Regulog PhrR - Shewanellaceae

Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PhrR
- By TF family - MerR
- By effector - Blue light
- By effector - Adenosylcobalamin
- By pathway - Light-dependent DNA repair
Genome | Genes | Operons |
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Shewanella oneidensis MR-1 | 12 | 2 |
Shewanella putrefaciens CN-32 | 12 | 2 |
Shewanella sp W3-18-1 | 12 | 2 |
Shewanella sp ANA-3 | 12 | 2 |
Shewanella sp MR-4 | 12 | 2 |
Shewanella sp MR-7 | 12 | 2 |
Shewanella baltica OS155 | 12 | 2 |
Shewanella denitrificans OS217 | ||
Shewanella frigidimarina NCIMB 400 | ||
Shewanella amazonensis SB2B | ||
Shewanella loihica PV-4 | ||
Shewanella pealeana ATCC 700345 | ||
Shewanella halifaxensis HAW-EB4 | ||
Shewanella piezotolerans WP3 | ||
Shewanella sediminis HAW-EB3 | ||
Shewanella woodyi ATCC 51908 |
Genes | Function | ||||||||||||||||
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CRON 1. | |||||||||||||||||
SO3420 |
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Shewanella oneidensis MR-1 Site: position = -70 score = 6.45302 sequence = AGTACATTAAGTTAATTTGTGTACA Gene: SO3420: cytochrome c, class II |
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Shewanella putrefaciens CN-32 Site: position = -70 score = 6.42006 sequence = AGTACATCAAGTTAATTTGTGTACA Gene: Sputcn32_2738: cytochrome c, class II |
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Shewanella sp W3-18-1 Site: position = -70 score = 6.42006 sequence = AGTACATCAAGTTAATTTGTGTACA Gene: Sputw3181_1274: cytochrome c, class II |
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Shewanella sp ANA-3 Site: position = -70 score = 6.38882 sequence = AGTACATTGAGTTAATTTGTGTACA Gene: Shewana3_1135: cytochrome c, class II |
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Shewanella sp MR-4 Site: position = -70 score = 6.38882 sequence = AGTACATTGAGTTAATTTGTGTACA Gene: Shewmr4_1134: cytochrome c, class II |
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Shewanella sp MR-7 Site: position = -70 score = 6.38882 sequence = AGTACATTGAGTTAATTTGTGTACA Gene: Shewmr7_1205: cytochrome c, class II |
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Shewanella baltica OS155 Site: position = -70 score = 6.42006 sequence = AGTACATCAAGTTAATTTGTGTACA Gene: Sbal_1223: cytochrome c, class II |
Gene: Sden_2744: cytochrome c, class II |
Gene: Sfri_2910: cytochrome c, class II |
Gene: Sama_0901: cytochrome c, class II |
Gene: Shew_1075: cytochrome c, class II |
Gene: Spea_1062: cytochrome c, class II |
Gene: Shal_1110: cytochrome c, class II |
Gene: swp_3755: cytochrome c, class II |
Gene: Ssed_1171: cytochrome c, class II |
Gene: Swoo_1266: cytochrome c, class II |
cytochrome c, class II |
CRON 2. | |||||||||||||||||
COG3272 |
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Shewanella oneidensis MR-1 Site: position = -70 score = 6.64681 sequence = TGTACAAAAACTTGATCCTTGTACA Site: position = -18 score = 4.77092 sequence = GATACAAGGAATCTCATTATGTACA Gene: SO3386: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella putrefaciens CN-32 Site: position = -70 score = 6.76233 sequence = TGTACAAAAACTTGATCTTTGTACA Site: position = -18 score = 5.50263 sequence = TATACAAGGAGTCAGATTATGTATA Gene: Sputcn32_2716: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella sp W3-18-1 Site: position = -70 score = 6.76233 sequence = TGTACAAAAACTTGATCTTTGTACA Site: position = -18 score = 5.50263 sequence = TATACAAGGAGTCAGATTATGTATA Gene: Sputw3181_1296: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella sp ANA-3 Site: position = -70 score = 6.64681 sequence = TGTACAAAAACTTGATCCTTGTACA Site: position = -18 score = 5.45311 sequence = GATACAAGGAATAGCATTATGTACA Gene: Shewana3_1164: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella sp MR-4 Site: position = -70 score = 6.64681 sequence = TGTACAAAAACTTGATCCTTGTACA Site: position = -18 score = 5.45311 sequence = GATACAAGGAATAGCATTATGTACA Gene: Shewmr4_1163: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella sp MR-7 Site: position = -70 score = 6.64681 sequence = TGTACAAAAACTTGATCCTTGTACA Site: position = -18 score = 5.45311 sequence = GATACAAGGAATAGCATTATGTACA Gene: Shewmr7_1234: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Shewanella baltica OS155 Site: position = -70 score = 6.39613 sequence = TATACAAAAACTTGATCCTTGTACA Site: position = -18 score = 5.29273 sequence = GATACAAGGAGTCGACTTATGTACA Gene: Sbal_3056: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
Gene: Sden_2839: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
Gene: Sfri_3039: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
Gene: Sama_0810: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
Gene: Shew_1478: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
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Gene: Swoo_2778: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA |
phrR |
Gene: SO3385: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Sputcn32_2715: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Sputw3181_1297: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Shewana3_1165: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Shewmr4_1164: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Shewmr7_1235: Transcriptional regulator, MerR family, associated with photolyase |
Gene: Sbal_3055: Transcriptional regulator, MerR family, associated with photolyase |
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Transcriptional regulator, MerR family, associated with photolyase |
phr |
Gene: SO3384: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sputcn32_2714: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sputw3181_1298: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Shewana3_1166: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Shewmr4_1165: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Shewmr7_1236: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sbal_3054: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sden_2838: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sfri_3038: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Sama_0811: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Gene: Shew_1479: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
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Gene: Swoo_2777: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
Deoxyribodipyrimidine photolyase (EC 4.1.99.3) |
PF10184 |
Gene: SO3383: Protein of unknown function DUF2358 |
Gene: Sputcn32_2713: Protein of unknown function DUF2358 |
Gene: Sputw3181_1299: Protein of unknown function DUF2358 |
Gene: Shewana3_1167: Protein of unknown function DUF2358 |
Gene: Shewmr4_1166: Protein of unknown function DUF2358 |
Gene: Shewmr7_1237: Protein of unknown function DUF2358 |
Gene: Sbal_3053: Protein of unknown function DUF2358 |
Gene: Sden_3372: Protein of unknown function DUF2358 |
Gene: Sfri_3035: Protein of unknown function DUF2358 |
Gene: Sama_0812: Protein of unknown function DUF2358 |
Gene: Shew_1480: Protein of unknown function DUF2358 |
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Gene: Swoo_2776: Protein of unknown function DUF2358 |
Protein of unknown function DUF2358 |
PF00106 |
Gene: SO3382: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sputcn32_2712: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sputw3181_1300: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Shewana3_1168: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Shewmr4_1167: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Shewmr7_1238: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sbal_3052: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sden_3371: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sfri_3034: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Sama_0813: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Gene: Shew_1481: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
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Gene: Swoo_2775: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) |
PF01593 |
Gene: SO3381: Flavin containing amine oxidoreductase |
Gene: Sputcn32_2711: Flavin containing amine oxidoreductase |
Gene: Sputw3181_1301: Flavin containing amine oxidoreductase |
Gene: Shewana3_1169: Flavin containing amine oxidoreductase |
Gene: Shewmr4_1168: Flavin containing amine oxidoreductase |
Gene: Shewmr7_1239: Flavin containing amine oxidoreductase |
Gene: Sbal_3051: Flavin containing amine oxidoreductase |
Gene: Sden_3370: Flavin containing amine oxidoreductase |
Gene: Sfri_3033: Flavin containing amine oxidoreductase |
Gene: Sama_0814: Flavin containing amine oxidoreductase |
Gene: Shew_1482: Flavin containing amine oxidoreductase |
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Gene: Swoo_2774: Flavin containing amine oxidoreductase |
Flavin containing amine oxidoreductase |
PF07103 |
Gene: SO3380: Protein of unknown function DUF1365 |
Gene: Sputcn32_2710: Protein of unknown function DUF1365 |
Gene: Sputw3181_1302: Protein of unknown function DUF1365 |
Gene: Shewana3_1170: Protein of unknown function DUF1365 |
Gene: Shewmr4_1169: Protein of unknown function DUF1365 |
Gene: Shewmr7_1240: Protein of unknown function DUF1365 |
Gene: Sbal_3050: Protein of unknown function DUF1365 |
Gene: Sden_3369: Protein of unknown function DUF1365 |
Gene: Sfri_3032: Protein of unknown function DUF1365 |
Gene: Sama_0815: Protein of unknown function DUF1365 |
Gene: Shew_1483: Protein of unknown function DUF1365 |
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Gene: Swoo_2773: Protein of unknown function DUF1365 |
Protein of unknown function DUF1365 |
PF02353 |
Gene: SO3379: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sputcn32_2709: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sputw3181_1303: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Shewana3_1171: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Shewmr4_1170: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Shewmr7_1241: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sbal_3049: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sden_3368: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sfri_3031: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Sama_0816: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
Gene: Shew_1484: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
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Gene: Swoo_2772: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase |
PF11086 |
Gene: SO3378: Protein of unknown function DUF2878 |
Gene: Sputcn32_2708: Protein of unknown function DUF2878 |
Gene: Sputw3181_1304: Protein of unknown function DUF2878 |
Gene: Shewana3_1172: Protein of unknown function DUF2878 |
Gene: Shewmr4_1171: Protein of unknown function DUF2878 |
Gene: Shewmr7_1242: Protein of unknown function DUF2878 |
Gene: Sbal_3048: Protein of unknown function DUF2878 |
Gene: Sden_3367: Protein of unknown function DUF2878 |
Gene: Sfri_3030: Protein of unknown function DUF2878 |
Gene: Sama_0817: Protein of unknown function DUF2878 |
Gene: Shew_1485: Protein of unknown function DUF2878 |
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Gene: Swoo_2771: Protein of unknown function DUF2878 |
Protein of unknown function DUF2878 |
FIG026291 |
Gene: SO3377: FIG026291: Hypothetical periplasmic protein |
Gene: Sputcn32_2707: FIG026291: Hypothetical periplasmic protein |
Gene: Sputw3181_1305: FIG026291: Hypothetical periplasmic protein |
Gene: Shewana3_1173: FIG026291: Hypothetical periplasmic protein |
Gene: Shewmr4_1172: FIG026291: Hypothetical periplasmic protein |
Gene: Shewmr7_1243: FIG026291: Hypothetical periplasmic protein |
Gene: Sbal_3047: FIG026291: Hypothetical periplasmic protein |
Gene: Sden_3366: FIG026291: Hypothetical periplasmic protein |
Gene: Sfri_3029: FIG026291: Hypothetical periplasmic protein |
Gene: Sama_0818: FIG026291: Hypothetical periplasmic protein |
Gene: Shew_1486: FIG026291: Hypothetical periplasmic protein |
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Gene: Swoo_2770: FIG026291: Hypothetical periplasmic protein |
FIG026291: Hypothetical periplasmic protein |
FIG002577 |
Gene: SO3376: FIG002577: Putative lipoprotein precursor |
Gene: Sputcn32_2706: FIG002577: Putative lipoprotein precursor |
Gene: Sputw3181_1306: FIG002577: Putative lipoprotein precursor |
Gene: Shewana3_1174: FIG002577: Putative lipoprotein precursor |
Gene: Shewmr4_1173: FIG002577: Putative lipoprotein precursor |
Gene: Shewmr7_1244: FIG002577: Putative lipoprotein precursor |
Gene: Sbal_3046: FIG002577: Putative lipoprotein precursor |
Gene: Sden_3365: FIG002577: Putative lipoprotein precursor |
Gene: Sfri_3028: FIG002577: Putative lipoprotein precursor |
Gene: Sama_0819: FIG002577: Putative lipoprotein precursor |
Gene: Shew_1487: FIG002577: Putative lipoprotein precursor |
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Gene: Swoo_2769: FIG002577: Putative lipoprotein precursor |
FIG002577: Putative lipoprotein precursor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |