Collection of regulogs for PhrR transcription factor
Genomes | 40 |
TF regulogs | 4 |
TF regulons | 23 |
TF binding sites | 84 |
Transcription factor PhrR from the MerR protein family binds vitamin B12 as a cofactor and regulates genes in response to blue light. PhrR regulators identified in Proteobacteria by comparative genomes are homologous to the light-inducible LitR repressors from Firmicutes and Thermus spp that are composed of an N-terminal DNA-binding domain from the MerR family and a C-terminal B12-binding domain. The identified novel group of LitR-related transcriptional regulators that control phr genes in gamma-proteobacteria was termed PhrR (for a Phr regulator). The comparative analysis of the reconstructed regulons revealed considerable variability in the regulon content between the analyzed lineages of gamma-proteobacteria.
Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
---|---|---|---|---|
Proteobacteria/Gamma | PhrR - Pseudomonadaceae | 8 (8) | 43 | ![]() |
Proteobacteria/Gamma | PhrR - Psychromonadaceae/Aeromonadales | 2 (6) | 4 | ![]() |
Proteobacteria/Gamma | PhrR - Shewanellaceae | 7 (16) | 21 | ![]() |
Proteobacteria/Gamma | PhrR - Vibrionales | 6 (10) | 16 | ![]() |