Regulog PsrA - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - PsrA
- By taxonomy - Burkholderia
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 7 | 2 |
| Burkholderia mallei ATCC 23344 | 7 | 2 |
| Burkholderia sp. 383 | 7 | 2 |
| Burkholderia cepacia AMMD | 7 | 2 |
| Burkholderia vietnamiensis G4 | 6 | 2 |
| Burkholderia glumae BGR1 | 7 | 2 |
| Burkholderia xenovorans LB400 | 11 | 2 |
| Burkholderia phymatum STM815 | 11 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| psrA |
*
Burkholderia pseudomallei K96243 Site: position = -74 score = 5.22417 sequence = ATGAAAACGGCTGTTTCAAT Gene: BPSL1882: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia mallei ATCC 23344 Site: position = -74 score = 5.22417 sequence = ATGAAAACGGCTGTTTCAAT Gene: BMA1275: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia sp. 383 Site: position = -73 score = 5.41146 sequence = ATAAAAACGACTGTTTGAAT Gene: Bcep18194_A4675: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia cepacia AMMD Site: position = -74 score = 5.62789 sequence = ATAAAAACGGCTGTTTGAAT Gene: Bamb_1417: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia vietnamiensis G4 Site: position = -74 score = 5.31925 sequence = ATAAAAACAGCCGTTTGAAT Gene: Bcep1808_1501: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia glumae BGR1 Site: position = -72 score = 5.29821 sequence = ATAAAAACGCTTGTTTCAAT Gene: bglu_1g19670: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia xenovorans LB400 Site: position = -76 score = 5.10587 sequence = AAAAAAACGGTCGTTTCAAA Gene: Bxe_A2773: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Burkholderia phymatum STM815 Site: position = -100 score = 4.33911 sequence = AAAAGAACGCACGTTTCAAA Gene: Bphy_1699: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
Transcriptional regulator for fatty acid degradation PsrA, TetR family |
| fadE |
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Gene: Bxe_A2774: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Bphy_1700: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| fabG |
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Gene: Bxe_A2775: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bphy_1701: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
| Bxe_A2776 |
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Gene: Bxe_A2776: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Gene: Bphy_1702: Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
Putative (R)-specific enoyl-CoA hydratase, MaoC- like |
| fadA |
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Gene: Bxe_A2777: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Bphy_1703: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| fadD |
Gene: BPSL1883: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: BMA1276: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Bcep18194_A4674: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Bamb_1416: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Bcep1808_1500: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: bglu_1g19680: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Bxe_A2778: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Gene: Bphy_1704: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| CRON 2. | |||||||||
| fabH |
*
Burkholderia pseudomallei K96243 Site: position = -177 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: BPSL2442: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia mallei ATCC 23344 Site: position = -177 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: BMA0530: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia sp. 383 Site: position = -178 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: Bcep18194_A4233: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia cepacia AMMD Site: position = -178 score = 5.34742 sequence = GATCAAACGGGGTTATGATG Gene: Bamb_0997: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia vietnamiensis G4 Site: position = -178 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: Bcep1808_1040: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia glumae BGR1 Site: position = -178 score = 5.72065 sequence = CATCAAACGCGGGTATGATG Gene: bglu_1g09510: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia xenovorans LB400 Site: position = -177 score = 5.77882 sequence = TATCAAACGCGGGTATGATG Gene: Bxe_A1072: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Burkholderia phymatum STM815 Site: position = -201 score = 6.00722 sequence = AATCAAACGCGGGTATGATG Gene: Bphy_0828: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
| fabD |
Gene: BPSL2441: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: BMA0531: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Bcep18194_A4234: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Bamb_0998: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Bcep1808_1041: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: bglu_1g09520: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Bxe_A1073: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Bphy_0829: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
| fabG |
Gene: BPSL2440: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: BMA0532: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bcep18194_A4235: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bamb_0999: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bcep1808_1042: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: bglu_1g09530: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bxe_A1074: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Bphy_0830: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
| acpP |
Gene: BPSL2439: Acyl carrier protein |
Gene: BMA0533: Acyl carrier protein |
Gene: Bcep18194_A4236: Acyl carrier protein |
Gene: Bamb_1000: Acyl carrier protein |
Gene: Bcep1808_1043: Acyl carrier protein |
Gene: bglu_1g09540: Acyl carrier protein |
Gene: Bxe_A1075: Acyl carrier protein |
Gene: Bphy_0831: Acyl carrier protein |
Acyl carrier protein |
| fabF |
Gene: BPSL2438: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: BMA0534: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Bcep18194_A4237: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Bamb_1001: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Bcep1808_1044: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: bglu_1g09550: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Bxe_A1076: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Bphy_0832: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |