Collection of regulogs for GntR transcription factor
| Genomes | 137 |
| TF regulogs | 13 |
| TF regulons | 57 |
| TF binding sites | 234 |
GntR is a repressor belonging to the LacI family. The GntR function was experimentally analyzed in Escherichia coli, where it control genes involved in gluconate and idonate utilization and the Entner-Doudoroff pathway genes [9537375]. GntR protein dimer binds to its palindromic operator in the absence of inducer, gluconate. In the precence of gluconate GntR protein dissociates form DNA. We used a comparative genomics approach to reconstruct transcriptional regulons controlled by GntR orthologs in Proteobacteria [24966856].
| Phylum | Regulog | TF regulons (studied genomes) | TFBSs | Logo |
|---|---|---|---|---|
| Proteobacteria/alpha | GntR - Rhizobiales | 1 (15) | 4 |  |
| Proteobacteria/alpha | GntR - Rhodospirillales | 1 (9) | 4 |  |
| Proteobacteria/beta | GntR - Burkholderia | 1 (8) | 4 |  |
| Proteobacteria/beta | GntR - Comamonadaceae | 8 (11) | 28 |  |
| Proteobacteria/beta | GntR - Various betaproteobacteria | 1 (12) | 1 |  |
| Proteobacteria/gamma | GntR - Alteromonadales | 1 (9) | 5 |  |
| Proteobacteria/gamma | GntR - Enterobacteriales | 12 (12) | 61 |  |
| Proteobacteria/gamma | GntR - Oceanospirillales/Alteromonadales | 3 (12) | 8 |  |
| Proteobacteria/gamma | GntR - Pasteurellales | 7 (9) | 28 |  |
| Proteobacteria/gamma | GntR - Pseudomonadaceae | 8 (8) | 32 |  |
| Proteobacteria/gamma | GntR - Psychromonadaceae/Aeromonadales | 5 (6) | 22 |  |
| Proteobacteria/gamma | GntR - Shewanellaceae | 1 (16) | 4 |  |
| Proteobacteria/gamma | GntR - Vibrionales | 8 (10) | 33 |  |