Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing phr gene

Properties
Regulog: PhrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Blue light; Adenosylcobalamin
Phylum: Proteobacteria/Gamma
Built upon 21 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella baltica OS155
Position: -70
Score: 6.39613
Sequence: TATACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.29273
Sequence: GATACAAGGAGTCGACTTATGTACA
Locus tag: Sbal_3056
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sbal_3055
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sbal_3054
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sbal_3053
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Sbal_3052
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sbal_3051
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Sbal_3050
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Sbal_3049
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sbal_3048
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Sbal_3047
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sbal_3046
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.4 TATACAAAAACTTGATCCTTGTACA Sbal_3056
-18 5.3 GATACAAGGAGTCGACTTATGTACA
Shewanella oneidensis MR-1
Position: -70
Score: 6.64681
Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 4.77092
Sequence: GATACAAGGAATCTCATTATGTACA
Locus tag: SO3386
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: SO3385
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: SO3384
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: SO3383
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: SO3382
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: SO3381
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: SO3380
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: SO3379
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: SO3378
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: SO3377
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: SO3376
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.6 TGTACAAAAACTTGATCCTTGTACA SO3386
-18 4.8 GATACAAGGAATCTCATTATGTACA
Shewanella putrefaciens CN-32
Position: -70
Score: 6.76233
Sequence: TGTACAAAAACTTGATCTTTGTACA
Position: -18
Score: 5.50263
Sequence: TATACAAGGAGTCAGATTATGTATA
Locus tag: Sputcn32_2716
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sputcn32_2715
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sputcn32_2714
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sputcn32_2713
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Sputcn32_2712
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sputcn32_2711
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Sputcn32_2710
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Sputcn32_2709
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sputcn32_2708
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Sputcn32_2707
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sputcn32_2706
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.8 TGTACAAAAACTTGATCTTTGTACA Sputcn32_2716
-18 5.5 TATACAAGGAGTCAGATTATGTATA
Shewanella sp ANA-3
Position: -70
Score: 6.64681
Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311
Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewana3_1164
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewana3_1165
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewana3_1166
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewana3_1167
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Shewana3_1168
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewana3_1169
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewana3_1170
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Shewana3_1171
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewana3_1172
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Shewana3_1173
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewana3_1174
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.6 TGTACAAAAACTTGATCCTTGTACA Shewana3_1164
-18 5.5 GATACAAGGAATAGCATTATGTACA
Shewanella sp MR-4
Position: -70
Score: 6.64681
Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311
Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewmr4_1163
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewmr4_1164
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewmr4_1165
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewmr4_1166
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Shewmr4_1167
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewmr4_1168
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewmr4_1169
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Shewmr4_1170
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewmr4_1171
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Shewmr4_1172
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewmr4_1173
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.6 TGTACAAAAACTTGATCCTTGTACA Shewmr4_1163
-18 5.5 GATACAAGGAATAGCATTATGTACA
Shewanella sp MR-7
Position: -70
Score: 6.64681
Sequence: TGTACAAAAACTTGATCCTTGTACA
Position: -18
Score: 5.45311
Sequence: GATACAAGGAATAGCATTATGTACA
Locus tag: Shewmr7_1234
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Shewmr7_1235
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Shewmr7_1236
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Shewmr7_1237
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Shewmr7_1238
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Shewmr7_1239
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Shewmr7_1240
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Shewmr7_1241
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Shewmr7_1242
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Shewmr7_1243
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Shewmr7_1244
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.6 TGTACAAAAACTTGATCCTTGTACA Shewmr7_1234
-18 5.5 GATACAAGGAATAGCATTATGTACA
Shewanella sp W3-18-1
Position: -70
Score: 6.76233
Sequence: TGTACAAAAACTTGATCTTTGTACA
Position: -18
Score: 5.50263
Sequence: TATACAAGGAGTCAGATTATGTATA
Locus tag: Sputw3181_1296
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: Sputw3181_1297
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: Sputw3181_1298
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: Sputw3181_1299
Name: PF10184
Funciton: Protein of unknown function DUF2358
Locus tag: Sputw3181_1300
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: Sputw3181_1301
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: Sputw3181_1302
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: Sputw3181_1303
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: Sputw3181_1304
Name: PF11086
Funciton: Protein of unknown function DUF2878
Locus tag: Sputw3181_1305
Name: FIG026291
Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: Sputw3181_1306
Name: FIG002577
Funciton: FIG002577: Putative lipoprotein precursor
COG3272-phrR-phr-PF10184-PF00106-PF01593-PF07103-PF02353-PF11086-FIG026291-FIG002577 -70 6.8 TGTACAAAAACTTGATCTTTGTACA Sputw3181_1296
-18 5.5 TATACAAGGAGTCAGATTATGTATA
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