Regulon of PsrA in Shewanella woodyi ATCC 51908

Properties
Regulator type:	Transcription factor
TF locus tag:	Swoo_2543
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes	24
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 295 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -86 Score: 5.1 Sequence: AATTAATCATTTGTTTTAAA Locus tag: Swoo_2905 Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
	Swoo_2905	SO2935	oxidoreductase, short-chain dehydrogenase/reductase family
Position: -50 Score: 5.7 Sequence: AGTCAAACGCATGTTTGAAT Locus tag: Swoo_4857 Name: SO0080 Funciton: thioesterase superfamily protein
	Swoo_4857	SO0080	thioesterase superfamily protein
Position: -40 Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT Locus tag: Swoo_2323 Name: acdH Funciton: acyl-CoA dehydrogenase family protein
	Swoo_2323	acdH	acyl-CoA dehydrogenase family protein
Position: -351 Score: 5.7 Sequence: ATTTAAATAACCGTTTAAAT Locus tag: Swoo_1833 Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit Locus tag: Swoo_1834 Name: sdhD Funciton: succinate dehydrogenase subunit D Locus tag: Swoo_1835 Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit Locus tag: Swoo_1836 Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein
	Swoo_1833	sdhC	succinate dehydrogenase, cytochrome b556 subunit
	Swoo_1834	sdhD	succinate dehydrogenase subunit D
	Swoo_1835	sdhA	succinate dehydrogenase, flavoprotein subunit
	Swoo_1836	sdhB	succinate dehydrogenase, iron-sulfur protein
Position: -78 Score: 6.1 Sequence: AATTAAACACTTGTTTGAAT Locus tag: Swoo_4199 Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein
	Swoo_4199	echH	enoyl-CoA hydratase/isomerase family protein
Position: -100 Score: 5.7 Sequence: ATTTAAACGGTTATTTAAAT Locus tag: Swoo_1832 Name: gltA Funciton: citrate synthase
	Swoo_1832	gltA	citrate synthase
Position: -123 Score: 5.4 Sequence: ATACAAACGGGCGTTTGAAA Locus tag: Swoo_3236 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Swoo_3235 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Swoo_3236	etfB	electron transfer flavoprotein, beta subunit
	Swoo_3235	etfA	electron transfer flavoprotein, alpha subunit
Position: -536 Score: 5.3 Sequence: ATTGAAACGCTTGTTTAAAC Locus tag: Swoo_1528 Name: aceB Funciton: malate synthase A
	Swoo_1528	aceB	malate synthase A
Position: -166 Score: 6.1 Sequence: AATCAAACAAGTGTTTAAAT Locus tag: Swoo_0021 Name: fadB Funciton: fatty oxidation complex, alpha subunit Locus tag: Swoo_0020 Name: fadA Funciton: fatty oxidation complex, beta subunit
	Swoo_0021	fadB	fatty oxidation complex, alpha subunit
	Swoo_0020	fadA	fatty oxidation complex, beta subunit
Position: -95 Score: 5.7 Sequence: ATCTAAACACCTGTTTGATT Locus tag: Swoo_3995 Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase
	Swoo_3995	fadD2	long-chain-fatty-acid--CoA ligase
Position: -158 Score: 5.8 Sequence: ATTTAAACGTTTGTTTTAAA Locus tag: Swoo_2604 Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Swoo_2604	fadE2	oxidoreductase, acyl-CoA dehydrogenase family
Position: -170 Score: 5.4 Sequence: AACCAAACAAGTGTTTAAAA Locus tag: Swoo_3027 Name: fadI Funciton: fatty oxidation complex, beta subunit Locus tag: Swoo_3026 Name: fadJ Funciton: fatty oxidation complex, alpha subunit
	Swoo_3027	fadI	fatty oxidation complex, beta subunit
	Swoo_3026	fadJ	fatty oxidation complex, alpha subunit
Position: -98 Score: 6.2 Sequence: ATTCAAACAATTGTTTAAAT Locus tag: Swoo_1504 Name: fadE3 Funciton: acyl-CoA dehydrogenase
	Swoo_1504	fadE3	acyl-CoA dehydrogenase
Position: -134 Score: 5.7 Sequence: ATTAAAACGCCTGTATGAAT Locus tag: Swoo_2110 Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase
	Swoo_2110	fadD1	long-chain-fatty-acid--CoA ligase
Position: -31 Score: 5 Sequence: TTTAAATCAGTTGTTTTAAA Position: -18 Score: 5.4 Sequence: TTTTAAAAGGATGTTTGAAT Locus tag: Swoo_2300 Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
	Swoo_2300	fadH	NADP-dependent 2,4-dienoyl-CoA reductase
Position: -41 Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA Locus tag: Swoo_2543 Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family Locus tag: Swoo_2542 Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Swoo_2543	psrA	fatty acid degradation transcriptional regulator, TetR family
	Swoo_2542	fadE1	oxidoreductase, acyl-CoA dehydrogenase family
Position: -45 Score: 5.2 Sequence: ATTAAAACACCCGTTTAACG Locus tag: Swoo_4794 Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase
	Swoo_4794	etfD	electron-transferring-flavoprotein dehydrogenase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PsrA in Shewanella woodyi ATCC 51908

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --