Regulog PhrR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Light-dependent DNA repair
Effector:	Adenosylcobalamin; Blue light
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By trascription factor - PhrR
By TF family - MerR
By effector - Adenosylcobalamin
By effector - Blue light
By pathway - Light-dependent DNA repair

Statistics of regulated genes
Genome	Genes	Operons
Aeromonas hydrophila subsp. hydrophila ATCC 7966	8	1
Aeromonas salmonicida subsp. salmonicida A449	12	1
Tolumonas auensis DSM 9187
Psychromonas ingrahamii 37
Psychromonas sp. CNPT3
Moritella sp. PE36

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
COG3272	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -65 score = 6.48324 sequence = TATACAACTTACAATTTTTTGTATA Site: position = -18 score = 6.06335 sequence = TATACAAGGAGTGATGATATGTACA Gene: AHA_1099: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -18 score = 6.01495 sequence = TATACAAGGAGTGCCAACATGTACA Site: position = -75 score = 5.85077 sequence = TATACAGCTTCCATTATTTTGTATA Gene: ASA_3232: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA	Tolumonas auensis DSM 9187 Gene: Tola_1113: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA	Psychromonas ingrahamii 37 Gene: Ping_0997: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA	Psychromonas sp. CNPT3	Moritella sp. PE36	COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
phrR	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1100: Transcriptional regulator, MerR family, associated with photolyase	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3231: Transcriptional regulator, MerR family, associated with photolyase	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	Transcriptional regulator, MerR family, associated with photolyase
phr	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1101: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3230: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Tolumonas auensis DSM 9187 Gene: Tola_1114: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Psychromonas ingrahamii 37 Gene: Ping_0998: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)	Psychromonas sp. CNPT3	Moritella sp. PE36	Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
PF10184	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1102: Protein of unknown function DUF2358	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3229: Protein of unknown function DUF2358	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_0999: Protein of unknown function DUF2358	Psychromonas sp. CNPT3	Moritella sp. PE36	Protein of unknown function DUF2358
PF00106	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1103: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3228: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1000: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)	Psychromonas sp. CNPT3	Moritella sp. PE36	Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PF01593	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1104: Flavin containing amine oxidoreductase	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3227: Flavin containing amine oxidoreductase	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1001: Flavin containing amine oxidoreductase	Psychromonas sp. CNPT3	Moritella sp. PE36	Flavin containing amine oxidoreductase
PF07103	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1105: Protein of unknown function DUF1365	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3226: Protein of unknown function DUF1365	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1002: Protein of unknown function DUF1365	Psychromonas sp. CNPT3	Moritella sp. PE36	Protein of unknown function DUF1365
PF02353	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1106: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3225: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1003: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase	Psychromonas sp. CNPT3	Moritella sp. PE36	S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
PF11086	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3224: Protein of unknown function DUF2878	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1004: Protein of unknown function DUF2878	Psychromonas sp. CNPT3	Moritella sp. PE36	Protein of unknown function DUF2878
PF09493	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1107: Tryptophan-rich protein (DUF2389)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3223: Tryptophan-rich protein (DUF2389)	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1886: Tryptophan-rich protein (DUF2389)	Psychromonas sp. CNPT3	Moritella sp. PE36	Tryptophan-rich protein (DUF2389)
FIG026291	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1108: FIG026291: Hypothetical periplasmic protein	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3222: FIG026291: Hypothetical periplasmic protein	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1005: FIG026291: Hypothetical periplasmic protein	Psychromonas sp. CNPT3	Moritella sp. PE36	FIG026291: Hypothetical periplasmic protein
FIG002577	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_1109: FIG002577: Putative lipoprotein precursor	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_3221: FIG002577: Putative lipoprotein precursor	Tolumonas auensis DSM 9187	Psychromonas ingrahamii 37 Gene: Ping_1006: FIG002577: Putative lipoprotein precursor	Psychromonas sp. CNPT3	Moritella sp. PE36	FIG002577: Putative lipoprotein precursor

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhrR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --