Profile of regulator PhrR in Pseudomonadaceae
Properties
| Regulator family: |
MerR |
| Regulation mode: |
repressor |
| Biological process: |
Light-dependent DNA repair |
| Effector: |
Blue light; Adenosylcobalamin |
| Regulog: |
PhrR - Pseudomonadaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Azotobacter vinelandii AvOP
|
|
Avin_10270 |
folM |
-78 |
4.4 |
TGTACAAAGCGGGACACTGCTATA |
|
Avin_41400 |
COG3272 |
-43 |
5 |
TATACAAATCATGAAAGCTGTACA |
|
Avin_41400 |
COG3272 |
-94 |
5.7 |
TGTACAAACTGTTGATCATGTACA |
|
Pseudomonas aeruginosa PAO1
|
|
PA4657 |
COG3380 |
-73 |
5.9 |
TGTACATTAAATCAAGCTTGTACA |
|
PA4658 |
COG3272 |
-106 |
5.9 |
TATACAAATACATTGACCTGTACA |
|
Pseudomonas entomophila L48
|
|
PSEEN0885 |
COG1090 |
-137 |
5.5 |
TGTACAATGCACAATGTTTGTATA |
|
PSEEN0884 |
COG3380 |
-74 |
5.9 |
TATACAAACATTGTGCATTGTACA |
|
PSEEN2737 |
PSEEN2737 |
-49 |
6.3 |
TGTACAAGAACCTAGTCTTGTACA |
|
PSEEN0883 |
COG3272 |
-43 |
5 |
TGTACAAACCAAGCCTTCTGTACA |
|
PSEEN0883 |
COG3272 |
-93 |
5.6 |
TATACAGAAAGTAACACTTGTATA |
|
PSEEN2706 |
PF07366 |
-94 |
6.1 |
TGTACAAGACTATTGACCTGTACA |
|
PSEEN2706 |
PF07366 |
-43 |
4.6 |
TGTACAAAATCACCTCGCTGTACA |
|
Pseudomonas fluorescens Pf-5
|
|
PFL_5142 |
COG1090 |
-147 |
5.6 |
TGTACAATATTGTTTTTTGGTATA |
|
PFL_5143 |
COG3380 |
-71 |
5.7 |
TATACCAAAAAACAATATTGTACA |
|
PFL_2258 |
folE |
-229 |
4.3 |
TGTACAGATAAAAAGTATTGAATC |
|
PFL_2258 |
folE |
-190 |
4.8 |
TGTACAAGTATTTGGGCTTATAAG |
|
PFL_2258 |
folE |
-145 |
4.4 |
TGTACAAAAAATTAAATTGTCGTA |
|
PFL_2328 |
mcp3 |
-134 |
6.1 |
TGTACATGAAACTTTTTTTGTACA |
|
PFL_5145 |
COG3272 |
-97 |
6.5 |
TATACAAATAATTTGACTTGTACA |
|
Pseudomonas mendocina ymp
|
|
Pmen_1073 |
COG3272 |
-42 |
5.2 |
TGTACATGCACCAACATATGTACA |
|
Pmen_1076 |
COG1090 |
-131 |
6.1 |
TATACAAGAATGTTTTCATGTACA |
|
Pmen_1075 |
COG3380 |
-75 |
5.9 |
TGTACATGAAAACATTCTTGTATA |
|
Pmen_3288 |
folM |
-251 |
5.6 |
TGTACAAAACACATGGATCGTACA |
|
Pmen_3288 |
folM |
-118 |
4.6 |
TGTACAACCCGCAGCTCTGGTATA |
|
Pmen_1353 |
mcp1 |
-94 |
5.6 |
TATACAAACAGGAATTCATGTACA |
|
Pmen_1073 |
COG3272 |
-92 |
6.4 |
TGTACAAATCATTTGACTTGTACA |
|
Pseudomonas putida KT2440
|
|
PP0743 |
COG1090 |
-136 |
5.3 |
TGTACAATGCCAAAATTATGTATA |
|
PP0742 |
COG3380 |
-74 |
5.8 |
TATACATAATTTTGGCATTGTACA |
|
PP2511 |
null |
-35 |
4.7 |
TATACAAAAACTTGTACAAGCATG |
|
PP2511 |
null |
-23 |
5.1 |
TGTACAAGCATGAGAGGTTGTACA |
|
PP0741 |
COG3272 |
-95 |
5.6 |
TATACAAAAATACTAGTTTGCATA |
|
PP2738 |
PF07366 |
-94 |
6.1 |
TATACAAGACCGTTGACTTGTATA |
|
PP2738 |
PF07366 |
-43 |
5.7 |
TGTACAACAATTCAATTTTGTACA |
|
PP0741 |
COG3272 |
-45 |
5 |
TGTACAAGTTTCGAGTCACGTACA |
|
Pseudomonas stutzeri A1501
|
|
PST_1967 |
COG1090 |
-85 |
5.2 |
TGTACATTCGAATAACCATGTATA |
|
PST_0951 |
PF04134 |
-57 |
5.2 |
TGTACAGGATTATTGTTTTGTTCA |
|
PST_1966 |
COG3272 |
-217 |
5.3 |
TATACATGGTTATTCGAATGTACA |
|
Pseudomonas syringae pv. tomato str. DC3000
|
|
PSPTO1127 |
COG1090 |
-240 |
5.5 |
TGTACAATCTTCTTGTTTGGTATA |
|
PSPTO1126 |
COG3380 |
-71 |
5.4 |
TATACCAAACAAGAAGATTGTACA |
|
PSPTO3689 |
phrB |
-47 |
6 |
TGTACAAAAATTTACATTGGTACA |
|
PSPTO1183 |
folM |
-101 |
6.1 |
TGTACAAAAAAATTCTCTGGTATA |
|
PSPTO1123 |
COG3272 |
-101 |
6.1 |
TCTACAAAGAATTTGACTTGTACA |
|
PSPTO1123 |
COG3272 |
-51 |
4.9 |
TGTACAGCACAGTTAATCTGTACA |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
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