Regulog PsrA - Ralstonia

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Ralstonia
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Ralstonia solanacearum GMI1000	3	1
Ralstonia pickettii 12J	3	1
Ralstonia metallidurans CH34	5	1
Ralstonia eutropha JMP134	6	2
Ralstonia eutropha H16	6	2
Cupriavidus taiwanensis	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
fabH	Ralstonia solanacearum GMI1000 Gene: RSc1050: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	Ralstonia pickettii 12J Gene: Rpic_0915: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Ralstonia metallidurans CH34 Site: position = -226 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: Rmet_2430: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Ralstonia eutropha JMP134 Site: position = -198 score = 2.48215 sequence = GATCAAACGCGGGTATGATG Gene: Reut_A2265: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Ralstonia eutropha H16 Site: position = -200 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: H16_A2569: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	* Cupriavidus taiwanensis Site: position = -201 score = 2.48215 sequence = CATCAAACGCGGGTATGATG Gene: RALTA_A2072: 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)	3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41)
fabD	Ralstonia solanacearum GMI1000 Gene: RSc1051: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Ralstonia pickettii 12J Gene: Rpic_0916: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Ralstonia metallidurans CH34 Gene: Rmet_2429: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Ralstonia eutropha JMP134 Gene: Reut_A2264: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Ralstonia eutropha H16 Gene: H16_A2568: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Cupriavidus taiwanensis Gene: RALTA_A2071: Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)	Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39)
fabG	Ralstonia solanacearum GMI1000 Gene: RSc1052: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia pickettii 12J Gene: Rpic_0917: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia metallidurans CH34 Gene: Rmet_2428: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia eutropha JMP134 Gene: Reut_A2263: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia eutropha H16 Gene: H16_A2567: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Cupriavidus taiwanensis Gene: RALTA_A2070: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
acpP	Ralstonia solanacearum GMI1000 Gene: RSc1053: Acyl carrier protein	Ralstonia pickettii 12J Gene: Rpic_0918: Acyl carrier protein	Ralstonia metallidurans CH34 Gene: Rmet_2427: Acyl carrier protein	Ralstonia eutropha JMP134 Gene: Reut_A2262: Acyl carrier protein	Ralstonia eutropha H16 Gene: H16_A2566: Acyl carrier protein	Cupriavidus taiwanensis Gene: RALTA_A2069: Acyl carrier protein	Acyl carrier protein
fabF	Ralstonia solanacearum GMI1000 Gene: RSc1054: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Ralstonia pickettii 12J Gene: Rpic_0919: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Ralstonia metallidurans CH34 Gene: Rmet_2426: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Ralstonia eutropha JMP134 Gene: Reut_A2261: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Ralstonia eutropha H16 Gene: H16_A2565: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	Cupriavidus taiwanensis Gene: RALTA_A2067: 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)	3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.41)

CRON 2.
psrA	* Ralstonia solanacearum GMI1000 Site: position = -122 score = 4.62286 sequence = TTTAAAACATCCGTTCCTAA Gene: RS04928: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Ralstonia pickettii 12J Site: position = -121 score = 4.47718 sequence = TTTCAAACGTCTGTTCCTAA Gene: Rpic_0418: Transcriptional regulator for fatty acid degradation PsrA, TetR family	Ralstonia metallidurans CH34 Gene: Rmet_3595: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Ralstonia eutropha JMP134 Site: position = -120 score = 3.62337 sequence = ATTAGAGCAGGCATTCGAAT Gene: Reut_A3446: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Ralstonia eutropha H16 Site: position = -104 score = 4.01482 sequence = CTTCGTACAGCTGTTTCAAG Gene: H16_A3736: Transcriptional regulator for fatty acid degradation PsrA, TetR family	* Cupriavidus taiwanensis Site: position = -105 score = 4.01482 sequence = CTTCGTACAGCTGTTTCAAG Gene: RALTA_A3194: Transcriptional regulator for fatty acid degradation PsrA, TetR family	Transcriptional regulator for fatty acid degradation PsrA, TetR family
fadE	Ralstonia solanacearum GMI1000 Gene: RS04929: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Ralstonia pickettii 12J Gene: Rpic_0417: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fabG	Ralstonia solanacearum GMI1000 Gene: RS04930: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia pickettii 12J Gene: Rpic_0416: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)	Ralstonia metallidurans CH34	Ralstonia eutropha JMP134	Ralstonia eutropha H16	Cupriavidus taiwanensis	3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PsrA - Ralstonia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --