Regulon of GntR in Vibrio cholerae O1 biovar eltor str. N16961
| Regulator type: | Transcription factor |
| TF locus tag: | VC0289 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Gluconate utilization |
| Effector: | Gluconate |
| Regulog: | GntR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - GntR
- By TF family - LacI
- By effector - Gluconate
- By pathway - Gluconate utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -40
Score: 5.7 Sequence: TAATGTTACTCATAACATTT
Locus tag: VC0289
Name: gntR Funciton: Gluconate utilization transcriptional regulator GntR, LacI family |
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gntR
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Gluconate utilization transcriptional regulator GntR, LacI family
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Position: -80
Score: 6.2 Sequence: TCATGTTATGGGTAACATGT
Position: -66
Score: 6.2 Sequence: ACATGTTACCGGTAACTTCA
Locus tag: VC0286
Name: gntU Funciton: Low-affinity gluconate transporter
Locus tag: VC0285
Name: eda Funciton: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
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gntU
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Low-affinity gluconate transporter
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eda
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2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)
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Position: -107
Score: 6.2 Sequence: TGAAGTTACCGGTAACATGT
Position: -93
Score: 6.2 Sequence: ACATGTTACCCATAACATGA
Locus tag: VC0287
Name: gntK Funciton: Thermoresistant gluconokinase (EC 2.7.1.12)
Locus tag: VC0288
Name: edd Funciton: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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gntK
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Thermoresistant gluconokinase (EC 2.7.1.12)
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edd
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6-phosphogluconate dehydratase (EC 4.2.1.12)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |