subunit D
Locus tag: Swoo_1835
Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit
Locus tag: Swoo_1836
Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein |
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sdhC
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succinate dehydrogenase, cytochrome b556 subunit
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sdhD
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succinate dehydrogenase subunit D
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sdhA
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succinate dehydrogenase, flavoprotein subunit
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sdhB
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succinate dehydrogenase, iron-sulfur protein
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Position: -78
Score: 6.1 Sequence: AATTAAACACTTGTTTGAAT
Locus tag: Swoo_4199
Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein |
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echH
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enoyl-CoA hydratase/isomerase family protein
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Position: -100
Score: 5.7 Sequence: ATTTAAACGGTTATTTAAAT
Locus tag: Swoo_1832
Name: gltA Funciton: citrate synthase |
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gltA
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citrate synthase
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Position: -123
Score: 5.4 Sequence: ATACAAACGGGCGTTTGAAA
Locus tag: Swoo_3236
Name: etfB Funciton: electron transfer flavoprotein, beta subunit
Locus tag: Swoo_3235
Name: etfA Funciton: electron transfer flavoprotein, alpha subunit |
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etfB
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electron transfer flavoprotein, beta subunit
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etfA
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electron transfer flavoprotein, alpha subunit
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Position: -536
Score: 5.3 Sequence: ATTGAAACGCTTGTTTAAAC
Locus tag: Swoo_1528
Name: aceB Funciton: malate synthase A |
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aceB
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malate synthase A
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Position: -166
Score: 6.1 Sequence: AATCAAACAAGTGTTTAAAT
Locus tag: Swoo_0021
Name: fadB Funciton: fatty oxidation complex, alpha subunit
Locus tag: Swoo_0020
Name: fadA Funciton: fatty oxidation complex, beta subunit |
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fadB
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fatty oxidation complex, alpha subunit
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fadA
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fatty oxidation complex, beta subunit
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Position: -95
Score: 5.7 Sequence: ATCTAAACACCTGTTTGATT
Locus tag: Swoo_3995
Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD2
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long-chain-fatty-acid--CoA ligase
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Position: -158
Score: 5.8 Sequence: ATTTAAACGTTTGTTTTAAA
Locus tag: Swoo_2604
Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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fadE2
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -170
Score: 5.4 Sequence: AACCAAACAAGTGTTTAAAA
Locus tag: Swoo_3027
Name: fadI Funciton: fatty oxidation complex, beta subunit
Locus tag: Swoo_3026
Name: fadJ Funciton: fatty oxidation complex, alpha subunit |
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fadI
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fatty oxidation complex, beta subunit
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fadJ
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fatty oxidation complex, alpha subunit
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Position: -98
Score: 6.2 Sequence: ATTCAAACAATTGTTTAAAT
Locus tag: Swoo_1504
Name: fadE3 Funciton: acyl-CoA dehydrogenase |
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fadE3
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acyl-CoA dehydrogenase
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Position: -134
Score: 5.7 Sequence: ATTAAAACGCCTGTATGAAT
Locus tag: Swoo_2110
Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase |
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fadD1
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long-chain-fatty-acid--CoA ligase
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Position: -31
Score: 5 Sequence: TTTAAATCAGTTGTTTTAAA
Position: -18
Score: 5.4 Sequence: TTTTAAAAGGATGTTTGAAT
Locus tag: Swoo_2300
Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase |
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fadH
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NADP-dependent 2,4-dienoyl-CoA reductase
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Position: -41
Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA
Locus tag: Swoo_2543
Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family
Locus tag: Swoo_2542
Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family |
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psrA
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fatty acid degradation transcriptional regulator, TetR family
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fadE1
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oxidoreductase, acyl-CoA dehydrogenase family
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Position: -45
Score: 5.2 Sequence: ATTAAAACACCCGTTTAACG
Locus tag: Swoo_4794
Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase |
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etfD
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electron-transferring-flavoprotein dehydrogenase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |