Regulon of PhrR in Shewanella oneidensis MR-1

Properties
Regulator type:	Transcription factor
TF locus tag:	SO3385
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Light-dependent DNA repair
Effector:	Blue light; Adenosylcobalamin
Regulog:	PhrR - Shewanellaceae
Statistics of regulated genes:
- Genes	12
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PhrR
By TF family - MerR
By effector - Blue light
By effector - Adenosylcobalamin
By pathway - Light-dependent DNA repair

Regulated operons
	Locus Tag	Name	Function
Position: -70 Score: 6.5 Sequence: AGTACATTAAGTTAATTTGTGTACA Locus tag: SO3420 Name: SO3420 Funciton: cytochrome c, class II
	SO3420	SO3420	cytochrome c, class II
Position: -70 Score: 6.6 Sequence: TGTACAAAAACTTGATCCTTGTACA Position: -18 Score: 4.8 Sequence: GATACAAGGAATCTCATTATGTACA Locus tag: SO3386 Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA Locus tag: SO3385 Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase Locus tag: SO3384 Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3) Locus tag: SO3383 Name: PF10184 Funciton: Protein of unknown function DUF2358 Locus tag: SO3382 Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) Locus tag: SO3381 Name: PF01593 Funciton: Flavin containing amine oxidoreductase Locus tag: SO3380 Name: PF07103 Funciton: Protein of unknown function DUF1365 Locus tag: SO3379 Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase Locus tag: SO3378 Name: PF11086 Funciton: Protein of unknown function DUF2878 Locus tag: SO3377 Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein Locus tag: SO3376 Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor
	SO3386	COG3272	COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
	SO3385	phrR	Transcriptional regulator, MerR family, associated with photolyase
	SO3384	phr	Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
	SO3383	PF10184	Protein of unknown function DUF2358
	SO3382	PF00106	Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
	SO3381	PF01593	Flavin containing amine oxidoreductase
	SO3380	PF07103	Protein of unknown function DUF1365
	SO3379	PF02353	S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
	SO3378	PF11086	Protein of unknown function DUF2878
	SO3377	FIG026291	FIG026291: Hypothetical periplasmic protein
	SO3376	FIG002577	FIG002577: Putative lipoprotein precursor

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