Regulog PsrA - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By trascription factor - PsrA
By taxonomy - Burkholderia
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243	7	2
Burkholderia mallei ATCC 23344	7	2
Burkholderia sp. 383	7	2
Burkholderia cepacia AMMD	7	2
Burkholderia vietnamiensis G4	6	2
Burkholderia glumae BGR1	7	2
Burkholderia xenovorans LB400	11	2
Burkholderia phymatum STM815	11	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
psrA	* Burkholderia pseudomallei K96243 Site: position = -74 score = 5.22417 sequence = ATGAAAACGGCTGTTTCAAT Gene: BPSL1882: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia mallei ATCC 23344 Site: position = -74 score = 5.22417 sequence = ATGAAAACGGCTGTTTCAAT Gene: BMA1275: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia sp. 383 Site: position = -73 score = 5.41146 sequence = ATAAAAACGACTGTTTGAAT Gene: Bcep18194_A4675: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia cepacia AMMD Site: position = -74 score = 5.62789 sequence = ATAAAAACGGCTGTTTGAAT Gene: Bamb_1417: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia vietnamiensis G4 Site: position = -74 score = 5.31925 sequence = ATAAAAACAGCCGTTTGAAT Gene: Bcep1808_1501: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia glumae BGR1 Site: position = -72 score = 5.29821 sequence = ATAAAAACGCTTGTTTCAAT Gene: bglu_1g19670: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia xenovorans LB400 Site: position = -76 score = 5.10587 sequence = AAAAAAACGGTCGTTTCAAA Gene: Bxe_A2773: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Burkholderia phymatum STM815 Site: position = -100 score = 4.33911 sequence = AAAAGAACGCACGTTTCAAA Gene: Bphy_1699: Transcriptional regulator for fatty acid degradation PsrA, TetR family	Transcriptional regulator for fatty acid degradation PsrA, TetR family
fadE	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_A2774: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Burkholderia phymatum STM815 Gene: Bphy_1700: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fabG	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_A2775: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia phymatum STM815 Gene: Bphy_1701: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
Bxe_A2776	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_A2776: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Burkholderia phymatum STM815 Gene: Bphy_1702: Putative (R)-specific enoyl-CoA hydratase, MaoC- like	Putative (R)-specific enoyl-CoA hydratase, MaoC- like
fadA	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400 Gene: Bxe_A2777: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Burkholderia phymatum STM815 Gene: Bphy_1703: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
fadD	Burkholderia pseudomallei K96243 Gene: BPSL1883: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia mallei ATCC 23344 Gene: BMA1276: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia sp. 383 Gene: Bcep18194_A4674: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia cepacia AMMD Gene: Bamb_1416: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia vietnamiensis G4 Gene: Bcep1808_1500: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia glumae BGR1 Gene: bglu_1g19680: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia xenovorans LB400 Gene: Bxe_A2778: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Burkholderia phymatum STM815 Gene: Bphy_1704: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)	Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)

CRON 2.
fabH	* Burkholderia pseudomallei K96243 Site: position = -177 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: BPSL2442: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia mallei ATCC 23344 Site: position = -177 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: BMA0530: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia sp. 383 Site: position = -178 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: Bcep18194_A4233: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia cepacia AMMD Site: position = -178 score = 5.34742 sequence = GATCAAACGGGGTTATGATG Gene: Bamb_0997: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia vietnamiensis G4 Site: position = -178 score = 5.88868 sequence = GATCAAACGCGGGTATGATG Gene: Bcep1808_1040: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia glumae BGR1 Site: position = -178 score = 5.72065 sequence = CATCAAACGCGGGTATGATG Gene: bglu_1g09510: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia xenovorans LB400 Site: position = -177 score = 5.77882 sequence = TATCAAACGCGGGTATGATG Gene: Bxe_A1072: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Burkholderia phymatum STM815 Site: position = -201 score = 6.00722 sequence = AATCAAACGCGGGTATGATG Gene: Bphy_0828: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
fabD	Burkholderia pseudomallei K96243 Gene: BPSL2441: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia mallei ATCC 23344 Gene: BMA0531: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia sp. 383 Gene: Bcep18194_A4234: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia cepacia AMMD Gene: Bamb_0998: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia vietnamiensis G4 Gene: Bcep1808_1041: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia glumae BGR1 Gene: bglu_1g09520: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia xenovorans LB400 Gene: Bxe_A1073: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Burkholderia phymatum STM815 Gene: Bphy_0829: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)
fabG	Burkholderia pseudomallei K96243 Gene: BPSL2440: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia mallei ATCC 23344 Gene: BMA0532: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia sp. 383 Gene: Bcep18194_A4235: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia cepacia AMMD Gene: Bamb_0999: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia vietnamiensis G4 Gene: Bcep1808_1042: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia glumae BGR1 Gene: bglu_1g09530: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia xenovorans LB400 Gene: Bxe_A1074: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Burkholderia phymatum STM815 Gene: Bphy_0830: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
acpP	Burkholderia pseudomallei K96243 Gene: BPSL2439: Acyl carrier protein	Burkholderia mallei ATCC 23344 Gene: BMA0533: Acyl carrier protein	Burkholderia sp. 383 Gene: Bcep18194_A4236: Acyl carrier protein	Burkholderia cepacia AMMD Gene: Bamb_1000: Acyl carrier protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_1043: Acyl carrier protein	Burkholderia glumae BGR1 Gene: bglu_1g09540: Acyl carrier protein	Burkholderia xenovorans LB400 Gene: Bxe_A1075: Acyl carrier protein	Burkholderia phymatum STM815 Gene: Bphy_0831: Acyl carrier protein	Acyl carrier protein
fabF	Burkholderia pseudomallei K96243 Gene: BPSL2438: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia mallei ATCC 23344 Gene: BMA0534: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia sp. 383 Gene: Bcep18194_A4237: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia cepacia AMMD Gene: Bamb_1001: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia vietnamiensis G4 Gene: Bcep1808_1044: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia glumae BGR1 Gene: bglu_1g09550: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia xenovorans LB400 Gene: Bxe_A1076: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Burkholderia phymatum STM815 Gene: Bphy_0832: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PsrA - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --