Regulog GntR - Psychromonadaceae/Aeromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Gluconate utilization
Effector:	Gluconate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 22 sites [see more]

Member of regulog collections

By taxonomy - Psychromonadaceae/Aeromonadales
By trascription factor - GntR
By TF family - LacI
By effector - Gluconate
By pathway - Gluconate utilization

Statistics of regulated genes
Genome	Genes	Operons
Psychromonas ingrahamii 37	9	3
Psychromonas sp. CNPT3
Moritella sp. PE36	3	3
Aeromonas hydrophila subsp. hydrophila ATCC 7966	5	3
Aeromonas salmonicida subsp. salmonicida A449	5	3
Tolumonas auensis DSM 9187	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes							Function

CRON 1.
gntX	* Psychromonas ingrahamii 37 Site: position = -98 score = 5.99049 sequence = GTAAGTTACCGGTAACATTC Site: position = -76 score = 5.19872 sequence = ATCAGTTACCGGTAACCTAT Gene: Ping_2933: Predicted gluconate TRAP family transporter, DctP subunit	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -67 score = 5.89616 sequence = AATAGTTACCGGTAACATAA Gene: PE36_03014: Predicted gluconate TRAP family transporter, DctP subunit	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Predicted gluconate TRAP family transporter, DctP subunit
gntY	Psychromonas ingrahamii 37 Gene: Ping_2934: Predicted gluconate TRAP family transporter, DctQ subunit	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_03009: Predicted gluconate TRAP family transporter, DctQ subunit	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Predicted gluconate TRAP family transporter, DctQ subunit
gntZ	Psychromonas ingrahamii 37 Gene: Ping_2935: Predicted gluconate TRAP family transporter, DctM subunit	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_03004: Predicted gluconate TRAP family transporter, DctM subunit	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Predicted gluconate TRAP family transporter, DctM subunit
gntK2	Psychromonas ingrahamii 37 Gene: Ping_2936: Thermoresistant gluconokinase (EC 2.7.1.12)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	Thermoresistant gluconokinase (EC 2.7.1.12)
gnd	Psychromonas ingrahamii 37 Gene: Ping_2937: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -109 score = 4.69736 sequence = TAACGATAGCGTTAACATTG Gene: PE36_03034: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)	Aeromonas hydrophila subsp. hydrophila ATCC 7966	Aeromonas salmonicida subsp. salmonicida A449	Tolumonas auensis DSM 9187	6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)

CRON 2.
gntR	* Psychromonas ingrahamii 37 Site: position = -21 score = 6.08613 sequence = TTATGTTACAGGTAACATTT Gene: Ping_2929: Gluconate utilization transcriptional regulator GntR, LacI family	Psychromonas sp. CNPT3	Moritella sp. PE36 Gene: PE36_03029: Gluconate utilization transcriptional regulator GntR, LacI family	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -35 score = 5.79623 sequence = TAATGTTACGTGTAACATTT Gene: AHA_0290: Gluconate utilization transcriptional regulator GntR, LacI family	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -35 score = 5.65215 sequence = TAATGTTACGTGTAACATTC Gene: ASA_4107: Gluconate utilization transcriptional regulator GntR, LacI family	Tolumonas auensis DSM 9187 Gene: Tola_0775: Gluconate utilization transcriptional regulator GntR, LacI family	Gluconate utilization transcriptional regulator GntR, LacI family

CRON 3.
gntT	Psychromonas ingrahamii 37	Psychromonas sp. CNPT3	Moritella sp. PE36	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -190 score = 6.36571 sequence = GCACGTTACCGGTAACATGT Site: position = -176 score = 6.15468 sequence = ACATGTTACCGGTAACAACA Gene: AHA_0286: High-affinity H+/gluconate symporter	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -190 score = 5.89335 sequence = GCACGTTACCGGCAACATGT Site: position = -176 score = 6.15468 sequence = ACATGTTACCGGTAACAACA Gene: ASA_4111: High-affinity H+/gluconate symporter	* Tolumonas auensis DSM 9187 Site: position = -176 score = 6.39577 sequence = TCATGTTACCGGTAACAAGT Site: position = -190 score = 6.16627 sequence = GCATGTTACCGGTATCATGT Gene: Tola_0779: High-affinity H+/gluconate symporter	High-affinity H+/gluconate symporter

CRON 4.
gntK	* Psychromonas ingrahamii 37 Site: position = -64 score = 5.60563 sequence = ATATGTTACCCGTAACTTAG Site: position = -78 score = 5.02426 sequence = TCAAGTTACGGCTAATATGT Gene: Ping_2932: Thermoresistant gluconokinase (EC 2.7.1.12)	Psychromonas sp. CNPT3	* Moritella sp. PE36 Site: position = -83 score = 5.15013 sequence = CTGTGTTAACGGTAACATTG Gene: PE36_03024: Thermoresistant gluconokinase (EC 2.7.1.12)	* Aeromonas hydrophila subsp. hydrophila ATCC 7966 Site: position = -89 score = 6.15468 sequence = TGTTGTTACCGGTAACATGT Site: position = -75 score = 6.36571 sequence = ACATGTTACCGGTAACGTGC Gene: AHA_0287: Thermoresistant gluconokinase (EC 2.7.1.12)	* Aeromonas salmonicida subsp. salmonicida A449 Site: position = -89 score = 6.15468 sequence = TGTTGTTACCGGTAACATGT Site: position = -75 score = 5.89335 sequence = ACATGTTGCCGGTAACGTGC Gene: ASA_4110: Thermoresistant gluconokinase (EC 2.7.1.12)	* Tolumonas auensis DSM 9187 Site: position = -76 score = 6.16627 sequence = ACATGATACCGGTAACATGC Site: position = -90 score = 6.39577 sequence = ACTTGTTACCGGTAACATGA Gene: Tola_0778: Thermoresistant gluconokinase (EC 2.7.1.12)	Thermoresistant gluconokinase (EC 2.7.1.12)
edd	Psychromonas ingrahamii 37 Gene: Ping_2931: Phosphogluconate dehydratase (EC 4.2.1.12)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0288: Phosphogluconate dehydratase (EC 4.2.1.12)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_4109: Phosphogluconate dehydratase (EC 4.2.1.12)	Tolumonas auensis DSM 9187 Gene: Tola_0777: Phosphogluconate dehydratase (EC 4.2.1.12)	Phosphogluconate dehydratase (EC 4.2.1.12)
eda	Psychromonas ingrahamii 37 Gene: Ping_2930: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)	Psychromonas sp. CNPT3	Moritella sp. PE36	Aeromonas hydrophila subsp. hydrophila ATCC 7966 Gene: AHA_0289: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)	Aeromonas salmonicida subsp. salmonicida A449 Gene: ASA_4108: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)	Tolumonas auensis DSM 9187 Gene: Tola_0776: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)	2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GntR - Psychromonadaceae/Aeromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --