Regulon of PhrR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type:	Transcription factor
TF locus tag:	VPA1472
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Light-dependent DNA repair
Effector:	Heat shock; Adenosylcobalamin
Regulog:	PhrR - Vibrionales
Statistics of regulated genes:
- Genes	12
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By trascription factor - PhrR
By TF family - MerR
By effector - Heat shock
By effector - Adenosylcobalamin
By pathway - Light-dependent DNA repair

Regulated operons
	Locus Tag	Name	Function
Position: -83 Score: 6.4 Sequence: TGTACAACTAATTTTCTTGTACA Position: -37 Score: 6.2 Sequence: TATACAACTAAACTTTTTGTATA Locus tag: VPA1473 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: VPA1472 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: VPA1471 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: VPA1470 Name: ykuD Funciton: L,D-transpeptidase catalytic domain
	VPA1473	COG3272	COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
	VPA1472	phrR	Transcriptional regulator, MerR family, associated with photolyase
	VPA1471	phr	Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
	VPA1470	ykuD	L,D-transpeptidase catalytic domain
Position: -96 Score: 6.4 Sequence: TATACAAGTTTTTTTTTTGTACA Position: -51 Score: 6.3 Sequence: TGTACATGTAATATTTTTGTACA Locus tag: VP1119 Name: PF07366 Funciton: Protein of unknown function DUF1486 Locus tag: VP1120 Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) Locus tag: VP1121 Name: PF01593 Funciton: Flavin containing amine oxidoreductase Locus tag: VP1122 Name: PF07103 Funciton: Protein of unknown function DUF1365 Locus tag: VP1123 Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase Locus tag: VP1124 Name: PF11086 Funciton: Protein of unknown function DUF2878 Locus tag: VP1125 Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein Locus tag: VP1126 Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor
	VP1119	PF07366	Protein of unknown function DUF1486
	VP1120	PF00106	Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
	VP1121	PF01593	Flavin containing amine oxidoreductase
	VP1122	PF07103	Protein of unknown function DUF1365
	VP1123	PF02353	S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
	VP1124	PF11086	Protein of unknown function DUF2878
	VP1125	FIG026291	FIG026291: Hypothetical periplasmic protein
	VP1126	FIG002577	FIG002577: Putative lipoprotein precursor

Export
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