Regulog GntR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Gluconate utilization |
| Effector: | Gluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - GntR
- By TF family - LacI
- By effector - Gluconate
- By pathway - Gluconate utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 5 | 3 |
| Vibrio vulnificus CMCP6 | 5 | 3 |
| Vibrio harveyi ATCC BAA-1116 | 5 | 3 |
| Vibrio parahaemolyticus RIMD 2210633 | 4 | 2 |
| Vibrio shilonii AK1 | 2 | 1 |
| Vibrio splendidus LGP32 | 6 | 2 |
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | 5 | 3 |
| Vibrio angustum S14 | 3 | 2 |
| Photobacterium profundum SS9 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| gntR |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -40 score = 5.70632 sequence = TAATGTTACTCATAACATTT Gene: VC0289: Gluconate utilization transcriptional regulator GntR, LacI family |
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Vibrio vulnificus CMCP6 Site: position = -37 score = 5.74379 sequence = TAATGTTACAAGTAACATTA Gene: VV1_1098: Gluconate utilization transcriptional regulator GntR, LacI family |
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Vibrio harveyi ATCC BAA-1116 Site: position = -38 score = 5.90614 sequence = TAATGTTACTAGTAACATTA Gene: VIBHAR_00507: Gluconate utilization transcriptional regulator GntR, LacI family |
Gene: VP0058: Gluconate utilization transcriptional regulator GntR, LacI family |
Gene: VSAK1_19449: Gluconate utilization transcriptional regulator GntR, LacI family |
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Vibrio splendidus LGP32 Site: position = -43 score = 5.9175 sequence = CTATGTTACCAGTAACATTA Gene: VS_II0411: Gluconate utilization transcriptional regulator GntR, LacI family |
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Vibrio salmonicida LFI1238 Site: position = -32 score = 5.34993 sequence = ACTTGTTACAAGTAACATTG Gene: VSAL_II0668: Gluconate utilization transcriptional regulator GntR, LacI family |
Gene: VAS14_06913: Gluconate utilization transcriptional regulator GntR, LacI family |
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Gluconate utilization transcriptional regulator GntR, LacI family |
| CRON 2. | |||||||||||
| gntX |
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Vibrio splendidus LGP32 Site: position = -85 score = 5.53879 sequence = TAAAGTTACCGGTAACATCC Site: position = -61 score = 5.75856 sequence = CAACGTTACCGGTAACATAT Gene: VS_II0405: Predicted gluconate TRAP family transporter, DctP subunit |
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Predicted gluconate TRAP family transporter, DctP subunit |
| gntY |
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Gene: VS_II0406: Predicted gluconate TRAP family transporter, DctQ subunit |
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Predicted gluconate TRAP family transporter, DctQ subunit |
| gntZ |
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Gene: VS_II0407: Predicted gluconate TRAP family transporter, DctM subunit |
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Predicted gluconate TRAP family transporter, DctM subunit |
| gntK2 |
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Gene: VS_II0408: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Thermoresistant gluconokinase (EC 2.7.1.12) |
| gnd |
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Gene: VS_II0409: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
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6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) |
| CRON 3. | |||||||||||
| gntU |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -80 score = 6.24715 sequence = TCATGTTATGGGTAACATGT Site: position = -66 score = 6.1948 sequence = ACATGTTACCGGTAACTTCA Gene: VC0286: Low-affinity gluconate transporter |
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Vibrio vulnificus CMCP6 Site: position = -79 score = 6.45241 sequence = TCATGTTATCGGTAACATGT Site: position = -65 score = 6.09493 sequence = ACATGTTACCGGTAACGTAA Gene: VV1_1101: Low-affinity gluconate transporter |
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Vibrio harveyi ATCC BAA-1116 Site: position = -80 score = 6.45241 sequence = TCATGTTATCGGTAACATGT Site: position = -66 score = 5.93813 sequence = ACATGTTACCGGTAACTAAA Gene: VIBHAR_00514: Low-affinity gluconate transporter |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -80 score = 6.45241 sequence = TCATGTTATCGGTAACATGT Site: position = -66 score = 5.86357 sequence = ACATGTTACCGGTAACTGAA Gene: VP0064: Low-affinity gluconate transporter |
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Vibrio salmonicida LFI1238 Site: position = -87 score = 6.10762 sequence = TTAAGTTACGGGTAACATGT Site: position = -73 score = 5.73052 sequence = ACATGTTACCCGTAACTCTT Gene: VSAL_II0665: Low-affinity gluconate transporter |
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Vibrio angustum S14 Site: position = -107 score = 6.32528 sequence = CCATGTTACGGGTAACATGT Site: position = -93 score = 6.17923 sequence = ACATGTTACCCGTAACATTG Gene: VAS14_06893: Low-affinity gluconate transporter |
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Low-affinity gluconate transporter |
| eda |
Gene: VC0285: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: VV1_1102: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: VIBHAR_00515: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: VP0065: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
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Gene: VSAL_II0664: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
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2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
| CRON 4. | |||||||||||
| gntK |
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Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -93 score = 6.24715 sequence = ACATGTTACCCATAACATGA Site: position = -107 score = 6.1948 sequence = TGAAGTTACCGGTAACATGT Gene: VC0287: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio vulnificus CMCP6 Site: position = -107 score = 6.09493 sequence = TTACGTTACCGGTAACATGT Site: position = -93 score = 6.45241 sequence = ACATGTTACCGATAACATGA Gene: VV1_1100: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio harveyi ATCC BAA-1116 Site: position = -106 score = 5.93813 sequence = TTTAGTTACCGGTAACATGT Site: position = -92 score = 6.45241 sequence = ACATGTTACCGATAACATGA Gene: VIBHAR_00513: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -107 score = 5.86357 sequence = TTCAGTTACCGGTAACATGT Site: position = -93 score = 6.45241 sequence = ACATGTTACCGATAACATGA Gene: VP0063: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio shilonii AK1 Site: position = -129 score = 5.92089 sequence = AAAAGTTACCGGTATCATGT Site: position = -115 score = 5.94547 sequence = TCATGTTACCAGTAACATCG Gene: VSAK1_19439: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio salmonicida LFI1238 Site: position = -92 score = 6.10762 sequence = ACATGTTACCCGTAACTTAA Site: position = -106 score = 5.73052 sequence = AAGAGTTACGGGTAACATGT Gene: VSAL_II0666: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Vibrio angustum S14 Site: position = -75 score = 6.32528 sequence = ACATGTTACCCGTAACATGG Site: position = -89 score = 6.17923 sequence = CAATGTTACGGGTAACATGT Gene: VAS14_06898: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Thermoresistant gluconokinase (EC 2.7.1.12) |
| edd |
Gene: VC0288: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: VV1_1099: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: VIBHAR_00512: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: VP0062: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: VSAK1_19444: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Gene: VSAL_II0667: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: VAS14_06903: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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6-phosphogluconate dehydratase (EC 4.2.1.12) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |