Regulog Cobalamin - Vibrionales

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Vibrionales
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	1	1
Vibrio vulnificus CMCP6	3	1
Vibrio harveyi ATCC BAA-1116	1	1
Vibrio parahaemolyticus RIMD 2210633	3	1
Vibrio shilonii AK1	1	1
Vibrio splendidus LGP32	14	2
Vibrio fischeri ES114	6	2
Vibrio salmonicida LFI1238	6	2
Vibrio angustum S14	1	1
Photobacterium profundum SS9	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
btuB	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -246 score = 104.79 sequence = ACTATCAGCGCCAAG... Gene: VC0156: Outer membrane vitamin B12 receptor BtuB	* Vibrio vulnificus CMCP6 Site: position = -249 score = 101.81 sequence = AGTATGCGCTTCAAG... Gene: VV1_1173: Outer membrane vitamin B12 receptor BtuB	* Vibrio harveyi ATCC BAA-1116 Site: position = -260 score = 99.89 sequence = ATAGTATTTGCCCCA... Gene: VIBHAR_00261: Outer membrane vitamin B12 receptor BtuB	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -260 score = 100.24 sequence = ATAATATTTGCCTCA... Gene: VP2938: Outer membrane vitamin B12 receptor BtuB	* Vibrio shilonii AK1 Site: position = -261 score = 98.9 sequence = TACCATTCCGCCTAG... Gene: VSAK1_13281: Outer membrane vitamin B12 receptor BtuB	* Vibrio splendidus LGP32 Site: position = -244 score = 100.46 sequence = ATACTATTTCCGGCA... Gene: VS_2998: Outer membrane vitamin B12 receptor BtuB	* Vibrio fischeri ES114 Site: position = -265 score = 91.95 sequence = CTACTATTTCGCCCA... Gene: VF_2435: Outer membrane vitamin B12 receptor BtuB	* Vibrio salmonicida LFI1238 Site: position = -277 score = 75.19 sequence = CTACTATTTCGGCCA... Gene: VSAL_I2886: Outer membrane vitamin B12 receptor BtuB	* Vibrio angustum S14 Site: position = -272 score = 56.3 sequence = AGCATCTGCCCTGCG... Gene: VAS14_23134: Outer membrane vitamin B12 receptor BtuB	* Photobacterium profundum SS9 Site: position = -263 score = 61.98 sequence = ACTAGCATCGCAGTG... Gene: PBPRA3464: Outer membrane vitamin B12 receptor BtuB	Outer membrane vitamin B12 receptor BtuB
COG2102	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_1174: Hypothetical amidotransferase related to B12 salvage	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00257: Hypothetical amidotransferase related to B12 salvage	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2937: Hypothetical amidotransferase related to B12 salvage	Vibrio shilonii AK1 Gene: VSAK1_13291: Hypothetical amidotransferase related to B12 salvage	Vibrio splendidus LGP32 Gene: VS_2997: Hypothetical amidotransferase related to B12 salvage	Vibrio fischeri ES114 Gene: VF_2434: Hypothetical amidotransferase related to B12 salvage	Vibrio salmonicida LFI1238 Gene: VSAL_I2885: Hypothetical amidotransferase related to B12 salvage	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA3463: Hypothetical amidotransferase related to B12 salvage	Hypothetical amidotransferase related to B12 salvage
COG0796	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0158: putative glutamate racemase (EC 5.1.1.3)	Vibrio vulnificus CMCP6 Gene: VV1_1175: putative glutamate racemase (EC 5.1.1.3)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00256: putative glutamate racemase (EC 5.1.1.3)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2936: putative glutamate racemase (EC 5.1.1.3)	Vibrio shilonii AK1 Gene: VSAK1_13296: putative glutamate racemase (EC 5.1.1.3)	Vibrio splendidus LGP32 Gene: VS_2996: putative glutamate racemase (EC 5.1.1.3)	Vibrio fischeri ES114 Gene: VF_2433: putative glutamate racemase (EC 5.1.1.3)	Vibrio salmonicida LFI1238 Gene: VSAL_I2884: putative glutamate racemase (EC 5.1.1.3)	Vibrio angustum S14 Gene: VAS14_23139: putative glutamate racemase (EC 5.1.1.3)	Photobacterium profundum SS9 Gene: PBPRA3462: putative glutamate racemase (EC 5.1.1.3)	putative glutamate racemase (EC 5.1.1.3)

CRON 2.
btuF	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio fischeri ES114 Site: position = -150 score = 31.51 sequence = GATAGAATATCTCAA... Gene: VF_A0973: Vitamin B12 ABC transporter, B12-binding component BtuF	* Vibrio salmonicida LFI1238 Site: position = -127 score = 29.04 sequence = GAATACGGTGAAACT... Gene: VSAL_II1074: Vitamin B12 ABC transporter, B12-binding component BtuF	Vibrio angustum S14 Gene: VAS14_22432: Vitamin B12 ABC transporter, B12-binding component BtuF	Photobacterium profundum SS9	Vitamin B12 ABC transporter, B12-binding component BtuF
btuC	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A0972: Vitamin B12 ABC transporter, permease component BtuC	Vibrio salmonicida LFI1238 Gene: VSAL_II1075: Vitamin B12 ABC transporter, permease component BtuC	Vibrio angustum S14 Gene: VAS14_22437: Vitamin B12 ABC transporter, permease component BtuC	Photobacterium profundum SS9	Vitamin B12 ABC transporter, permease component BtuC
btuD	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114 Gene: VF_A0971: Vitamin B12 ABC transporter, ATPase component BtuD	Vibrio salmonicida LFI1238 Gene: VSAL_II1076: Vitamin B12 ABC transporter, ATPase component BtuD	Vibrio angustum S14 Gene: VAS14_22442: Vitamin B12 ABC transporter, ATPase component BtuD	Photobacterium profundum SS9	Vitamin B12 ABC transporter, ATPase component BtuD

CRON 3.
cbiD	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	* Vibrio splendidus LGP32 Site: position = -223 score = 82.98 sequence = GGGAATCAGGTGTAA... Gene: VS_2661: Cobalt-precorrin-6 synthase, anaerobic	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-6 synthase, anaerobic
cbiC	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2662: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
cbiET	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2663: Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-)
cbiL	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2664: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
cbiG	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2665: Cobalamin biosynthesis protein CbiG	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalamin biosynthesis protein CbiG
cbiK	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2666: Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3)
cbiH	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2667: Cobalt-precorrin-3b C17-methyltransferase	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-3b C17-methyltransferase
cbiF	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2668: Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133)
cbiB	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2669: Adenosylcobinamide-phosphate synthase	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Adenosylcobinamide-phosphate synthase
cobD	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2670: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
cbiA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32 Gene: VS_2671: Cobyrinic acid A,C-diamide synthase	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Cobyrinic acid A,C-diamide synthase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Cobalamin - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --