Regulog PsrA - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid degradation |
| Effector: | Oleate |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - PsrA
- By TF family - TetR
- By effector - Oleate
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 3 | 1 |
| Ralstonia pickettii 12J | 3 | 1 |
| Ralstonia metallidurans CH34 | 5 | 1 |
| Ralstonia eutropha JMP134 | 6 | 2 |
| Ralstonia eutropha H16 | 6 | 2 |
| Cupriavidus taiwanensis | 6 | 2 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| fabH |
Gene: RSc1050: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
Gene: Rpic_0915: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Ralstonia metallidurans CH34 Site: position = -226 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: Rmet_2430: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Ralstonia eutropha JMP134 Site: position = -198 score = 2.48215 sequence = GATCAAACGCGGGTATGATG Gene: Reut_A2265: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Ralstonia eutropha H16 Site: position = -200 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: H16_A2569: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
*
Cupriavidus taiwanensis Site: position = -201 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: RALTA_A2072: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) |
| fabD |
Gene: RSc1051: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Rpic_0916: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Rmet_2429: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: Reut_A2264: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: H16_A2568: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Gene: RALTA_A2071: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) |
| fabG |
Gene: RSc1052: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Rpic_0917: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Rmet_2428: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Reut_A2263: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: H16_A2567: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: RALTA_A2070: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
| acpP |
Gene: RSc1053: Acyl carrier protein |
Gene: Rpic_0918: Acyl carrier protein |
Gene: Rmet_2427: Acyl carrier protein |
Gene: Reut_A2262: Acyl carrier protein |
Gene: H16_A2566: Acyl carrier protein |
Gene: RALTA_A2069: Acyl carrier protein |
Acyl carrier protein |
| fabF |
Gene: RSc1054: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Rpic_0919: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Rmet_2426: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: Reut_A2261: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: H16_A2565: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
Gene: RALTA_A2067: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41) |
| CRON 2. | |||||||
| psrA |
*
Ralstonia solanacearum GMI1000 Site: position = -122 score = 4.62286 sequence = TTTAAAACATCCGTTCCTAA Gene: RS04928: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Ralstonia pickettii 12J Site: position = -121 score = 4.47718 sequence = TTTCAAACGTCTGTTCCTAA Gene: Rpic_0418: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
Gene: Rmet_3595: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Ralstonia eutropha JMP134 Site: position = -120 score = 3.62337 sequence = ATTAGAGCAGGCATTCGAAT Gene: Reut_A3446: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Ralstonia eutropha H16 Site: position = -104 score = 4.01482 sequence = CTTCGTACAGCTGTTTCAAG Gene: H16_A3736: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
*
Cupriavidus taiwanensis Site: position = -105 score = 4.01482 sequence = CTTCGTACAGCTGTTTCAAG Gene: RALTA_A3194: Transcriptional regulator for fatty acid degradation PsrA, TetR family |
Transcriptional regulator for fatty acid degradation PsrA, TetR family |
| fadE |
Gene: RS04929: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
Gene: Rpic_0417: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
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Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) |
| fabG |
Gene: RS04930: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Gene: Rpic_0416: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
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3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |