Regulon of PhrR in Shewanella baltica OS155
| Regulator type: | Transcription factor |
| TF locus tag: | Sbal_3055 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Light-dependent DNA repair |
| Effector: | Blue light; Adenosylcobalamin |
| Regulog: | PhrR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - PhrR
- By TF family - MerR
- By effector - Blue light
- By effector - Adenosylcobalamin
- By pathway - Light-dependent DNA repair
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -70
Score: 6.4 Sequence: TATACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.3 Sequence: GATACAAGGAGTCGACTTATGTACA
Locus tag: Sbal_3056
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sbal_3055
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sbal_3054
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sbal_3053
Name: PF10184 Funciton: Protein of unknown function DUF2358
Locus tag: Sbal_3052
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sbal_3051
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: Sbal_3050
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: Sbal_3049
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sbal_3048
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: Sbal_3047
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sbal_3046
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
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COG3272
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COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
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phrR
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Transcriptional regulator, MerR family, associated with photolyase
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phr
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Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
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PF10184
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Protein of unknown function DUF2358
|
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PF00106
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Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
|
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PF01593
|
Flavin containing amine oxidoreductase
|
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PF07103
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Protein of unknown function DUF1365
|
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PF02353
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S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
|
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PF11086
|
Protein of unknown function DUF2878
|
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FIG026291
|
FIG026291: Hypothetical periplasmic protein
|
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FIG002577
|
FIG002577: Putative lipoprotein precursor
|
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Position: -70
Score: 6.4 Sequence: AGTACATCAAGTTAATTTGTGTACA
Locus tag: Sbal_1223
Name: SO3420 Funciton: cytochrome c, class II |
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SO3420
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cytochrome c, class II
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |