Regulog Cobalamin - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 1 | 1 |
| Vibrio vulnificus CMCP6 | 3 | 1 |
| Vibrio harveyi ATCC BAA-1116 | 1 | 1 |
| Vibrio parahaemolyticus RIMD 2210633 | 3 | 1 |
| Vibrio shilonii AK1 | 1 | 1 |
| Vibrio splendidus LGP32 | 14 | 2 |
| Vibrio fischeri ES114 | 6 | 2 |
| Vibrio salmonicida LFI1238 | 6 | 2 |
| Vibrio angustum S14 | 1 | 1 |
| Photobacterium profundum SS9 | 3 | 1 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| btuB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -246 score = 104.79 sequence = ACTATCAGCGCCAAG... Gene: VC0156: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio vulnificus CMCP6 Site: position = -249 score = 101.81 sequence = AGTATGCGCTTCAAG... Gene: VV1_1173: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -260 score = 99.89 sequence = ATAGTATTTGCCCCA... Gene: VIBHAR_00261: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -260 score = 100.24 sequence = ATAATATTTGCCTCA... Gene: VP2938: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio shilonii AK1 Site: position = -261 score = 98.9 sequence = TACCATTCCGCCTAG... Gene: VSAK1_13281: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio splendidus LGP32 Site: position = -244 score = 100.46 sequence = ATACTATTTCCGGCA... Gene: VS_2998: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio fischeri ES114 Site: position = -265 score = 91.95 sequence = CTACTATTTCGCCCA... Gene: VF_2435: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio salmonicida LFI1238 Site: position = -277 score = 75.19 sequence = CTACTATTTCGGCCA... Gene: VSAL_I2886: Outer membrane vitamin B12 receptor BtuB |
*
Vibrio angustum S14 Site: position = -272 score = 56.3 sequence = AGCATCTGCCCTGCG... Gene: VAS14_23134: Outer membrane vitamin B12 receptor BtuB |
*
Photobacterium profundum SS9 Site: position = -263 score = 61.98 sequence = ACTAGCATCGCAGTG... Gene: PBPRA3464: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| COG2102 |
|
Gene: VV1_1174: Hypothetical amidotransferase related to B12 salvage |
Gene: VIBHAR_00257: Hypothetical amidotransferase related to B12 salvage |
Gene: VP2937: Hypothetical amidotransferase related to B12 salvage |
Gene: VSAK1_13291: Hypothetical amidotransferase related to B12 salvage |
Gene: VS_2997: Hypothetical amidotransferase related to B12 salvage |
Gene: VF_2434: Hypothetical amidotransferase related to B12 salvage |
Gene: VSAL_I2885: Hypothetical amidotransferase related to B12 salvage |
|
Gene: PBPRA3463: Hypothetical amidotransferase related to B12 salvage |
Hypothetical amidotransferase related to B12 salvage |
| COG0796 |
Gene: VC0158: putative glutamate racemase (EC 5.1.1.3) |
Gene: VV1_1175: putative glutamate racemase (EC 5.1.1.3) |
Gene: VIBHAR_00256: putative glutamate racemase (EC 5.1.1.3) |
Gene: VP2936: putative glutamate racemase (EC 5.1.1.3) |
Gene: VSAK1_13296: putative glutamate racemase (EC 5.1.1.3) |
Gene: VS_2996: putative glutamate racemase (EC 5.1.1.3) |
Gene: VF_2433: putative glutamate racemase (EC 5.1.1.3) |
Gene: VSAL_I2884: putative glutamate racemase (EC 5.1.1.3) |
Gene: VAS14_23139: putative glutamate racemase (EC 5.1.1.3) |
Gene: PBPRA3462: putative glutamate racemase (EC 5.1.1.3) |
putative glutamate racemase (EC 5.1.1.3) |
| CRON 2. | |||||||||||
| btuF |
|
|
|
|
|
|
*
Vibrio fischeri ES114 Site: position = -150 score = 31.51 sequence = GATAGAATATCTCAA... Gene: VF_A0973: Vitamin B12 ABC transporter, B12-binding component BtuF |
*
Vibrio salmonicida LFI1238 Site: position = -127 score = 29.04 sequence = GAATACGGTGAAACT... Gene: VSAL_II1074: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: VAS14_22432: Vitamin B12 ABC transporter, B12-binding component BtuF |
|
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
|
|
|
|
|
|
Gene: VF_A0972: Vitamin B12 ABC transporter, permease component BtuC |
Gene: VSAL_II1075: Vitamin B12 ABC transporter, permease component BtuC |
Gene: VAS14_22437: Vitamin B12 ABC transporter, permease component BtuC |
|
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
|
|
|
|
|
|
Gene: VF_A0971: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: VSAL_II1076: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: VAS14_22442: Vitamin B12 ABC transporter, ATPase component BtuD |
|
Vitamin B12 ABC transporter, ATPase component BtuD |
| CRON 3. | |||||||||||
| cbiD |
|
|
|
|
|
*
Vibrio splendidus LGP32 Site: position = -223 score = 82.98 sequence = GGGAATCAGGTGTAA... Gene: VS_2661: Cobalt-precorrin-6 synthase, anaerobic |
|
|
|
|
Cobalt-precorrin-6 synthase, anaerobic |
| cbiC |
|
|
|
|
|
Gene: VS_2662: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
|
|
|
|
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) |
| cbiET |
|
|
|
|
|
Gene: VS_2663: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
|
|
|
|
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) |
| cbiL |
|
|
|
|
|
Gene: VS_2664: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
|
|
|
|
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) |
| cbiG |
|
|
|
|
|
Gene: VS_2665: Cobalamin biosynthesis protein CbiG |
|
|
|
|
Cobalamin biosynthesis protein CbiG |
| cbiK |
|
|
|
|
|
Gene: VS_2666: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
|
|
|
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Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) |
| cbiH |
|
|
|
|
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Gene: VS_2667: Cobalt-precorrin-3b C17-methyltransferase |
|
|
|
|
Cobalt-precorrin-3b C17-methyltransferase |
| cbiF |
|
|
|
|
|
Gene: VS_2668: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
|
|
|
|
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) |
| cbiB |
|
|
|
|
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Gene: VS_2669: Adenosylcobinamide-phosphate synthase |
|
|
|
|
Adenosylcobinamide-phosphate synthase |
| cobD |
|
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|
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Gene: VS_2670: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
|
|
|
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
| cbiA |
|
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|
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Gene: VS_2671: Cobyrinic acid A,C-diamide synthase |
|
|
|
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Cobyrinic acid A,C-diamide synthase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |